BAC Information

Click to search

BAC

Clone NameB6Ng01-144G08
Chromosome1 (Build37)
Map Location 105,245,076 - 105,427,191
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream geneLOC383546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144G08.bB6Ng01-144G08.g
ACCDH942085DH942086
length1,1481,154
definitionDH942085|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G08, 5' end.DH942086|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,245,076 - 105,246,097)(105,426,014 - 105,427,191)
sequence
gaattcctagagatagagtaaaacaaagcccacctgttgacacctattgg
gggaaatattaaaaacatgaactggctcattcctgagcttgtgcctctgc
cccagtggcttgacgggccatgcagtggcaggcaatggccaacctctatt
tatctcgagaagactctcactcagaactccacaatctctccatctagctc
tctaagttctcactagcaggtcattaccatgccagtcctgtgcttcaaac
cttccatggcctttgtggtgcacatcaggcaaactcattctttgccacta
tacctttctctcttgaacccagaggaaccacctcctgaaggaaaacacaa
cacaaatttagttcagaatcaatggtaactcaatctctaggtgcaacaaa
taaaacctaatcttaaaagccttattaaagtcagattcctctggatttga
atccttgttgaccccttccccccatgagaccaggaacctctatcagcaac
atcttacccatatgctgtgctgtccccattccaaaatgacctaaccctat
cctgcttcctctcttcctctgaccatcctggaagtcccacctacttatcc
agtaattggctccttttttctttatgggattggatacaacataaagcaca
aagagaatacacatagaccaacacagaaagacattcccaggaaaacacaa
acaaattgaaaggctgtctgagattgccttccttcctgcacatggaaggt
tcatagacccacagccaattcagaattcagataagaactagtaagttcta
caacttttaggaggggctccagacattcttgccactggctgggtgacaaa
tatgcgtctgatttgtccctgtcgacccacagtttaaatcagaacagaat
taaacctaaaacaggaacacaatgtggacaaaacaaaagacaaccattca
tccatacttacagattcaatagcactgcacaatttgggtcagagggtctc
cagaaaattctgggatgagcctcaatgcaggttccacaattctctgaaga
atgaaaccctggactcaataagcatgaatgcacaaagagttttattctca
gatgtcagcatgctggggtctccattacacttagagagcaaccccgtg
gaattcacttgctgcagcatcctgtactggacatttctacatttttaaaa
atctagaaataactgttacttaaactttcatttccctacagactcaaata
agaatagagaaatatttcctcaagactcttccactctttgagcccaggcc
aagacatgttctctgctgacaaagggatgcctcttccaatatcttgagac
taaaatggatgacagagagaacagagagaaaactcagaatgcattcactg
gccccagaaaatatgaaccctggagaaattctttgagaacagtaaataat
tcccctatataagagataatgatcacaactttagtctatctttagtctaa
gcacttggaagacagtcaggcaaatctctgtgagtgtgagacaactctag
gttacatagttagttccaaaccaggaaactacagaaaaaacttctgactt
aaaaaaaaaaagttaatatcatgactgaagagaacaaagacagacaaact
gacaacatatactttcctaagaaggcacactcacaatgacctaacgattt
ctccctaagaatcaacttgtggaaatgtatagcaatttctcaagaattag
tcacctaaccacgctaggcacttggataatacagatcatcttaaaatacc
agaaatatgcctattaagttcataatcagcagaactagcctttcacaaat
attcaggtctcaagtattaagataaatttgcaaattgttccttggtattc
taagtttctgagctaatatccacttatcagtgagtgcatatcatgtgagt
tcttttgtgattgggttacatcccacaggatgataccctccagatccatc
catttgcctaggaatttcataaattcattgttttaatagctgagtggtac
tccattgtgtaaatataccacattttctgtatccattcctttgtgaggga
cagctgggttctttccagcttctggctattgtaaatagcttctatgaaca
taggagatatgttctattacagttgcaccatcttcttgcatatatgccag
agaggtattgtgatctccactatgtcaatttctgaagacaccgagactga
ttccaagggatggattgcctgccatcccatcacaagtggagagttcctct
ttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105245076_105246097
seq2: B6Ng01-144G08.b_189_1194

seq1  CCTCTATTTATCTCGAGAAGACTCTCACTCAGAACTCCACAATCTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTTATCTCGAGAAGACTCTCACTCAGAACTCCACAATCTCTCCA  50

seq1  TCTAGCTCTCTAAGTTCTCACTAGCAGGTCATTACCATGCCAGTCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCTCTAAGTTCTCACTAGCAGGTCATTACCATGCCAGTCCTGTG  100

seq1  CTTCAAACCTTCCATGGCCTTTGTGGTGCACATCAGGCAAACTCATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACCTTCCATGGCCTTTGTGGTGCACATCAGGCAAACTCATTCTT  150

seq1  TGCCACTATACCTTTCTCTCTTGAACCCAGAGGAACCACCTCCTGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTATACCTTTCTCTCTTGAACCCAGAGGAACCACCTCCTGAAGGA  200

seq1  AAACACAACACAAATTTAGTTCAGAATCAATGGTAACTCAATCTCTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAACACAAATTTAGTTCAGAATCAATGGTAACTCAATCTCTAGGT  250

seq1  GCAACAAATAAAACCTAATCTTAAAAGCCTTATTAAAGTCAGATTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAATAAAACCTAATCTTAAAAGCCTTATTAAAGTCAGATTCCTCT  300

seq1  GGATTTGAATCCTTGTTGACCCCTTCCCCCCATGAGACCAGGAACCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAATCCTTGTTGACCCCTTCCCCCCATGAGACCAGGAACCTCTA  350

seq1  TCAGCAACATCTTACCCATATGCTGTGCTGTCCCCATTCCAAAATGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAACATCTTACCCATATGCTGTGCTGTCCCCATTCCAAAATGACCT  400

seq1  AACCCTATCCTGCTTCCTCTCTTCCTCTGACCATCCTGGAAGTCCCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATCCTGCTTCCTCTCTTCCTCTGACCATCCTGGAAGTCCCACCT  450

seq1  ACTTATCCAGTAATTGGCTCCTTTTTTCTTTATGGGATTGGATACAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCCAGTAATTGGCTCCTTTTTTCTTTATGGGATTGGATACAACAT  500

seq1  AAAGCACAAAGAGAATACACATAGACCAACACAGAAAGACATTCCCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAAAGAGAATACACATAGACCAACACAGAAAGACATTCCCAGGA  550

seq1  AAACACAAACAAATTGAAAGGCTGTCTGAGATTGCCTTCCTTCCTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAACAAATTGAAAGGCTGTCTGAGATTGCCTTCCTTCCTGCACA  600

seq1  TGGAAGGTTCATAGACCCACAGCCAATTCAGAATTCAGATAAGAACTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTTCATAGACCCACAGCCAATTCAGAATTCAGATAAGAACTAGT  650

seq1  AAGTTCTACAACTTTTAGGAGGGGCTCCAGACATTCTTGCCACTGGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTACAACTTTTAGGAGGGGCTCCAGACATTCTTGCCACTGGCTGG  700

seq1  GTGACAAAATATGCGTCTGATTTGTCCCTGTCGACCCACAGTTTAAATCA  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAC-AAATATGCGTCTGATTTGTCCCTGTCGACCCACAGTTTAAATCA  749

seq1  GAAACAGAATTAAACCTAAAACAGGAACACAAATGTGGACAAAACAAAAG  800
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  G-AACAGAATTAAACCTAAAACAGGAACAC-AATGTGGACAAAACAAAAG  797

seq1  ACAACCATTCATCCATACTTACAGATTCAAATAGCACTGCACAATTTGGG  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAACCATTCATCCATACTTACAGATTC-AATAGCACTGCACAATTTGGG  846

seq1  TCAGAGGGTCTCCAGAAAAATCCTGGGATGAGCCCTCAAATGCAAGGGTC  900
      ||||||||||||||| ||||| |||||||||| |||| ||||| ||| ||
seq2  TCAGAGGGTCTCCAG-AAAATTCTGGGATGAG-CCTC-AATGC-AGGTTC  892

seq1  CACAATTCTCTGAAGAATGATACCCTGGACTCAAATAGCATGGAAATGCA  950
      |||||||||||||||||||| |||||||||||||  ||||||  ||||||
seq2  CACAATTCTCTGAAGAATGAAACCCTGGACTCAATAAGCATG--AATGCA  940

seq1  CAGAGAGTTTTATTCTCCAGATGTCCAGCATGCTGGGGTCTACCATTACC  1000
      || ||||||||||||| ||||||| |||||||||||||||| ||||||| 
seq2  CAAAGAGTTTTATTCT-CAGATGT-CAGCATGCTGGGGTCT-CCATTAC-  986

seq1  AACATAGAGAGACAACCACGTG  1022
       || ||||||| ||||| ||||
seq2  -ACTTAGAGAG-CAACCCCGTG  1006

seq1: chr1_105426014_105427191
seq2: B6Ng01-144G08.g_68_1221 (reverse)

seq1  AGAAAGAGGAACACTCCTACATTGTTGATGGGATTGCAAGCTTATACAAT  50
      |||||||||||| |||| || ||| ||||||||| ||| ||  |  | ||
seq2  AGAAAGAGGAACTCTCC-AC-TTG-TGATGGGATGGCAGGC--AATCCAT  45

seq1  CACTGTGGAAATCAGTCTCGTGGTTCCTCAGAAAATTGGACATAGGTGGA  100
      | || ||| ||||||||||| |  || |||||||  | |||||| |||||
seq2  CCCT-TGG-AATCAGTCTCG-GTGTCTTCAGAAA--TTGACATA-GTGGA  89

seq1  GGATCCAACAATACCTCTCCTGGGCATATATGC-AGAAGATGTGTGCAAC  149
       ||||  ||||||||||||   ||||||||||| |||||||| |||||||
seq2  -GATC--ACAATACCTCTC--TGGCATATATGCAAGAAGATG-GTGCAAC  133

seq1  TTGTAATTAGAACATATCCTCCCTATGTTCATAGAAGCCTTATTTACAAT  199
       ||||| |||||||||||   |||||||||||||||||  ||||||||||
seq2  -TGTAA-TAGAACATATC--TCCTATGTTCATAGAAGC--TATTTACAAT  177

seq1  AGCCAGAAGCTGGAAAGAACCCAGCTGTCCCTCAACAAAGGAATGGATAC  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCCAGAAGCTGGAAAGAACCCAGCTGTCCCTC-ACAAAGGAATGGATAC  226

seq1  AGAAAATGTGGTATATTTACACAATGGAGTACCACTCAGCTATTAAAAAC  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAAAATGTGGTATATTTACACAATGGAGTACCACTCAGCTATT-AAAAC  275

seq1  AATGAATTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGTATCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGTATCAT  325

seq1  CCTGTGGGATGTAACCCAATCACAAAAGAACTCACATGATATGCACTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGATGTAACCCAATCACAAAAGAACTCACATGATATGCACTCAC  375

seq1  TGATAAGTGGATATTAGCTCAGAAACTTAGAATACCAAGGAACAATTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTGGATATTAGCTCAGAAACTTAGAATACCAAGGAACAATTTGC  425

seq1  AAATTTATCTTAATACTTGAGACCTGAATATTTGTGAAAGGCTAGTTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATCTTAATACTTGAGACCTGAATATTTGTGAAAGGCTAGTTCTG  475

seq1  CTGATTATGAACTTAATAGGCATATTTCTGGTATTTTAAGATGATCTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATGAACTTAATAGGCATATTTCTGGTATTTTAAGATGATCTGTA  525

seq1  TTATCCAAGTGCCTAGCGTGGTTAGGTGACTAATTCTTGAGAAATTGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAAGTGCCTAGCGTGGTTAGGTGACTAATTCTTGAGAAATTGCTA  575

seq1  TACATTTCCACAAGTTGATTCTTAGGGAGAAATCGTTAGGTCATTGTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCACAAGTTGATTCTTAGGGAGAAATCGTTAGGTCATTGTGAG  625

seq1  TGTGCCTTCTTAGGAAAGTATATGTTGTCAGTTTGTCTGTCTTTGTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTCTTAGGAAAGTATATGTTGTCAGTTTGTCTGTCTTTGTTCTC  675

seq1  TTCAGTCATGATATTAACTTTTTTTTTTTAAGTCAGAAGTTTTTTCTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATGATATTAACTTTTTTTTTTTAAGTCAGAAGTTTTTTCTGTA  725

seq1  GTTTCCTGGTTTGGAACTAACTATGTAACCTAGAGTTGTCTCACACTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGGTTTGGAACTAACTATGTAACCTAGAGTTGTCTCACACTCAC  775

seq1  AGAGATTTGCCTGACTGTCTTCCAAGTGCTTAGACTAAAGATAGACTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTGCCTGACTGTCTTCCAAGTGCTTAGACTAAAGATAGACTAAA  825

seq1  GTTGTGATCATTATCTCTTATATAGGGGAATTATTTACTGTTCTCAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATCATTATCTCTTATATAGGGGAATTATTTACTGTTCTCAAAGA  875

seq1  ATTTCTCCAGGGTTCATATTTTCTGGGGCCAGTGAATGCATTCTGAGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAGGGTTCATATTTTCTGGGGCCAGTGAATGCATTCTGAGTTT  925

seq1  TCTCTCTGTTCTCTCTGTCATCCATTTTAGTCTCAAGATATTGGAAGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTTCTCTCTGTCATCCATTTTAGTCTCAAGATATTGGAAGAGG  975

seq1  CATCCCTTTGTCAGCAGAGAACATGTCTTGGCCTGGGCTCAAAGAGTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTTGTCAGCAGAGAACATGTCTTGGCCTGGGCTCAAAGAGTGGA  1025

seq1  AGAGTCTTGAGGAAATATTTCTCTATTCTTATTTGAGTCTGTAGGGAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTGAGGAAATATTTCTCTATTCTTATTTGAGTCTGTAGGGAAAT  1075

seq1  GAAAGTTTAAGTAACAGTTATTTCTAGATTTTTAAAAATGTAGAAATGTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTAAGTAACAGTTATTTCTAGATTTTTAAAAATGTAGAAATGTC  1125

seq1  CAGTACAGGATGCTGCAGCAAGTGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  CAGTACAGGATGCTGCAGCAAGTGAATTC  1154