BAC Information

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BAC

Clone NameB6Ng01-145M05
Chromosome1 (Build37)
Map Location 118,316,550 - 118,475,253
singlet/doubletdoublet
Overlap geneCntnap5a
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M05.bB6Ng01-145M05.g
ACCDH943080DH943081
length1,1191,107
definitionDH943080|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M05, 5' end.DH943081|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,474,117 - 118,475,253)(118,316,550 - 118,317,682)
sequence
gaattcattcattcatccaagctgccaaaatgcaggcgtgagacacctgg
cttttcatttctcaggtgtcttacatcaaaccaaacttgggagacagtac
atattgcaagacccagatgggaacatcaaactattgcaagcattatacaa
gctgagacagaatgaagagtggggtagggtgagactacagtcagcttata
aacaatgaaggaagggaaggtggtaaagaatgaactataagcaggcacgc
tctatatctacaaccagatggcctgctagatttggatctttagtcatata
gggttcaccctgctcattagacctaaccccatttacttagtaaaggaaaa
ctgaaaatgactgcctttctgttcatctgtctgccacatgtgacttcttt
ccacacataattttattggtttattttgtttgtgctttagaagtgacaac
tggatgcaatgaacaagatgcaggctgcctgcctgtgagtaaatgttcca
gctgttggttcagagcacagctgcctatggaatttgaggcagaatgaagc
cacagagctcctggtgcaggaagagggtctgccattagtcttaaacatgc
gtgaagaagcaaagcactgaacagagactgcctgtttctcgatgctgcat
gaccatgggcagggatcacttcaggtaactttctacagaaaagaaagagt
catagatatctttcccgctttcagaaatgaagtgaggttacctccaatga
ctgctgagtcacttcggactgcattttggagtggttcatggtcatctgtc
tttccaaaggaatctagaaaaagatagaaaaagtacagttcatcactcag
tcaaccacagggagagtatatgtaatgtacatctatgaagtgtaacagat
tgcttcagtgagagatgaactagcatttgaaagaacccaataaatggcat
ttaaaaatgatgacctgaatcaatctcagacttgaattaaagctgaatta
tgggctcatttgtatccagtgagagaatactggcatgaaattgtgcctct
ggagcaacagcaggaaacttgatcagtcctgtccttgctgccatgtttgg
taatatgatagtatatata
gaattcactaaagcatcatacaagttaagacataccgggaattttaatgg
atgtacagtcctccatatactgcttttatcattacttattttcattcttc
tacagtaagaatttgacttgtggttggctttttgctgctaacacatagtg
cagtagcaaaatatattgagttctgatttgtattgcttttagtgttttag
cacattactatattgaccagaactgcatcttagaattatgagaggatgaa
ttgtgactgattgagcaaaacagctgaggagacattggtcattaagcaga
ttccaaagagccaatgcccagtggaatgctctggccatgcggaacatgta
gagaatcaccactctttgagagaatagtataggtgtgagagggtcaacac
gaatggacaactggacatgatctgcaatcaccaaagagataagcatcaat
taagtcaactcaaatacaaggaccatcctgtgtcccagagttctaaattg
agtgaaaagggaagagggagctgagcatcagcattcacttctttgcatcc
agactgccagttgcctcaaacccaaggcattgtgatgaattgaaatgtga
gccaaaagaaacctttatcacagcaccaaggaggtaacttattcagtgac
atgaggagaggcagtcagttctcagcagagtctcacacagcctaatggag
agattccttgcagcctcttcttgctgaaaatttactggagcctttaatta
gttagggctcagaacagatcacaaagcctccttttcttcccgatgtcata
tatttttccttgtgtttccacaatccatggaaaagcacatggatgacttt
agacaattgcagtgactgtatttaaagagaagctggaaacaaacaaatgt
ctctcaacagagaatggatacagaaatgtgaacatttacgcatagatact
actcagctataaaaacatgacttatgaaattcgcagcaatgactgactga
aatatcatcttgagtgcggtacccagtcaaaaagaaccaccattgttatg
catcactgaataggtgattagctaaactcgaactcaatccgcaacatata
tagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118474117_118475253
seq2: B6Ng01-145M05.b_44_1162 (reverse)

seq1  --TATAT------ATATCACAAAACATGTGGCAGCAAGAGGACAAGGATT  42
        |||||      |||| || |||||  ||||||||  ||||| |||| |
seq2  TATATATACTATCATATTACCAAACA--TGGCAGCA--AGGAC-AGGACT  45

seq1  TGGGAATCAGGTTTTTCCTTGCTGTTGCTTCAGAGGCACAATCTCATTGC  92
           |||| ||||   | |||||||||| |||||||||||| ||| |||
seq2  ----GATCAAGTTT---CCTGCTGTTGCTCCAGAGGCACAATTTCA-TGC  87

seq1  CAGCTATTCTCTCACTGGGATTACAAATTGGAGCCCCATAATTCAGCTTT  142
      ||| ||||||||||||||   |||||||  ||| ||||||||||||| ||
seq2  CAG-TATTCTCTCACTGG--ATACAAAT--GAG-CCCATAATTCAGC-TT  130

seq1  TAATTCAAGTTCTGAGATTGAATTCAGGTCATCATTTTTTAAATGCCATT  192
      ||||||||| |||||||||| ||||||||||||| |||||||||||||||
seq2  TAATTCAAG-TCTGAGATTG-ATTCAGGTCATCA-TTTTTAAATGCCATT  177

seq1  TATTTGGGTTTCTTTCAAATGCTAGTTCATCTCTCACTGAAGCAATCTTG  242
      ||||  || |||||||||||||||||||||||||||||||||||||| ||
seq2  TATT--GGGTTCTTTCAAATGCTAGTTCATCTCTCACTGAAGCAATC-TG  224

seq1  TTACACTTCATAGATGTACATTACATATACTCTCCCTGTGGTTGACTGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTCATAGATGTACATTACATATACTCTCCCTGTGGTTGACTGAG  274

seq1  TGATGAACTGTACTTTTTCTATCTTTTTCTAGATTCCTTTGGAAAGACAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACTGTACTTTTTCTATCTTTTTCTAGATTCCTTTGGAAAGACAG  324

seq1  ATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGCAGTCATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATGAACCACTCCAAAATGCAGTCCGAAGTGACTCAGCAGTCATT  374

seq1  GGAGGTAACCTCACTTCATTTCTGAAAGCGGGAAAGATATCTATGACTCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAACCTCACTTCATTTCTGAAAGCGGGAAAGATATCTATGACTCT  424

seq1  TTCTTTTCTGTAGAAAGTTACCTGAAGTGATCCCTGCCCATGGTCATGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTGTAGAAAGTTACCTGAAGTGATCCCTGCCCATGGTCATGCA  474

seq1  GCATCGAGAAACAGGCAGTCTCTGTTCAGTGCTTTGCTTCTTCACGCATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGAAACAGGCAGTCTCTGTTCAGTGCTTTGCTTCTTCACGCATG  524

seq1  TTTAAGACTAATGGCAGACCCTCTTCCTGCACCAGGAGCTCTGTGGCTTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACTAATGGCAGACCCTCTTCCTGCACCAGGAGCTCTGTGGCTTC  574

seq1  ATTCTGCCTCAAATTCCATAGGCAGCTGTGCTCTGAACCAACAGCTGGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTCAAATTCCATAGGCAGCTGTGCTCTGAACCAACAGCTGGAA  624

seq1  CATTTACTCACAGGCAGGCAGCCTGCATCTTGTTCATTGCATCCAGTTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTCACAGGCAGGCAGCCTGCATCTTGTTCATTGCATCCAGTTGT  674

seq1  CACTTCTAAAGCACAAACAAAATAAACCAATAAAATTATGTGTGGAAAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTAAAGCACAAACAAAATAAACCAATAAAATTATGTGTGGAAAGA  724

seq1  AGTCACATGTGGCAGACAGATGAACAGAAAGGCAGTCATTTTCAGTTTTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGTGGCAGACAGATGAACAGAAAGGCAGTCATTTTCAGTTTTC  774

seq1  CTTTACTAAGTAAATGGGGTTAGGTCTAATGAGCAGGGTGAACCCTATAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTAAGTAAATGGGGTTAGGTCTAATGAGCAGGGTGAACCCTATAT  824

seq1  GACTAAAGATCCAAATCTAGCAGGCCATCTGGTTGTAGATATAGAGCGTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGATCCAAATCTAGCAGGCCATCTGGTTGTAGATATAGAGCGTG  874

seq1  CCTGCTTATAGTTCATTCTTTACCACCTTCCCTTCCTTCATTGTTTATAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTATAGTTCATTCTTTACCACCTTCCCTTCCTTCATTGTTTATAA  924

seq1  GCTGACTGTAGTCTCACCCTACCCCACTCTTCATTCTGTCTCAGCTTGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTAGTCTCACCCTACCCCACTCTTCATTCTGTCTCAGCTTGTA  974

seq1  TAATGCTTGCAATAGTTTGATGTTCCCATCTGGGTCTTGCAATATGTACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTGCAATAGTTTGATGTTCCCATCTGGGTCTTGCAATATGTACT  1024

seq1  GTCTCCCAAGTTTGGTTTGATGTAAGACACCTGAGAAATGAAAAGCCAGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCAAGTTTGGTTTGATGTAAGACACCTGAGAAATGAAAAGCCAGG  1074

seq1  TGTCTCACGCCTGCATTTTGGCAGCTTGGATGAATGAATGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACGCCTGCATTTTGGCAGCTTGGATGAATGAATGAATTC  1119

seq1: chr1_118316550_118317682
seq2: B6Ng01-145M05.g_70_1176

seq1  GAATTCACTAAAGCATCATACAAGTTAAGACATACCGGGAATTTTAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAGCATCATACAAGTTAAGACATACCGGGAATTTTAATGG  50

seq1  ATGTACAGTCCTCCATATACTGCTTTTATCATTACTTATTTTCATTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGTCCTCCATATACTGCTTTTATCATTACTTATTTTCATTCTTC  100

seq1  TACAGTAAGAATTTGACTTGTGGTTGGCTTTTTGCTGCTAACACATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAGAATTTGACTTGTGGTTGGCTTTTTGCTGCTAACACATAGTG  150

seq1  CAGTAGCAAAATATATTGAGTTCTGATTTGTATTGCTTTTAGTGTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCAAAATATATTGAGTTCTGATTTGTATTGCTTTTAGTGTTTTAG  200

seq1  CACATTACTATATTGACCAGAACTGCATCTTAGAATTATGAGAGGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACTATATTGACCAGAACTGCATCTTAGAATTATGAGAGGATGAA  250

seq1  TTGTGACTGATTGAGCAAAACAGCTGAGGAGACATTGGTCATTAAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACTGATTGAGCAAAACAGCTGAGGAGACATTGGTCATTAAGCAGA  300

seq1  TTCCAAAGAGCCAATGCCCAGTGGAATGCTCTGGCCATGCGGAACATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGAGCCAATGCCCAGTGGAATGCTCTGGCCATGCGGAACATGTA  350

seq1  GAGAATCACCACTCTTTGAGAGAATAGTATAGGTGTGAGAGGGTCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCACCACTCTTTGAGAGAATAGTATAGGTGTGAGAGGGTCAACAC  400

seq1  GAATGGACAACTGGACATGATCTGCAATCACCAAAGAGATAAGCATCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGACAACTGGACATGATCTGCAATCACCAAAGAGATAAGCATCAAT  450

seq1  TAAGTCAACTCAAATACAAGGACCATCCTGTGTCCCAGAGTTCTAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAACTCAAATACAAGGACCATCCTGTGTCCCAGAGTTCTAAATTG  500

seq1  AGTGAAAAGGGAAGAGGGAGCTGAGCATCAGCATTCACTTCTTTGCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGGGAAGAGGGAGCTGAGCATCAGCATTCACTTCTTTGCATCC  550

seq1  AGACTGCCAGTTGCCTCAAACCCAAGGCATTGTGATGAATTGAAATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCAGTTGCCTCAAACCCAAGGCATTGTGATGAATTGAAATGTGA  600

seq1  GCCAAAAGAAACCTTTATCACAGCACCAAGGAGGTAACTTATTCAGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGAAACCTTTATCACAGCACCAAGGAGGTAACTTATTCAGTGAC  650

seq1  ATGAGGAGAGGCAGTCAGTTCTCAGCAGAGTCTCACACAGCCTAATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGAGGCAGTCAGTTCTCAGCAGAGTCTCACACAGCCTAATGGAG  700

seq1  AGATTCCTTGCAGCCTCTTCTTGCTGAAAATTTACTGGAGCCTTTAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTTGCAGCCTCTTCTTGCTGAAAATTTACTGGAGCCTTTAATTA  750

seq1  GTTAGGGCTCAGAACAGATCACAAAGCCTCCTTTTCTTCCCGATGTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGCTCAGAACAGATCACAAAGCCTCCTTTTCTTCCCGATGTCATA  800

seq1  TATTTTTCCTTGTGTTTCCACAATCCATGGAAAAGCACATGGATGACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTTGTGTTTCCACAATCCATGGAAAAGCACATGGATGACTTT  850

seq1  AGACAATTGCAGTGACTGTATTTAAAGAGAAGCTGGAAACAAACAAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTGCAGTGACTGTATTTAAAGAGAAGCTGGAAACAAACAAATGT  900

seq1  CCCTCAACAGAGGAATGGATACAGAAAATGTGGAACATTTACGCAATAGA  950
      | ||||||||| |||||||||||| |||||| |||||||||||| |||| 
seq2  CTCTCAACAGA-GAATGGATACAG-AAATGT-GAACATTTACGC-ATAG-  945

seq1  ATACTACTCAGCTATTAAAAACAATGACTTAATGAAATTCGCAGGCAAAT  1000
      |||||||||||||| ||||||| ||||||| |||||||||||| ||||  
seq2  ATACTACTCAGCTA-TAAAAAC-ATGACTT-ATGAAATTCGCA-GCAA--  989

seq1  GGACTTGACTTGAAAATATCATCCTGAGTGCGGTAACCCAGTCACAAAAG  1050
       ||| |||||   |||||||||| |||||||||| ||||||||| |||||
seq2  TGAC-TGACT--GAAATATCATCTTGAGTGCGGT-ACCCAGTCA-AAAAG  1034

seq1  AA-CACACATGTTATGCATTCACTG-ATAAGTGGATATTAGCCTAAAAAC  1098
      || |||   ||||||||| |||||| ||| |||   ||||||    ||||
seq2  AACCACCATTGTTATGCA-TCACTGAATAGGTG---ATTAGC---TAAAC  1077

seq1  TCGGAATACTCAATTCGCAGACCATATATAGCTCA  1133
      |||    ||||||| |||  | |||||||||||||
seq2  TCG---AACTCAATCCGC--AACATATATAGCTCA  1107