BAC Information

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BAC

Clone NameB6Ng01-144M17
Chromosome1 (Build37)
Map Location 24,670,785 - 24,878,060
singlet/doubletdoublet
Overlap geneLmbrd1
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144M17.bB6Ng01-144M17.g
ACCDH942373DH942374
length6201,009
definitionDH942373|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M17, 5' end.DH942374|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,877,441 - 24,878,060)(24,670,785 - 24,671,792)
sequence
gaattccaagagcaaatcttcaccggagatgcaaaatcatcaggaacacc
ccagtcaattcgacaaatagattcacttggagagaggtgcactcagagtc
acagagcctgacattctgcacgaagtgtgccactaacttccctctgtgac
ttgggggcaaccacaacctggctgaggaaatcaaagcaatctctactgaa
gagttgcttctcaaactttaaatgcatgcaaattaccttggaaacttgtg
aaaatgtggattctgcttagggggaatgaagtctgcatttcaaacaaggt
ttcggttaattcctatactgctggtctgtacgccactctaagaagcgagg
gactagagtaaagcaaactacataagggatcctgggcaagctgcaagctg
tgacactaagagagagactctgctacataaattgagtcttaaggatgctc
aaaatcaaggtaagttacctgtgttcaaagccaggaatatagccagaatc
tcattaactaatgattaaaagaatagatggaatccacctctaatagatat
aaaatatataatatatatataatatgtataatatatattatgtataatat
atatataatatatatgtgtg
gaattccacacaccctagcttaggggtgtggaattcagcatagctccata
aaaacccctagcttccgagcctcttggccgacatctgttatctcctgtgt
gggatgcatgtcagtccagagttcggtcattaaactacctcgtgtaattc
catcaagatggtccttcgtgattctttgggtgcccgccgaattgggaatt
gagtggggggttccccactaggttctatcaatgtcacagtaagtgaacat
gctggttaatgagtacagttctggataatcacaaaaaaatgctgttttaa
ttagattctttttcttagttataaagacagaggttcctgagaatgcctta
agtcatgtggagtttattaaaaggctccatgtgggagtaagtaaaacaga
cattgtgctcattcattgtagcttcctgccaatttaagaaatgcatcaaa
ccaggcctggaagaagagctagactcttccttggtagaactgagtttcct
caacttcaggaatgtgaaaaacctattctttctttcatcaatgttccact
cataatatttttatcccttatataactgtcctgttgactaaatttccatt
tgtctccttctcattcgtagcttgtacttcctgcttctttctcctggtgt
tgtattactcagggactctgtcctttgcctctgctgccagatgttggcaa
ctgtcttctccttgtacacctttcttctgctctgcttactgatcaactcc
cactgcacccttccttaaagctttcttatttatcccccttttcagcatgg
gacaaagctttgggacttcccttcctgttccactatttcatatatagact
ggctgctctcttcttacccagggtcaccatcatttcaaggagccaaaatc
atagagaccaatccatgactaccatgtgtttgactgtcgtctctcataaa
gggttatggttgggttcttgaagcctggaggacatgggataataggtctg
accaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24877441_24878060
seq2: B6Ng01-144M17.b_48_667 (reverse)

seq1  CACACATATATATTATATATATATTATACATAATATATATTATACATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATATTATATATATATTATACATAATATATATTATACATATT  50

seq1  ATATATATATTATATATTTTATATCTATTAGAGGTGGATTCCATCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATTATATATTTTATATCTATTAGAGGTGGATTCCATCTATTC  100

seq1  TTTTAATCATTAGTTAATGAGATTCTGGCTATATTCCTGGCTTTGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCATTAGTTAATGAGATTCTGGCTATATTCCTGGCTTTGAACAC  150

seq1  AGGTAACTTACCTTGATTTTGAGCATCCTTAAGACTCAATTTATGTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACTTACCTTGATTTTGAGCATCCTTAAGACTCAATTTATGTAGCA  200

seq1  GAGTCTCTCTCTTAGTGTCACAGCTTGCAGCTTGCCCAGGATCCCTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTCTCTTAGTGTCACAGCTTGCAGCTTGCCCAGGATCCCTTATG  250

seq1  TAGTTTGCTTTACTCTAGTCCCTCGCTTCTTAGAGTGGCGTACAGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCTTTACTCTAGTCCCTCGCTTCTTAGAGTGGCGTACAGACCAG  300

seq1  CAGTATAGGAATTAACCGAAACCTTGTTTGAAATGCAGACTTCATTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGGAATTAACCGAAACCTTGTTTGAAATGCAGACTTCATTCCCC  350

seq1  CTAAGCAGAATCCACATTTTCACAAGTTTCCAAGGTAATTTGCATGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAGAATCCACATTTTCACAAGTTTCCAAGGTAATTTGCATGCATT  400

seq1  TAAAGTTTGAGAAGCAACTCTTCAGTAGAGATTGCTTTGATTTCCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGAGAAGCAACTCTTCAGTAGAGATTGCTTTGATTTCCTCAGC  450

seq1  CAGGTTGTGGTTGCCCCCAAGTCACAGAGGGAAGTTAGTGGCACACTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTGGTTGCCCCCAAGTCACAGAGGGAAGTTAGTGGCACACTTCG  500

seq1  TGCAGAATGTCAGGCTCTGTGACTCTGAGTGCACCTCTCTCCAAGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATGTCAGGCTCTGTGACTCTGAGTGCACCTCTCTCCAAGTGAAT  550

seq1  CTATTTGTCGAATTGACTGGGGTGTTCCTGATGATTTTGCATCTCCGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTCGAATTGACTGGGGTGTTCCTGATGATTTTGCATCTCCGGTG  600

seq1  AAGATTTGCTCTTGGAATTC  620
      ||||||||||||||||||||
seq2  AAGATTTGCTCTTGGAATTC  620

seq1: chr1_24670785_24671792
seq2: B6Ng01-144M17.g_66_1074

seq1  GAATTCCACACACCCTAGCTTAGGGGTGTGGAATTCAGCATAGCTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACACCCTAGCTTAGGGGTGTGGAATTCAGCATAGCTCCATA  50

seq1  AAAACCCCTAGCTTCCGAGCCTCTTGGCCGACATCTGTTATCTCCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCTAGCTTCCGAGCCTCTTGGCCGACATCTGTTATCTCCTGTGT  100

seq1  GGGATGCATGTCAGTCCAGAGTTCGGTCATTAAACTACCTCGTGTAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCATGTCAGTCCAGAGTTCGGTCATTAAACTACCTCGTGTAATTC  150

seq1  CATCAAGATGGTCCTTCGTGATTCTTTGGGTGCCCGCCGAATTGGGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGATGGTCCTTCGTGATTCTTTGGGTGCCCGCCGAATTGGGAATT  200

seq1  GAGTGGGGGGTTCCCCACTAGGTTCTATCAATGTCACAGTAAGTGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGGGTTCCCCACTAGGTTCTATCAATGTCACAGTAAGTGAACAT  250

seq1  GCTGGTTAATGAGTACAGTTCTGGATAATCACAAAAAAATGCTGTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTAATGAGTACAGTTCTGGATAATCACAAAAAAATGCTGTTTTAA  300

seq1  TTAGATTCTTTTTCTTAGTTATAAAGACAGAGGTTCCTGAGAATGCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCTTTTTCTTAGTTATAAAGACAGAGGTTCCTGAGAATGCCTTA  350

seq1  AGTCATGTGGAGTTTATTAAAAGGCTCCATGTGGGAGTAAGTAAAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTGGAGTTTATTAAAAGGCTCCATGTGGGAGTAAGTAAAACAGA  400

seq1  CATTGTGCTCATTCATTGTAGCTTCCTGCCAATTTAAGAAATGCATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTCATTCATTGTAGCTTCCTGCCAATTTAAGAAATGCATCAAA  450

seq1  CCAGGCCTGGAAGAAGAGCTAGACTCTTCCTTGGTAGAACTGAGTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGGAAGAAGAGCTAGACTCTTCCTTGGTAGAACTGAGTTTCCT  500

seq1  CAACTTCAGGAATGTGAAAAACCTATTCTTTCTTTCATCAATGTTCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCAGGAATGTGAAAAACCTATTCTTTCTTTCATCAATGTTCCACT  550

seq1  CATAATATTTTTATCCCTTATATAACTGTCCTGTTGACTAAATTTCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTTTTATCCCTTATATAACTGTCCTGTTGACTAAATTTCCATT  600

seq1  TGTCTCCTTCTCATTCGTAGCTTGTACTTCCTGCTTCTTTCTCCTGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTTCTCATTCGTAGCTTGTACTTCCTGCTTCTTTCTCCTGGTGT  650

seq1  TGTATTACTCAGGGACTCTGTCCTTTGCCTCTGCTGCCAGATGTTGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACTCAGGGACTCTGTCCTTTGCCTCTGCTGCCAGATGTTGGCAA  700

seq1  CTGTCTTCTCCTTGTACACCTTTCTTCTGCTCTGCTTACTGATCAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTCCTTGTACACCTTTCTTCTGCTCTGCTTACTGATCAACTCC  750

seq1  CACTGCA-CCTTCCTTAAAGCTTTCTTATTTATCCCCCTTTTCAGCATGG  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACCCTTCCTTAAAGCTTTCTTATTTATCCCCCTTTTCAGCATGG  800

seq1  GACAAAGCTTTGGGACTTCCC-TCCTGTTCCACTATTTCATATATAGACT  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACAAAGCTTTGGGACTTCCCTTCCTGTTCCACTATTTCATATATAGACT  850

seq1  GGCTGCTCTCTTCTTACCCAGGGCCACCATCATTCCAAGGAGCCAAAATC  898
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  GGCTGCTCTCTTCTTACCCAGGGTCACCATCATTTCAAGGAGCCAAAATC  900

seq1  ATAGAGAACAAACCATGACTACCAATGTGTTTGACTGTCGTCTCTCATAA  948
      ||||||| ||| ||||||||||| ||||||||||||||||||||||||||
seq2  ATAGAGACCAATCCATGACTACC-ATGTGTTTGACTGTCGTCTCTCATAA  949

seq1  AGGGTTATGGTTGGGTTCTAGAAGCCTGTAGGACATTGGAGAATAGGTCT  998
      ||||||||||||||||||| |||||||| ||||||| ||| |||||||||
seq2  AGGGTTATGGTTGGGTTCTTGAAGCCTGGAGGACATGGGATAATAGGTCT  999

seq1  GACCAAGGCA  1008
      ||||||||||
seq2  GACCAAGGCA  1009