BAC Information

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BAC

Clone NameB6Ng01-144J12
Chromosome1 (Build37)
Map Location 131,888,131 - 132,047,218
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144J12.bB6Ng01-144J12.g
ACCDH942232DH942233
length1,007968
definitionDH942232|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J12, 5' end.DH942233|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,888,131 - 131,889,483)(132,046,656 - 132,047,218)
sequence
gaattcagaagtgaatataatttggctttacctctcaagacacatccata
acatctgtgtccctttgaatcctaactcctgtctatttactcattcattt
agtagaaggacttgtggaaatgccaatacagggcaactaaatctaaccaa
tgaagttaggggagatttcatgaaagtaacaaatgagctgagcttgtagg
gctctaataaatagaaaatggtcaaaaggactctgattcagaagacaaaa
tagagaccagaagccatggggaagtgtcagcaacagtggctgcagactct
ggagtaattttacagaatttgcaggacatactgatggattagaacttgag
gcaaagtgtgctaagaaagaatcatttctcaaacttgggtggctttgagg
ataaagccattagtggacagagaggacctcaatgattggacagggtcatg
agcttagttgtaggcatgcttagttaagactttccttaaggtgtttggtt
tacattctcaataaatagttgagtatttagatttgaagcacaacaaaatg
cccaatattggacagattgagatggaactgaaaaagtatagcatttcaac
tgacaaagctttaaaataacttgttttatacactatatatagtgaagtaa
atgtcatttactagttatgatattctaacttgtgcatagctatttgtata
tgcaaatatatatgtacatatatgtacatatatataaacattcattatat
aacagattgtacatgtattatttatatagaagattatatgggttatctac
agtaaaaagcatatttagttttaggctattaatatagaaggaaatcttta
agactgggcttaaatgtaactttatccattgcttttaaaatacagagctt
tcaatgagtgattttcatattagaggtaaattgctggtgactcagaaaat
gtcacttcagcattcccatctttctttgtgtgtaccactggtcttttttg
tgtctgc
gaattccttggactgcttgaaaactcatgtaaaggtctctattcatttta
aacaaataacattaataataaactaattagaaagcacaacaacaatgaat
aaaatatcattgcacagatttttttcatattctgtgtttataaaagatca
tttcttgctttcccaaaagacatacaattacattttaagggaatgtgtta
ggaatttttacaaaaataaagagtgatttcatctttccttcaaaagaaaa
gtacttattaaattagatttagaagaagttaaaattattttactgttgtt
ttgtgtattggaaggtaagacacaatagaagaaattgatacatcagtcaa
agaaaatgttaaatctaaaaattcctgacacaaaacatccaggaaatcca
ggataccatgaaaagacataaactaagaacaataggaataggagaaggtg
aagagtcctagctcaaatatccatgaaacattctcaacaaaatcatacaa
gtaaacattcctaactaaatagagatgtctataaacaaacaagaagctta
tagaatatctattagagtagaccagaaaagaaacactcctgccacataat
aagcaaaacacaaaatctacaaagcaaagaaggaatattaaaagtggtaa
gcaaaaaaggccaggtaacatacgaaggcagacctatcagagttacttcc
aacttctcaacagagactctatatgtcaaaaaggtctggacagatatctt
gcaacctctaaaaaaccacagatgccaacctagactactataccagcaaa
actttcagtcaccaaagatgtaaataacaagatatttcaagacaaatcca
aattcaagcaatgtctatccacaaacccagccctatccctccccctcaaa
aaaatactagaaggagaacttcacccatgagatactacattcaacccaca
gaaacaagtaattcctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131888131_131889483
seq2: B6Ng01-144J12.b_46_1052

seq1  GAATTCAGAAGTGAATATAATTTGGCTTTACCTCTCAAGACACATCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTGAATATAATTTGGCTTTACCTCTCAAGACACATCCATA  50

seq1  ACATCTGTGTCCCTTTGAATCCTAACTCCTGTCTATTTACTCATTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGTCCCTTTGAATCCTAACTCCTGTCTATTTACTCATTCATTT  100

seq1  AGTAGAAGGACTTGTGGAAATGCCAATACAGGGCAACTAAATCTAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGGACTTGTGGAAATGCCAATACAGGGCAACTAAATCTAACCAA  150

seq1  TGAAGTTAGGGGAGATTTCATGAAAGTAACAAATGAGCTGAGCTTGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTAGGGGAGATTTCATGAAAGTAACAAATGAGCTGAGCTTGTAGG  200

seq1  GCTCTAATAAATAGAAAATGGTCAAAAGGACTCTGATTCAGAAGACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATAAATAGAAAATGGTCAAAAGGACTCTGATTCAGAAGACAAAA  250

seq1  TAGAGACCAGAAGCCATGGGGAAGTGTCAGCAACAGTGGCTGCAGACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCAGAAGCCATGGGGAAGTGTCAGCAACAGTGGCTGCAGACTCT  300

seq1  GGAGTAATTTTACAGAATTTGCAGGACATACTGATGGATTAGAACTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATTTTACAGAATTTGCAGGACATACTGATGGATTAGAACTTGAG  350

seq1  GCAAAGTGTGCTAAGAAAGAATCATTTCTCAAACTTGGGTGGCTTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGTGCTAAGAAAGAATCATTTCTCAAACTTGGGTGGCTTTGAGG  400

seq1  ATAAAGCCATTAGTGGACAGAGAGGACCTCAATGATTGGACAGGGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCATTAGTGGACAGAGAGGACCTCAATGATTGGACAGGGTCATG  450

seq1  AGCTTAGTTGTAGGCATGCTTAGTTAAGACTTTCCTTAAGGTGTTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTTGTAGGCATGCTTAGTTAAGACTTTCCTTAAGGTGTTTGGTT  500

seq1  TACATTCTCAATAAATAGTTGAGTATTTAGATTTGAAGCACAACAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTCAATAAATAGTTGAGTATTTAGATTTGAAGCACAACAAAATG  550

seq1  CCCAATATTGGACAGATTGAGATGGAACTGAAAAAGTATAGCATTTCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATTGGACAGATTGAGATGGAACTGAAAAAGTATAGCATTTCAAC  600

seq1  TGACAAAGCTTTAAAATAACTTGTTTTATACACTATATATAGTGAAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGCTTTAAAATAACTTGTTTTATACACTATATATAGTGAAGTAA  650

seq1  ATGTCATTTACTAGTTATGATATTCTAACTTGTGCATAGCTATTTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTTACTAGTTATGATATTCTAACTTGTGCATAGCTATTTGTATA  700

seq1  TGCAAATATATATGTACATATATGTACATATATATAAACATTCATTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATATATATGTACATATATGTACATATATATAAACATTCATTATAT  750

seq1  AACAGATTGTACATGTATTATTTATATAGAAGATTATATGGGTTATCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTGTACATGTATTATTTATATAGAAGATTATATGGGTTATCTAC  800

seq1  AGTAAAAAGCATATTTAGTTTTAGGCTATTAATATAGAAGGAAATCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGCATATTTAGTTTTAGGCTATTAATATAGAAGGAAATCTTTA  850

seq1  AGACTGGGCTTAAATGTAACTTTATCCATTGCTTTTAAAATACAGAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGCTTAAATGTAACTTTATCCATTGCTTTTAAAATACAGAGCTT  900

seq1  TCAATGAGTGATTTTCATATTAGAGGTAAAATTGCTGGTGACTCAGAAAA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAATGAGTGATTTTCATATTAGAGGT-AAATTGCTGGTGACTCAGAAAA  949

seq1  TGTCACTTCAGCATTCCCATCTTTCTTTGTGTGTAACCACTGGTCTTTTC  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  TGTCACTTCAGCATTCCCATCTTTCTTTGTGTGT-ACCACTGGTCTTTTT  998

seq1  TGTGTCTGCCCCAGATCCTGAATAATGACCCGGAGGCTTATTTATTTATG  1050
      |||||||||                                         
seq2  TGTGTCTGC-----------------------------------------  1007

seq1  AATTAATGCTAAGCCTTAAGCCTAGCTTCTTCCCCAACTACCTTGTAACT  1100
                                                        
seq2  --------------------------------------------------  1007

seq1  CAATTAACCTGTTTATATTAGTCTGTGTCTGCCACATGGTTACCTCTCCT  1150
                                                        
seq2  --------------------------------------------------  1007

seq1  CAGTTTCATACATCCAACTACCTCTTTGTCTCAGTGGTGAATCTCCCAAC  1200
                                                        
seq2  --------------------------------------------------  1007

seq1  CCCCTTGTAACTGGTTACTTCCCAGAATTCTTATCTCACTGGCAGGTTCC  1250
                                                        
seq2  --------------------------------------------------  1007

seq1  CACCTTCTGTTCTCTCTGGCCTTGCTATAGGCAGTAAAGTTTTTTATTGA  1300
                                                        
seq2  --------------------------------------------------  1007

seq1  CAGGTGATTCTCTTACACAGTGCACAAGAGATTATCCCTACAATTGTGTC  1350
                                                        
seq2  --------------------------------------------------  1007

seq1  TGC  1353
         
seq2  ---  1007

seq1: chr1_132046656_132047218
seq2: B6Ng01-144J12.g_67_629 (reverse)

seq1  AATAGATATTCTATAAGCTTCTTGTTTGTTTATAGACATCTCTATTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATTCTATAAGCTTCTTGTTTGTTTATAGACATCTCTATTTAGT  50

seq1  TAGGAATGTTTACTTGTATGATTTTGTTGAGAATGTTTCATGGATATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGTTTACTTGTATGATTTTGTTGAGAATGTTTCATGGATATTTG  100

seq1  AGCTAGGACTCTTCACCTTCTCCTATTCCTATTGTTCTTAGTTTATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGACTCTTCACCTTCTCCTATTCCTATTGTTCTTAGTTTATGTCT  150

seq1  TTTCATGGTATCCTGGATTTCCTGGATGTTTTGTGTCAGGAATTTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTATCCTGGATTTCCTGGATGTTTTGTGTCAGGAATTTTTAGA  200

seq1  TTTAACATTTTCTTTGACTGATGTATCAATTTCTTCTATTGTGTCTTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTTTCTTTGACTGATGTATCAATTTCTTCTATTGTGTCTTACC  250

seq1  TTCCAATACACAAAACAACAGTAAAATAATTTTAACTTCTTCTAAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATACACAAAACAACAGTAAAATAATTTTAACTTCTTCTAAATCTA  300

seq1  ATTTAATAAGTACTTTTCTTTTGAAGGAAAGATGAAATCACTCTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAGTACTTTTCTTTTGAAGGAAAGATGAAATCACTCTTTATTT  350

seq1  TTGTAAAAATTCCTAACACATTCCCTTAAAATGTAATTGTATGTCTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAATTCCTAACACATTCCCTTAAAATGTAATTGTATGTCTTTTG  400

seq1  GGAAAGCAAGAAATGATCTTTTATAAACACAGAATATGAAAAAAATCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAAGAAATGATCTTTTATAAACACAGAATATGAAAAAAATCTGT  450

seq1  GCAATGATATTTTATTCATTGTTGTTGTGCTTTCTAATTAGTTTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATATTTTATTCATTGTTGTTGTGCTTTCTAATTAGTTTATTATT  500

seq1  AATGTTATTTGTTTAAAATGAATAGAGACCTTTACATGAGTTTTCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTGTTTAAAATGAATAGAGACCTTTACATGAGTTTTCAAGCA  550

seq1  GTCCAAGGAATTC  563
      |||||||||||||
seq2  GTCCAAGGAATTC  563