BAC Information

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BAC

Clone NameB6Ng01-144J20
Chromosome1 (Build37)
Map Location 148,277,591 - 148,332,414
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571
Downstream geneB830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144J20.bB6Ng01-144J20.g
ACCDH942248DH942249
length7871,057
definitionDH942248|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J20, 5' end.DH942249|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,331,826 - 148,332,414)(148,277,591 - 148,278,658)
sequence
gaattcttaacaacaggagctgttcttcatgtctgggaagataaaggcaa
tagagaggaagcaacatgctacattgacttgatcattccaaagtattttt
ctaaatggttaaagcacagattgcatatttaatataaagaaaggaattta
cagaatttacagtgaataagaaggcagaaggtttaatagaaggggccagt
acgtaacaaggaaaaacagatcattctataaactaccagatttataaata
tttacttttcaagcaaatgtatacctattttccctaattattctcacaaa
ttcccctgtattattcaactagatatccacatgctaataataccaacaat
gaacaaacatatatacaaattttaatctaaatactgacattatatatttc
acaaaatctttctcaaaacagttccatgactgaacataaaagcataatct
ataaaaatacgagaaaacaatgaataaaatacctagatgatcttgcattt
agaaaacagttttgatataataaataattcctgaaaaatagtaagttgta
cattattaatattaaaagcccctttatagttaagaagtgaaaggatagaa
agaagcacacttccaaaacacatatatgctaatggttagtgttaaaatat
acatgaattatataaaactcagcagtaataaaaaaatcaactgaaactag
acaaatgctttgaacaaaaacttcaccaaatatgatagataggctggtag
cttcaatctctccctctctctctctctctctctctct
gaattcaaagtctctaagataaaaacagatgaaataaatgcttcaatcta
tttccagctacaaaattacctgcatcttctggtatactgagaatgaagta
tgttaagttttgagttatatactggcattacagaaaatcaaatccatagc
acagaattatctcctttgatatgttaaaaaggagtgggactaaatgtgct
cacacattgccatagaaagcaccacaaatattgcttcctcacaagtataa
gcagaaaactataagaataaaactttttaaaaatatgataaaggtatgtt
tgaaagaatttgaatgcaatctaagcccttgagaaaagtagtccactagt
catacctcacaaatgttacatgtatgtacacaagtgaggtaaagactgat
agggaatttgaccaaaatataatgtgctcatgtattgaggaaaatataaa
ttaaaaaaaatcattgtctttcccatttgtcttctacatacaaatgtaca
cttagactcatgaaatatacaaagttgtactcatattccagacataaaaa
tataaataaaataaaacaaaaagtcttaaagaaaggcacaccaactttct
ataattaagaaatagatcagaaaagagataagaaaagaatgaaatgatgt
taaaaaattatcatagtgaactgagatcattttgtattagtgtcagaaaa
taatgagtttgttttgaaattatagggcttaaggtttgataataatagaa
gagtagagacatgtgaaagccacacaataagaaaataatctgttgtactc
acagatcagtatcagccttcacaagagaagctttcttcctgtattaggta
agaacaattacagggatccatactatattatttgcatacagggaatgatc
ttagaatactcagtcccatgaagggatgatccatcaaattcctcccatca
gctcagctcaggactctgaggaatagagcagaagatcatattatgagaga
aagatccatttgggtgaagacaccaagcagtagcatattgagacttccag
gcatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148331826_148332414
seq2: B6Ng01-144J20.b_43_631 (reverse)

seq1  CACTTCTTAACTATAAAGGGGCTTTTAATATTAATAATGTACAACTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTAACTATAAAGGGGCTTTTAATATTAATAATGTACAACTTACT  50

seq1  ATTTTTCAGGAATTATTTATTATATCAAAACTGTTTTCTAAATGCAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGGAATTATTTATTATATCAAAACTGTTTTCTAAATGCAAGAT  100

seq1  CATCTAGGTATTTTATTCATTGTTTTCTCGTATTTTTATAGATTATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGGTATTTTATTCATTGTTTTCTCGTATTTTTATAGATTATGCTT  150

seq1  TTATGTTCAGTCATGGAACTGTTTTGAGAAAGATTTTGTGAAATATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCAGTCATGGAACTGTTTTGAGAAAGATTTTGTGAAATATATAA  200

seq1  TGTCAGTATTTAGATTAAAATTTGTATATATGTTTGTTCATTGTTGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTATTTAGATTAAAATTTGTATATATGTTTGTTCATTGTTGGTAT  250

seq1  TATTAGCATGTGGATATCTAGTTGAATAATACAGGGGAATTTGTGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCATGTGGATATCTAGTTGAATAATACAGGGGAATTTGTGAGAAT  300

seq1  AATTAGGGAAAATAGGTATACATTTGCTTGAAAAGTAAATATTTATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGGAAAATAGGTATACATTTGCTTGAAAAGTAAATATTTATAAAT  350

seq1  CTGGTAGTTTATAGAATGATCTGTTTTTCCTTGTTACGTACTGGCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTTTATAGAATGATCTGTTTTTCCTTGTTACGTACTGGCCCCTT  400

seq1  CTATTAAACCTTCTGCCTTCTTATTCACTGTAAATTCTGTAAATTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAACCTTCTGCCTTCTTATTCACTGTAAATTCTGTAAATTCCTTT  450

seq1  CTTTATATTAAATATGCAATCTGTGCTTTAACCATTTAGAAAAATACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATTAAATATGCAATCTGTGCTTTAACCATTTAGAAAAATACTTT  500

seq1  GGAATGATCAAGTCAATGTAGCATGTTGCTTCCTCTCTATTGCCTTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATCAAGTCAATGTAGCATGTTGCTTCCTCTCTATTGCCTTTATC  550

seq1  TTCCCAGACATGAAGAACAGCTCCTGTTGTTAAGAATTC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGACATGAAGAACAGCTCCTGTTGTTAAGAATTC  589

seq1: chr1_148277591_148278658
seq2: B6Ng01-144J20.g_68_1124

seq1  GAATTCAAAGTCTCTAAGATAAAAACAGATGAAATAAATGCTTCAATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCTCTAAGATAAAAACAGATGAAATAAATGCTTCAATCTA  50

seq1  TTTCCAGCTACAAAATTACCTGCATCTTCTGGTATACTGAGAATGAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTACAAAATTACCTGCATCTTCTGGTATACTGAGAATGAAGTA  100

seq1  TGTTAAGTTTTGAGTTATATACTGGCATTACAGAAAATCAAATCCATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTTTTGAGTTATATACTGGCATTACAGAAAATCAAATCCATAGC  150

seq1  ACAGAATTATCTCCTTTGATATGTTAAAAAGGAGTGGGACTAAATGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTATCTCCTTTGATATGTTAAAAAGGAGTGGGACTAAATGTGCT  200

seq1  CACACATTGCCATAGAAAGCACCACAAATATTGCTTCCTCACAAGTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTGCCATAGAAAGCACCACAAATATTGCTTCCTCACAAGTATAA  250

seq1  GCAGAAAACTATAAGAATAAAACTTTTTAAAAATATGATAAAGGTATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAACTATAAGAATAAAACTTTTTAAAAATATGATAAAGGTATGTT  300

seq1  TGAAAGAATTTGAATGCAATCTAAGCCCTTGAGAAAAGTAGTCCACTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAATTTGAATGCAATCTAAGCCCTTGAGAAAAGTAGTCCACTAGT  350

seq1  CATACCTCACAAATGTTACATGTATGTACACAAGTGAGGTAAAGACTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCACAAATGTTACATGTATGTACACAAGTGAGGTAAAGACTGAT  400

seq1  AGGGAATTTGACCAAAATATAATGTGCTCATGTATTGAGGAAAATATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTTGACCAAAATATAATGTGCTCATGTATTGAGGAAAATATAAA  450

seq1  TTAAAAAAAATCATTGTCTTTCCCATTTGTCTTCTACATACAAATGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAATCATTGTCTTTCCCATTTGTCTTCTACATACAAATGTACA  500

seq1  CTTAGACTCATGAAATATACAAAGTTGTACTCATATTCCAGACATAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTCATGAAATATACAAAGTTGTACTCATATTCCAGACATAAAAA  550

seq1  TATAAATAAAATAAAACAAAAAGTCTTAAAGAAAGGCACACCAACTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAAATAAAACAAAAAGTCTTAAAGAAAGGCACACCAACTTTCT  600

seq1  ATAATTAAGAAATAGATCAGAAAAGAGATAAGAAAAGAATGAAATGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAGAAATAGATCAGAAAAGAGATAAGAAAAGAATGAAATGATGT  650

seq1  TAAAAAATTATCATAGTGAACTGAGATCATTTTGTATTAGTGTCAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTATCATAGTGAACTGAGATCATTTTGTATTAGTGTCAGAAAA  700

seq1  TAATGAGTTTGTTTTGAAATTATAGGGCTTAAGGTTTGATAATAATAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTTGTTTTGAAATTATAGGGCTTAAGGTTTGATAATAATAGAA  750

seq1  GAGTAGAGACATGTGAAAGCCACACAATAAGAAAATAATCTGTTGTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGACATGTGAAAGCCACACAATAAGAAAATAATCTGTTGTACTC  800

seq1  ACAGATCAGTATCAGCCTTCACAAGAGAAGC-TCCCTCCTGTATTAGGTA  849
      ||||||||||||||||||||||||||||||| | | ||||||||||||||
seq2  ACAGATCAGTATCAGCCTTCACAAGAGAAGCTTTCTTCCTGTATTAGGTA  850

seq1  AGAACAATTACAGGGACCCATACTATATTATTTGCATACAGGGAATGATC  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAACAATTACAGGGATCCATACTATATTATTTGCATACAGGGAATGATC  900

seq1  TTAGAATACTCAGTCCCATGAAGGAATGATCCATCAAATTCCTCCCATCA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAGAATACTCAGTCCCATGAAGGGATGATCCATCAAATTCCTCCCATCA  950

seq1  GGCTCAGGCTCAGGGACTCTGAGGAATAGAAGGCAGAAAGATCATATTAT  999
       ||||| ||||| |||||||||||||||||  |||| |||||||||||| 
seq2  -GCTCA-GCTCA-GGACTCTGAGGAATAGA--GCAG-AAGATCATATTA-  993

seq1  TGAGAGAAAAGATCCAATTTGGGTGAAAGACACCAAGCCAGTAGCATATT  1049
      |||||| |||||||| ||||||||| ||||||||||| ||||||||||||
seq2  TGAGAG-AAAGATCC-ATTTGGGTG-AAGACACCAAG-CAGTAGCATATT  1039

seq1  GAGACTTCACAGGCATGAC  1068
      |||||||| ||||||||||
seq2  GAGACTTC-CAGGCATGAC  1057