BAC Information

Click to search

BAC

Clone NameB6Ng01-144G18
Chromosome1 (Build37)
Map Location 114,845,962 - 115,031,181
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144G18.bB6Ng01-144G18.g
ACCDH942103DH942104
length1,1041,099
definitionDH942103|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G18, 5' end.DH942104|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,030,059 - 115,031,181)(114,845,962 - 114,847,077)
sequence
gaattccatgtgatcatctgcctcacattcctgttgacattacatataca
aagtaattattatgtagaatgagcaattgcaaagtatctaaaatgagaag
aaaacagtagtattttaggaaaaggagaaatttgaaaatagtaggttatt
aacttagttttacatcataaaggggcttgaattaccttctaaatggaaaa
caataaggcacacttggggagtcacaaatgaaagggtcatgatctgactt
atgactaaatgactttaatgtggatattgcactgggaagatgagcctcag
attattaacaccagctaacaagtaactgcagcaggagaatgaaggatggc
agtggtaagcaaagagagctcagacttcacaattacatttgtggattaat
tgattctagtagaagattgaaggtcaataatatcatggggtacacttttt
gaaataaaaaagacagtaggaaggtagtaagttaggggttctgttttgag
agtattttggataagatatctacaagggaaaaaaagagattttgcacaat
aatctagaatctttgaagatataagaaccagacatgtaaaatttgaagtc
aatagttgcactagttaatatgactgccaatttgacaaagtgcataacca
cttgagagtcttccttgagaattgctcatgtcaggttagcatgtccatat
atttcaggggtatttgcttaattaataattgatgtagtatgtctcagcct
attatggtatatattatttacagacagctaagcatgaacctttgggcaat
ccagcaacatcacatttccatgttttcttcttcttcaagatcctgatttt
actttcctctgtaatagactgtgacctatagagtcgaagatgtatagagt
ctttttctccacgtcctagctgtttttttggaagagtgttgatcacagaa
gaaaagcctaatagaatatatatataagaggtatttaattggacatattc
acctaatgacatgtctatgaaaaggagagtcaaaaagagatccatgaccc
tttctcattaagtagttcagtcgacaatcaaataacttccaaaaataatg
ttat
gaattctttccatattttgccatgggctttataattttatcttttggaaa
aagactgcggtggcctattagaacccagagtcgagcctctgctctataat
tccaggattgtattgaaactaattttgatttccaatatttgtatatgatt
ttttaatattatatatttgaaaaacttcaagtctcataaaatctgaatcc
atctcagtattaaccataagctacattcttatttaaaagttcaacagtat
gtagaaatagaatttaaaagatctacatatgtagaagtaaaagttgtttg
acatttttgaaatgattactcatggtgtggtttatggaatcacctcacaa
aaatataatttaacattaagaggaggaaaggtcatacactgtaaaactaa
gttgacttcttttccttcgcctgtttttgacaaaggccttagttgtatta
aaagagatacttggaagagacacttgaggagaagaaaagtacataaatca
ccctgatttggcatagcttcctgttggtacattaaaagaaccaacaaaag
ccaatgtaagggagaaataacaaattttaacttatagttcaggaatgcag
tcaatcatgacagagaatcgtagcactaggagctgagagagcagttctca
tcacatccagtcagtatgcaggaaaacaaatgaatacatgatagtgtacc
cctggtttactgttttgtactgggcaggatcctttgcctagagaatgttc
ccacctacaactaatgcaggtcttccacatcaactaacttaatcaagatt
atcccccacaggcatgtctataaaattttagatactgtgaaattaataat
tcacaataactatcatacacacacatacacacacacacacacacacacac
acacacaccaaaactaccacaactaccactggatccttgatactaggttt
cctttccaacaaaagcataaggaatgtgttggtcaggatcaatcaatatt
actactgacctacctcaccccaccacacgcacactccaatatatatattt
attgcctacattgttcatgaaagtctggaaaagaaaagttatgtgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115030059_115031181
seq2: B6Ng01-144G18.b_45_1148 (reverse)

seq1  ATAACATATATTTTTGGAAGTTAATTTTGATTTGTCTGACTGAACTTACT  50
      ||||||| |||||||||||||||  ||||| ||||| |||||||| ||||
seq2  ATAACAT-TATTTTTGGAAGTTA--TTTGA-TTGTC-GACTGAAC-TACT  44

seq1  TTAAATGAGAAAGGGTCATTGGGATCTCTTTTTGACTCTCCTTTTTCATA  100
      |  ||||||||||||||||  |||||||||||||||||||| ||||||||
seq2  T--AATGAGAAAGGGTCAT--GGATCTCTTTTTGACTCTCC-TTTTCATA  89

seq1  GGAACATTGTCATTAGGTGAATATGTCCAATTAAATACCTCTGTATATAT  150
      |  ||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  G--ACA-TGTCATTAGGTGAATATGTCCAATTAAATACCTCT-TATATAT  135

seq1  AATATTCTATTAGGCTTTTCTTCTGTGATCAAACACTCTTCCAAAAAAAA  200
       ||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  -ATATTCTATTAGGCTTTTCTTCTGTGATC-AACACTCTTCC-AAAAAAA  182

seq1  CAGCTTAGGACGTGGGGAGAAAGACTCTATACATCTTCGACTCTATAGGT  250
      |||| |||||||||| || |||||||||||||||||||||||||||||||
seq2  CAGC-TAGGACGTGGAGAAAAAGACTCTATACATCTTCGACTCTATAGGT  231

seq1  CACAGTCTATTACAGAGGGAAGTAAAATCAGGATCTTGAAGAAGAAGAAA  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACAGTCTATTACAGAGGAAAGTAAAATCAGGATCTTGAAGAAGAAGAAA  281

seq1  ACATGGAAATGTGATGTTGCTGGATTGCCCAAAGGTTCATGCTTAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAATGTGATGTTGCTGGATTGCCCAAAGGTTCATGCTTAGCTGT  331

seq1  CTGTAAATAATATATACCATAATAGGCTGAGACATACTACATCAATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATAATATATACCATAATAGGCTGAGACATACTACATCAATTATT  381

seq1  AATTAAGCAAATACCCCTGAAATATATGGACATGCTAACCTGACATGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCAAATACCCCTGAAATATATGGACATGCTAACCTGACATGAGC  431

seq1  AATTCTCAAGGAAGACTCTCAAGTGGTTATGCACTTTGTCAAATTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAAGGAAGACTCTCAAGTGGTTATGCACTTTGTCAAATTGGCAG  481

seq1  TCATATTAACTAGTGCAACTATTGACTTCAAATTTTACATGTCTGGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAACTAGTGCAACTATTGACTTCAAATTTTACATGTCTGGTTCT  531

seq1  TATATCTTCAAAGATTCTAGATTATTGTGCAAAATCTCTTTTTTTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTCAAAGATTCTAGATTATTGTGCAAAATCTCTTTTTTTCCCTT  581

seq1  GTAGATATCTTATCCAAAATACTCTCAAAACAGAACCCCTAACTTACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATCTTATCCAAAATACTCTCAAAACAGAACCCCTAACTTACTAC  631

seq1  CTTCCTACTGTCTTTTTTATTTCAAAAAGTGTACCCCATGATATTATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTGTCTTTTTTATTTCAAAAAGTGTACCCCATGATATTATTGA  681

seq1  CCTTCAATCTTCTACTAGAATCAATTAATCCACAAATGTAATTGTGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATCTTCTACTAGAATCAATTAATCCACAAATGTAATTGTGAAGT  731

seq1  CTGAGCTCTCTTTGCTTACCACTGCCATCCTTCATTCTCCTGCTGCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTCTTTGCTTACCACTGCCATCCTTCATTCTCCTGCTGCAGTT  781

seq1  ACTTGTTAGCTGGTGTTAATAATCTGAGGCTCATCTTCCCAGTGCAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAGCTGGTGTTAATAATCTGAGGCTCATCTTCCCAGTGCAATAT  831

seq1  CCACATTAAAGTCATTTAGTCATAAGTCAGATCATGACCCTTTCATTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTAAAGTCATTTAGTCATAAGTCAGATCATGACCCTTTCATTTGT  881

seq1  GACTCCCCAAGTGTGCCTTATTGTTTTCCATTTAGAAGGTAATTCAAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCAAGTGTGCCTTATTGTTTTCCATTTAGAAGGTAATTCAAGCC  931

seq1  CCTTTATGATGTAAAACTAAGTTAATAACCTACTATTTTCAAATTTCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGATGTAAAACTAAGTTAATAACCTACTATTTTCAAATTTCTCC  981

seq1  TTTTCCTAAAATACTACTGTTTTCTTCTCATTTTAGATACTTTGCAATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAAATACTACTGTTTTCTTCTCATTTTAGATACTTTGCAATTG  1031

seq1  CTCATTCTACATAATAATTACTTTGTATATGTAATGTCAACAGGAATGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTACATAATAATTACTTTGTATATGTAATGTCAACAGGAATGTG  1081

seq1  AGGCAGATGATCACATGGAATTC  1123
      |||||||||||||||||||||||
seq2  AGGCAGATGATCACATGGAATTC  1104

seq1: chr1_114845962_114847077
seq2: B6Ng01-144G18.g_66_1164

seq1  GAATTCTTTCCATATTTTGCCATGGGCTTTATAATTTTATCTTTTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCATATTTTGCCATGGGCTTTATAATTTTATCTTTTGGAAA  50

seq1  AAGACTGCGGTGGCCTATTAGAACCCAGAGTCGAGCCTCTGCTCTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCGGTGGCCTATTAGAACCCAGAGTCGAGCCTCTGCTCTATAAT  100

seq1  TCCAGGATTGTATTGAAACTAATTTTGATTTCCAATATTTGTATATGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATTGTATTGAAACTAATTTTGATTTCCAATATTTGTATATGATT  150

seq1  TTTTAATATTATATATTTGAAAAACTTCAAGTCTCATAAAATCTGAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATTATATATTTGAAAAACTTCAAGTCTCATAAAATCTGAATCC  200

seq1  ATCTCAGTATTAACCATAAGCTACATTCTTATTTAAAAGTTCAACAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTATTAACCATAAGCTACATTCTTATTTAAAAGTTCAACAGTAT  250

seq1  GTAGAAATAGAATTTAAAAGATCTACATATGTAGAAGTAAAAGTTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATAGAATTTAAAAGATCTACATATGTAGAAGTAAAAGTTGTTTG  300

seq1  ACATTTTTGAAATGATTACTCATGGTGTGGTTTATGGAATCACCTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGAAATGATTACTCATGGTGTGGTTTATGGAATCACCTCACAA  350

seq1  AAATATAATTTAACATTAAGAGGAGGAAAGGTCATACACTGTAAAACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATTTAACATTAAGAGGAGGAAAGGTCATACACTGTAAAACTAA  400

seq1  GTTGACTTCTTTTCCTTCGCCTGTTTTTGACAAAGGCCTTAGTTGTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTTCTTTTCCTTCGCCTGTTTTTGACAAAGGCCTTAGTTGTATTA  450

seq1  AAAGAGATACTTGGAAGAGACACTTGAGGAGAAGAAAAGTACATAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATACTTGGAAGAGACACTTGAGGAGAAGAAAAGTACATAAATCA  500

seq1  CCCTGATTTGGCATAGCTTCCTGTTGGTACATTAAAAGAACCAACAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATTTGGCATAGCTTCCTGTTGGTACATTAAAAGAACCAACAAAAG  550

seq1  CCAATGTAAGGGAGAAATAACAAATTTTAACTTATAGTTCAGGAATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTAAGGGAGAAATAACAAATTTTAACTTATAGTTCAGGAATGCAG  600

seq1  TCAATCATGACAGAGAATCGTAGCACTAGGAGCTGAGAGAGCAGTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATGACAGAGAATCGTAGCACTAGGAGCTGAGAGAGCAGTTCTCA  650

seq1  TCACATCCAGTCAGTATGCAGGAAAACAAATGAATACATGATAGTGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCAGTCAGTATGCAGGAAAACAAATGAATACATGATAGTGTACC  700

seq1  CCTGGTTTACTGTTTTGTACTGGGCAGGATCCTTTGCCTAGAGAATGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTACTGTTTTGTACTGGGCAGGATCCTTTGCCTAGAGAATGTTC  750

seq1  CCACCTACAACTAATGCAGGTCTTCCACATCAACTAACTTAATCAAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACAACTAATGCAGGTCTTCCACATCAACTAACTTAATCAAGATT  800

seq1  ATCCCCCACAGGCATGTCTATAAAATTTTAGATACTGTGAAATTAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCACAGGCATGTCTATAAAATTTTAGATACTGTGAAATTAATAAT  850

seq1  TCACAATAACTATCATACACACACATACACACACACACACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAACTATCATACACACACATACACACACACACACACACACACAC  900

seq1  ACACACACCAAAACTACCACAACTACCACTGGATCCTTGATACTAGGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCAAAACTACCACAACTACCACTGGATCCTTGATACTAGGTTT  950

seq1  CTTTTCCAACAAAAGCATAAGGAAATGTTGTTGGTCAGAATCAAATCAAA  1000
      | |||||||||||||||||||| |||| |||||||||| ||| |||| ||
seq2  CCTTTCCAACAAAAGCATAAGG-AATG-TGTTGGTCAGGATC-AATC-AA  996

seq1  TATATACATACATAGACATACACACACACACACACACACACACACACACA  1050
      ||| ||| |||   ||| |||     | ||| | ||| ||||| ||||| 
seq2  TAT-TAC-TAC--TGACCTAC-----CTCAC-CCCAC-CACACGCACACT  1035

seq1  CACATATATATATATATGCCTTACCATTGTACATGAAAGTCTGATATAGA  1100
      |  |||||||||| |||  | || |||||| ||||||||||||  | |||
seq2  CCAATATATATATTTATTGCCTA-CATTGTTCATGAAAGTCTGGAAAAGA  1084

seq1  AAAGTTAGTGTGAGGA  1116
      ||||||| ||||||||
seq2  AAAGTTA-TGTGAGGA  1099