BAC Information

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BAC

Clone NameB6Ng01-144K11
Chromosome1 (Build37)
Map Location 18,816,747 - 18,936,165
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
Downstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144K11.bB6Ng01-144K11.g
ACCDH942274DH942275
length1,000953
definitionDH942274|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K11, 5' end.DH942275|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,816,747 - 18,817,714)(18,935,551 - 18,936,165)
sequence
gaattctcaatagagagatctcaaatggctaagaaacacttaaagaaata
ttcaagatccttatccatcacaaacatgcacattgcctcttcataagctg
tttgtttctttgtttctgcccattaaaccctgacataggagtatagctcc
aatgcatggaatatattagaatttaaatgaatgttacatcatcaaacatt
atccaacagattcatgctgtcaagataactcactgaatataaatacttgc
tggtgaaatcttaagatctgagtttggatacccagttgcatccacataaa
aaaattggctgcgcatttgtaacactagaactgcgaaggagtagagacag
gggtaccagtgatggctagtctcctgatccccaggccagctaattctaga
tatagtaaaagactatcttgagagaagttaaagaatggcatgcagtgttt
gaaacccttccctgtcctccacacatgtgtgcacatggacacttacatac
aaacatgtgcatatcctccaacactcacaaatatataaaaacattttttt
agcttacacttggtatatttttctacaatcacttctcaatcatttctcct
tgttaggtaccaagtaattaatttcttatacctgttacacttgataagca
aacataaaaacctgaattaaatgtcagtgtttcagaaaatgaaattatta
taacagaaaacttatatatagttagagtattaaagtcagtcattaggact
tgcaagattgcccacaagttgggaatacttaccattaagtttgtcagtct
aagtttgattcctaggttccatacagtaagagagaaatgccctgtgactt
tcccaagcaaacagtctcactcaagaacccacagacatgtacacactcag
acactgaaagaaaggagaaagaaggaaagaaagaaagaaagaaagaaaga
aagaaggaaaggaaagaagaaaggaaagaaagaaagaaaggaaaggaaag

gaattccttccttagaggaacctactactactgttgttttattaaactga
taaatggccaatcagccttttccatttatatttgcagattaaacacacat
aaatacaccatcaaaaagtaaaattataaattacaagtatccaagggcca
cagagaactctccatgccacaggaaccctagcacatccaggatctcagga
tcactggtgagtggaatgtaagcaatatcagctccaaagaatctcaaagg
ttcttgtgcaagcagggacaaagacaaagaaaccctgaccgatcagaggc
tgggattctttctgatggggccagcacctccatcttccatctgaacctgg
cggaggacaccaaggtccccagaggactctccacacagaaggacccctag
aacacccagaacttcatgattactggagagcacatgtgcgacagaagcaa
cataacttctcagacagggtcccttcatgccttcatcctcagccaggagg
cagatctgagacccagaaacctgggcaccctccttgccagaggagagttg
gcctatagggagggctctgaccccaggactcaggaggtggatcagagctt
cagatttctggacacctaccctgtaagaagagagcttacctgcaaagagt
gctctgacctttgggactcaggtgagaattagattcccaggagtgctgag
agaggctaacagaatcacaggaggaacaagctccagccagacacagctag
aacattaacaccagagattaccaaatggccaaaggcaaaggtaagaatct
tactaacagaaaccaagaacactgggcatcatcagaacacagtatgccca
ccatcttaagtcctggataccccacacacccaaaagcagactcagattta
aactatatctcatgatggtgtagagattttaagaagggaattaatgactc
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18816747_18817714
seq2: B6Ng01-144K11.b_41_1040

seq1  GAATTCTCAATAGAGAGATCTCAAATGGCTAAGAAACACTTAAAGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATAGAGAGATCTCAAATGGCTAAGAAACACTTAAAGAAATA  50

seq1  TTCAAGATCCTTATCCATCACAAACATGCACATTGCCTCTTCATAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATCCTTATCCATCACAAACATGCACATTGCCTCTTCATAAGCTG  100

seq1  TTTGTTTCTTTGTTTCTGCCCATTAAACCCTGACATAGGAGTATAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTGTTTCTGCCCATTAAACCCTGACATAGGAGTATAGCTCC  150

seq1  AATGCATGGAATATATTAGAATTTAAATGAATGTTACATCATCAAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGGAATATATTAGAATTTAAATGAATGTTACATCATCAAACATT  200

seq1  ATCCAACAGATTCATGCTGTCAAGATAACTCACTGAATATAAATACTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAGATTCATGCTGTCAAGATAACTCACTGAATATAAATACTTGC  250

seq1  TGGTGAAATCTTAAGATCTGAGTTTGGATACCCAGTTGCATCCACATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATCTTAAGATCTGAGTTTGGATACCCAGTTGCATCCACATAAA  300

seq1  AAAATTGGCTGCGCATTTGTAACACTAGAACTGCGAAGGAGTAGAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGCTGCGCATTTGTAACACTAGAACTGCGAAGGAGTAGAGACAG  350

seq1  GGGTACCAGTGATGGCTAGTCTCCTGATCCCCAGGCCAGCTAATTCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCAGTGATGGCTAGTCTCCTGATCCCCAGGCCAGCTAATTCTAGA  400

seq1  TATAGTAAAAGACTATCTTGAGAGAAGTTAAAGAATGGCATGCAGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAAAAGACTATCTTGAGAGAAGTTAAAGAATGGCATGCAGTGTTT  450

seq1  GAAACCCTTCCCTGTCCTCCACACATGTGTGCACATGGACACTTACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTTCCCTGTCCTCCACACATGTGTGCACATGGACACTTACATAC  500

seq1  AAACATGTGCATATCCTCCAACACTCACAAATATATAAAAACATTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTGCATATCCTCCAACACTCACAAATATATAAAAACATTTTTTT  550

seq1  AGCTTACACTTGGTATATTTTTCTACAATCACTTCTCAATCATTTCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACACTTGGTATATTTTTCTACAATCACTTCTCAATCATTTCTCCT  600

seq1  TGTTAGGTACCAAGTAATTAATTTCTTATACCTGTTACACTTGATAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTACCAAGTAATTAATTTCTTATACCTGTTACACTTGATAAGCA  650

seq1  AACATAAAAACCTGAATTAAATGTCAGTGTTTCAGAAAATGAAATTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAAACCTGAATTAAATGTCAGTGTTTCAGAAAATGAAATTATTA  700

seq1  TAACAGAAAACTTATATATAGTTAGAGTATTAAAGTCAGTCATTAGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAAACTTATATATAGTTAGAGTATTAAAGTCAGTCATTAGGACT  750

seq1  TGCAAGATTGCCCACAAGTTGGGAATACTTACCATTAAGTTTGTCAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATTGCCCACAAGTTGGGAATACTTACCATTAAGTTTGTCAGTCT  800

seq1  AAGTTTGATTCCTAGGTTCCATACAGTAAGAGAGAAATGCCCTGTGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGATTCCTAGGTTCCATACAGTAAGAGAGAAATGCCCTGTGACTT  850

seq1  TCCCAAGCAAACAGTCTCACTCAAGAACCCACAGACATGTACACACTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCAAACAGTCTCACTCAAGAACCCACAGACATGTACACACTCAG  900

seq1  ACACTGAAAGAAAGGAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAG  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAGAAAGG-AGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAG  949

seq1  AAAGAAAGGAAAGGAAAG--------------------------------  968
      |||| |||||||||||||                                
seq2  AAAG-AAGGAAAGGAAAGAAGAAAGGAAAGAAAGAAAGAAAGGAAAGGAA  998

seq1  --  968
        
seq2  AG  1000

seq1: chr1_18935551_18936165
seq2: B6Ng01-144K11.g_68_682 (reverse)

seq1  GTGTCCAGAAATCTGAAGCTCTGATCCACCTCCTGAGTCCTGGGGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGAAATCTGAAGCTCTGATCCACCTCCTGAGTCCTGGGGTCAGA  50

seq1  GCCCTCCCTATAGGCCAACTCTCCTCTGGCAAGGAGGGTGCCCAGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCTATAGGCCAACTCTCCTCTGGCAAGGAGGGTGCCCAGGTTTC  100

seq1  TGGGTCTCAGATCTGCCTCCTGGCTGAGGATGAAGGCATGAAGGGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCAGATCTGCCTCCTGGCTGAGGATGAAGGCATGAAGGGACCCT  150

seq1  GTCTGAGAAGTTATGTTGCTTCTGTCGCACATGTGCTCTCCAGTAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGAAGTTATGTTGCTTCTGTCGCACATGTGCTCTCCAGTAATCAT  200

seq1  GAAGTTCTGGGTGTTCTAGGGGTCCTTCTGTGTGGAGAGTCCTCTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTGGGTGTTCTAGGGGTCCTTCTGTGTGGAGAGTCCTCTGGGGA  250

seq1  CCTTGGTGTCCTCCGCCAGGTTCAGATGGAAGATGGAGGTGCTGGCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGTCCTCCGCCAGGTTCAGATGGAAGATGGAGGTGCTGGCCCCA  300

seq1  TCAGAAAGAATCCCAGCCTCTGATCGGTCAGGGTTTCTTTGTCTTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAATCCCAGCCTCTGATCGGTCAGGGTTTCTTTGTCTTTGTCC  350

seq1  CTGCTTGCACAAGAACCTTTGAGATTCTTTGGAGCTGATATTGCTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCACAAGAACCTTTGAGATTCTTTGGAGCTGATATTGCTTACAT  400

seq1  TCCACTCACCAGTGATCCTGAGATCCTGGATGTGCTAGGGTTCCTGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCACCAGTGATCCTGAGATCCTGGATGTGCTAGGGTTCCTGTGGC  450

seq1  ATGGAGAGTTCTCTGTGGCCCTTGGATACTTGTAATTTATAATTTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGTTCTCTGTGGCCCTTGGATACTTGTAATTTATAATTTTACTT  500

seq1  TTTGATGGTGTATTTATGTGTGTTTAATCTGCAAATATAAATGGAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGTGTATTTATGTGTGTTTAATCTGCAAATATAAATGGAAAAGG  550

seq1  CTGATTGGCCATTTATCAGTTTAATAAAACAACAGTAGTAGTAGGTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGCCATTTATCAGTTTAATAAAACAACAGTAGTAGTAGGTTCCT  600

seq1  CTAAGGAAGGAATTC  615
      |||||||||||||||
seq2  CTAAGGAAGGAATTC  615