BAC Information

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BAC

Clone NameB6Ng01-144L01
Chromosome1 (Build37)
Map Location 133,972,678 - 134,109,583
singlet/doubletdoublet
Overlap genePctk3, LOC100042221
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4
Downstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144L01.bB6Ng01-144L01.g
ACCDH942299DH942300
length7961,113
definitionDH942299|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L01, 5' end.DH942300|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,972,678 - 133,973,469)(134,108,463 - 134,109,583)
sequence
gaattccaccccaagccctgcagtcacagcctgaatgtgtccaggattgt
ggccagaggggtctcatctgcaggaatggagacccagtgtcctaaaatgg
cgagagttgtgactcctacagagagaaaatgtcaacagaaggcagcatag
gcgccagtccccataaattcgttttgggggggaggggatgaagaaaaaat
atatatatatattcattcattagggaacagaaatcctttctcggatggga
tgtgagaagccagtccttctagtttgtgtttatctccccctcccacttct
ccccaacaggtaacagagaatgactttgaacttctgaccttctggcttcc
acctcctgaacactagagttgcaggcatgcgccaccaaacttggtgtaaa
caatgctgaggactgaacctaaggctttgtgtgtgctaggctagcactct
gccctactacatccccagcaatctccagcaatcccccgtgaattcaacca
tacacaaacagccctcctggcttggcaaaacacaagcgaggcctagcagc
gaaaatatgtctgaagaacttgctagaaatgtagatgctaagtcttgctg
ggagagaaacaagatgagactcagtggcagtgtctaagcagccttcagag
gcttggggggtggctggggtttatagtcagtggtttgcagctatgaggag
gaagtttgcctccccatagacttctcaacagtacccatttgctctttgaa
aacaccaaagattcttgattctcaggcagctctcacacccttgcag
gaattctctacaggcctgacattggggagcaagtcattttttctgctgct
ttctgacccaagggttaggcccaccccagtgctgaccaacccacatagaa
ttcctcagtttgtgtcctcctcggaatggcttatagggccaatgaatgtg
ggtcatgtcaacttcaggcttccacatagaggctctgatggctctcttgg
cagtggaaattgacccaccttgtaactaggagggtataggtgcagaaaac
ttacaggttgggggctgtcagggtcccgggacacatggacacggacagag
gaaatgaaaactggacagtttcctcttgtccttacagactttgattgatt
cctgtaggacaggaacggccgacccgtcatcttgaagacacagctcccag
agctaagagtaaagtggccaaaagaagagctgctacatgcaagcacacac
ccctcaaaattcctgacgccaccttccctggtcccaggcttcgcgcacgc
gcattaggccgcccccgcgcagcttggttttaaactcgtggcagacggaa
ctcgacttaaaaataactgttttgacagttgcgatgtaaatatgtgagtg
acgcgtggggctgtttttccttcgagcttctcccattccccgggccaatc
ctacaccccaccccaccccggctccgctgaggctgagatgactagagcgc
ctcctgcaggatactcagcacactgcagtggaagaattcccttccaacac
accacaccgcacccaccattcctgtttttgcagttttgagatgaaccttg
ctatttatcacagactgcccttcaattcacaatcctgtgtctcagccttc
tcagtgctgggattaacaggcgtgcgcagccctccttcacaaccccatac
ctacccgtcttcagttcagtttgacctgtatttactagtctctcctctac
acccagcactgcgctagctacagtagacatgtgagagatacgaaggcaga
ctggctatttgtaacgcttcaatcgagcgtctcagttaccgtatcttgga
agcttactgtccaggccagggtactagctagggacgcctgaacaagttac
tttactcagcgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133972678_133973469
seq2: B6Ng01-144L01.b_44_839

seq1  GAATTCCACCCCAAGCCCTGCAGTCACAGCCTGAATGTGTCCAGGATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCCAAGCCCTGCAGTCACAGCCTGAATGTGTCCAGGATTGT  50

seq1  GGCCAGAGGGGTCTCATCTGCAGGAATGGAGACCCAGTGTCCTAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGGGTCTCATCTGCAGGAATGGAGACCCAGTGTCCTAAAATGG  100

seq1  CGAGAGTTGTGACTCCTACAGAGAGAAAATGTCAACAGAAGGCAGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGTTGTGACTCCTACAGAGAGAAAATGTCAACAGAAGGCAGCATAG  150

seq1  GCGCCAGTCCCCATAAATTCGTTTTGGGGGGGAGGGGATGAAGAAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGTCCCCATAAATTCGTTTTGGGGGGGAGGGGATGAAGAAAAAAT  200

seq1  ATATATATATATTCATTCATTAGGGAACAGAAATCCTTTCTCGGATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTCATTCATTAGGGAACAGAAATCCTTTCTCGGATGGGA  250

seq1  TGTGAGAAGCCAGTCCTTCTAGTTTGTGTTTATCTCCCCCTCCCACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGCCAGTCCTTCTAGTTTGTGTTTATCTCCCCCTCCCACTTCT  300

seq1  CCCCAACAGGTAACAGAGAATGACTTTGAACTTCTGACCTTCTGGCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAGGTAACAGAGAATGACTTTGAACTTCTGACCTTCTGGCTTCC  350

seq1  ACCTCCTGAACACTAGAGTTGCAGGCATGCGCCACCAAACTTGGTGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGAACACTAGAGTTGCAGGCATGCGCCACCAAACTTGGTGTAAA  400

seq1  CAATGCTGAGGACTGAACCTAAGGCTTTGTGTGTGCTAGGCTAGCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGAGGACTGAACCTAAGGCTTTGTGTGTGCTAGGCTAGCACTCT  450

seq1  GCCCTACTACATCCCCAGCAATCTCCAGCAATCCCCCGTGAATTCAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACTACATCCCCAGCAATCTCCAGCAATCCCCCGTGAATTCAACCA  500

seq1  TACACAAACAGCCCTCCTGGCTTGGCAAAACACAAGCGAGGCCTAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAACAGCCCTCCTGGCTTGGCAAAACACAAGCGAGGCCTAGCAGC  550

seq1  GAAAATATGTCTGAAGAACTTGCTAGAAATGTAGATGCTAAGTCTTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGTCTGAAGAACTTGCTAGAAATGTAGATGCTAAGTCTTGCTG  600

seq1  GGAGAGAAACAAGATGAGACTCAGTGGCAGTGTCTAAGCAGCCTTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACAAGATGAGACTCAGTGGCAGTGTCTAAGCAGCCTTCAGAG  650

seq1  GCTTGGGGGGTGGCTGGGGTTTATAGTCAGTGGTTTGCAGCTATGAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGGTGGCTGGGGTTTATAGTCAGTGGTTTGCAGCTATGAGGAG  700

seq1  GAAGTTTGCCT-CCCATAGACTTCTCAACAGTACCCA-TTGCTCTTTGAA  748
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  GAAGTTTGCCTCCCCATAGACTTCTCAACAGTACCCATTTGCTCTTTGAA  750

seq1  AACACCAGAGATTC-TGATTCTCAGGCAGCTCTCACACCC-TGCAG  792
      ||||||| |||||| ||||||||||||||||||||||||| |||||
seq2  AACACCAAAGATTCTTGATTCTCAGGCAGCTCTCACACCCTTGCAG  796

seq1: chr1_134108463_134109583
seq2: B6Ng01-144L01.g_65_1177 (reverse)

seq1  CGCGCTGAGTAAGGTAACTTTGTTCAGGCGTTCTCCTAGCTTAGTACCTG  50
      |||||||||||| ||||| ||||||||||||   |||||| |||||||  
seq2  CGCGCTGAGTAAAGTAAC-TTGTTCAGGCGT--CCCTAGC-TAGTACCCT  46

seq1  GCCCTGGGCAGGTAGGTGTTCAAGATACGGTAACTGAGACGCTCGGTTGG  100
      | ||||| || ||| |  | ||||||||||||||||||||||||| || |
seq2  GGCCTGGACA-GTAAGCTTCCAAGATACGGTAACTGAGACGCTCGATT-G  94

seq1  AAGCGTTACAAATAGCCAGTCTGCCTTTCGTATCTCTCACATGTTCTACT  150
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  AAGCGTTACAAATAGCCAGTCTGCC-TTCGTATCTCTCACATG-TCTACT  142

seq1  GTAGCTAGCGCAGTGCTGGGTGTAGAGGAGAGACTTAGTAAATACAGGTC  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTAGCTAGCGCAGTGCTGGGTGTAGAGGAGAGAC-TAGTAAATACAGGTC  191

seq1  AAACTGAACTGAAGACGGGTAGGTATGGGGTTGTG-AGGAGGGCTGCGCA  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACTGAACTGAAGACGGGTAGGTATGGGGTTGTGAAGGAGGGCTGCGCA  241

seq1  CGCCTGTTAATCCCAGCACTGAGAAGGCTGAGACACAGGATTGTGAATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTTAATCCCAGCACTGAGAAGGCTGAGACACAGGATTGTGAATTG  291

seq1  AAGGGCAGTCTGTGATAAATAGCAAGGTTCATCTCAAAACTGCAAAAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGTCTGTGATAAATAGCAAGGTTCATCTCAAAACTGCAAAAACA  341

seq1  GGAATGGTGGGTGCGGTGTGGTGTGTTGGAAGGGAATTCTTCCACTGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTGGGTGCGGTGTGGTGTGTTGGAAGGGAATTCTTCCACTGCAG  391

seq1  TGTGCTGAGTATCCTGCAGGAGGCGCTCTAGTCATCTCAGCCTCAGCGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAGTATCCTGCAGGAGGCGCTCTAGTCATCTCAGCCTCAGCGGA  441

seq1  GCCGGGGTGGGGTGGGGTGTAGGATTGGCCCGGGGAATGGGAGAAGCTCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGTGGGGTGGGGTGTAGGATTGGCCCGGGGAATGGGAGAAGCTCG  491

seq1  AAGGAAAAACAGCCCCACGCGTCACTCACATATTTACATCGCAACTGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAACAGCCCCACGCGTCACTCACATATTTACATCGCAACTGTCA  541

seq1  AAACAGTTATTTTTAAGTCGAGTTCCGTCTGCCACGAGTTTAAAACCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTATTTTTAAGTCGAGTTCCGTCTGCCACGAGTTTAAAACCAAG  591

seq1  CTGCGCGGGGGCGGCCTAATGCGCGTGCGCGAAGCCTGGGACCAGGGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCGGGGGCGGCCTAATGCGCGTGCGCGAAGCCTGGGACCAGGGAAG  641

seq1  GTGGCGTCAGGAATTTTGAGGGGTGTGTGCTTGCATGTAGCAGCTCTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGTCAGGAATTTTGAGGGGTGTGTGCTTGCATGTAGCAGCTCTTCT  691

seq1  TTTGGCCACTTTACTCTTAGCTCTGGGAGCTGTGTCTTCAAGATGATGGG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTGGCCACTTTACTCTTAGCTCTGGGAGCTGTGTCTTCAAGATGACGGG  741

seq1  TCGGCCGTTCCTGTCCTACAGGAATCAATCAAAGTCTGTAAGGACAAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCGTTCCTGTCCTACAGGAATCAATCAAAGTCTGTAAGGACAAGAG  791

seq1  GAAACTGTCCAGTTTTCATTTCCTCTGTCCGTGTCCATGTGTCCCGGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTCCAGTTTTCATTTCCTCTGTCCGTGTCCATGTGTCCCGGGAC  841

seq1  CCTGACAGCCCCCAACCTGTAAGTTTTCTGCACCTATACCCTCCTAGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGCCCCCAACCTGTAAGTTTTCTGCACCTATACCCTCCTAGTTA  891

seq1  CAAGGTGGGTCAATTTCCACTGCCAAGAGAGCCATCAGAGCCTCTATGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGGTCAATTTCCACTGCCAAGAGAGCCATCAGAGCCTCTATGTG  941

seq1  GAAGCCTGAAGTTGACATGACCCACATTCATTGGCCCTATAAGCCATTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGAAGTTGACATGACCCACATTCATTGGCCCTATAAGCCATTCC  991

seq1  GAGGAGGACACAAACTGAGGAATTCTATGTGGGTTGGTCAGCACTGGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGACACAAACTGAGGAATTCTATGTGGGTTGGTCAGCACTGGGGT  1041

seq1  GGGCCTAACCCTTGGGTCAGAAAGCAGCAGAAAAAATGACTTGCTCCCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAACCCTTGGGTCAGAAAGCAGCAGAAAAAATGACTTGCTCCCCA  1091

seq1  ATGTCAGGCCTGTAGAGAATTC  1121
      ||||||||||||||||||||||
seq2  ATGTCAGGCCTGTAGAGAATTC  1113