BAC Information

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BAC

Clone NameB6Ng01-146F11
Chromosome1 (Build37)
Map Location 138,654,941 - 138,772,251
singlet/doubletdoublet
Overlap geneLOC667686, EG623818, Nr5a2
Upstream genePhlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281
Downstream geneRnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146F11.bB6Ng01-146F11.g
ACCDH943510DH943511
length5891,139
definitionDH943510|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F11, 5' end.DH943511|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,654,941 - 138,655,535)(138,771,097 - 138,772,251)
sequence
tgcttagtaaattaaaccaatctacagagagagttgcgaaaacccttttg
taaagctgctggtcagaagtgtcggtgacagtgtgctagctgtgattgat
gtgtgtgttagcttcttcttctttttttttttttttcgagacagggtttc
tctgtgtagccctggctgtcctggaactcattttgtagaccaggctgacc
tcgaactcagaaatccacctccctctgcctcccaagtgctgggattaaag
gcgtgcgccaccaccgcccgactgtgtgttagcttcttatcacggggtct
aaatacttgaggtgacttgtaagggaagaagattgactttggctcctggt
ttcagctcatggttgtttggctgattgctttgaacctgtggccaggctgg
atgccgtggtaccaagcaaagctgcgcacactgcggcctcaataaataaa
agggaaggggagggatcctcatatatatcttcccgagcacttgctccatg
acctcatgatcttccagaagctcctacctcccgagggttcattacctctc
gacagtgccatcagctggcagccaggcgtcactacatgg
gaattccaggatagccagggctcacttaacacccaaccccacccccaagt
aaagccgatgttttacttacacatgtacacaggcacacacacctctcaga
tgcagatgaatagagccctttgggaaaagactacggtgactgaagctgtg
gatcctgacttcagtgctcgtgcaacgtgctgttgactttgtattagtaa
atacagtcccacgtctcgactgtctgaacggcgtgtatgatttatccttt
ggttagtttccagtagtcttcagttcctgatgtgtatgggttttgttcct
tgttggagtttcagccactgatgcttcttccactttgataaagacctttt
tgcttggctcactttccctgtctcagtgcaatccgtatccttgatagcag
ggcccactgaagggcactgagagctagctttctgtaggcagtgaatcacc
gtgctggcctcttgagcccaagccagtcagggattttgtgcaagagtcaa
agaatcctgtacaaccttcctagacagaaatgtgtgtgtcactgctgagg
gatgtacatgccaatttaatctaataattattaactgttaatctcctatc
tcaatcagacacagcagggacttagcgaagaggaaacctatgaccattaa
gtgtggtttaaaaagtttcccatcatttcacacacaagaaaccatggccc
atcaatcagaactcctttctacttgtctgggggtacttgtggttaagcca
ggatgcctctttagcaccagtagggaaacttatttatgaatacatccaag
gctggcaatagctcttatgtgagaagaaagacttcaccatctacagggtc
tcaatcctgtctgctcagcggttggtgccatagacagggctcctcttggg
caatgtcaggtatacactggtggcctcaactgcaatgccacgtgctaatt
catcccagtgtcatcaagactagagggtttctcctgcagagagaagagcc
cgccgctgcttgtgactgtcagtcatgggttgccttctgggagggaagca
tttttcttgtctggctgtgcttagtaccagtctcatggcaaccttttccg
tgttgcagaacccaggaaagatgtgtaggttccagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138654941_138655535
seq2: B6Ng01-146F11.b_48_642

seq1  GAATTCTGCTTAGTAAATTAAACCAATCTACAGAGAGAGTTGCGAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTAGTAAATTAAACCAATCTACAGAGAGAGTTGCGAAAACC  50

seq1  CTTTTGTAAAGCTGCTGGTCAGAAGTGTCGGTGACAGTGTGCTAGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAAAGCTGCTGGTCAGAAGTGTCGGTGACAGTGTGCTAGCTGTG  100

seq1  ATTGATGTGTGTGTTAGCTTCTTCTTCTTTTTTTTTTTTTTTCGAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTGTGTGTTAGCTTCTTCTTCTTTTTTTTTTTTTTTCGAGACAG  150

seq1  GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCATTTTGTAGACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCATTTTGTAGACCAGG  200

seq1  CTGACCTCGAACTCAGAAATCCACCTCCCTCTGCCTCCCAAGTGCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCGAACTCAGAAATCCACCTCCCTCTGCCTCCCAAGTGCTGGGA  250

seq1  TTAAAGGCGTGCGCCACCACCGCCCGACTGTGTGTTAGCTTCTTATCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCGCCACCACCGCCCGACTGTGTGTTAGCTTCTTATCACG  300

seq1  GGGTCTAAATACTTGAGGTGACTTGTAAGGGAAGAAGATTGACTTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAAATACTTGAGGTGACTTGTAAGGGAAGAAGATTGACTTTGGCT  350

seq1  CCTGGTTTCAGCTCATGGTTGTTTGGCTGATTGCTTTGAACCTGTGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCAGCTCATGGTTGTTTGGCTGATTGCTTTGAACCTGTGGCCA  400

seq1  GGCTGGATGCCGTGGTACCAAGCAAAGCTGCGCACACTGCGGCCTCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATGCCGTGGTACCAAGCAAAGCTGCGCACACTGCGGCCTCAATA  450

seq1  AATAAAAGGGAAGGGGAGGGATCCTCATATATATCTTCCCGAGCACTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGGAAGGGGAGGGATCCTCATATATATCTTCCCGAGCACTTGC  500

seq1  TCCATGACCTCATGATCTTCCAGAAGCTCCTACCTCCCGAGGGTTCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACCTCATGATCTTCCAGAAGCTCCTACCTCCCGAGGGTTCATTA  550

seq1  CCTCTCGACAGCGCCATCAGCTGGCAGCCAGGCGTCACTACATGG  595
      ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTCTCGACAGTGCCATCAGCTGGCAGCCAGGCGTCACTACATGG  595

seq1: chr1_138771097_138772251
seq2: B6Ng01-146F11.g_67_1205 (reverse)

seq1  CCCACTGTGGACCCTACACATCTCTCCTGGGTCCTTGCAACACGGGAAGA  50
      |||||  |||| ||||||||||| |||||||| | |||||||||| ||  
seq2  CCCAC--TGGAACCTACACATCTTTCCTGGGTTC-TGCAACACGGAAAAG  47

seq1  GCTGGCATGAG-CTGGTACTAAGCACAGCCCAGACCAGAAAAATGCTTCC  99
      | || |||||| |||||||||||||||| |||||| |||||||||||| |
seq2  GTTGCCATGAGACTGGTACTAAGCACAG-CCAGACAAGAAAAATGCTT-C  95

seq1  CCTCCCAAGAAGGCAACCCATGACTGGCCAGTCACCAGGCAGCCGGCCGG  149
      |||||| |||||||||||||||||| | |||||| || |||||  | |||
seq2  CCTCCC-AGAAGGCAACCCATGACT-GACAGTCA-CAAGCAGC--GGCGG  140

seq1  GCTCTTTCCTCTCTGCAGGAGAAAACCCTCCTATGTCTTGATGACACTTG  199
      ||||||  ||||||||||||| ||||||| ||| ||||||||||||| ||
seq2  GCTCTT--CTCTCTGCAGGAG-AAACCCT-CTA-GTCTTGATGACAC-TG  184

seq1  GGATTGAATTAGCACGTGGCATTGCAGTTGAGGCCACCAGTGTATACCTG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGA-TGAATTAGCACGTGGCATTGCAGTTGAGGCCACCAGTGTATACCTG  233

seq1  ACATTGCCCAAGAGGAGCCCTGTCTATGGCACCAACCGCTGAGCAGACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCCAAGAGGAGCCCTGTCTATGGCACCAACCGCTGAGCAGACAG  283

seq1  GATTGAGACCCTGTAGATGGTGAAGTCTTTCTTCTCACATAAGAGCTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGACCCTGTAGATGGTGAAGTCTTTCTTCTCACATAAGAGCTATT  333

seq1  GCCAGCCTTGGATGTATTCATAAATAAGTTTCCCTACTGGTGCTAAAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTTGGATGTATTCATAAATAAGTTTCCCTACTGGTGCTAAAGAG  383

seq1  GCATCCTGGCTTAACCACAAGTACCCCCAGACAAGTAGAAAGGAGTTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGGCTTAACCACAAGTACCCCCAGACAAGTAGAAAGGAGTTCTG  433

seq1  ATTGATGGGCCATGGTTTCTTGTGTGTGAAATGATGGGAAACTTTTTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGGGCCATGGTTTCTTGTGTGTGAAATGATGGGAAACTTTTTAAA  483

seq1  CCACACTTAATGGTCATAGGTTTCCTCTTCGCTAAGTCCCTGCTGTGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTAATGGTCATAGGTTTCCTCTTCGCTAAGTCCCTGCTGTGTCT  533

seq1  GATTGAGATAGGAGATTAACAGTTAATAATTATTAGATTAAATTGGCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGATAGGAGATTAACAGTTAATAATTATTAGATTAAATTGGCATG  583

seq1  TACATCCCTCAGCAGTGACACACACATTTCTGTCTAGGAAGGTTGTACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCTCAGCAGTGACACACACATTTCTGTCTAGGAAGGTTGTACAG  633

seq1  GATTCTTTGACTCTTGCACAAAATCCCTGACTGGCTTGGGCTCAAGAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTGACTCTTGCACAAAATCCCTGACTGGCTTGGGCTCAAGAGGC  683

seq1  CAGCACGGTGATTCACTGCCTACAGAAAGCTAGCTCTCAGTGCCCTTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGGTGATTCACTGCCTACAGAAAGCTAGCTCTCAGTGCCCTTCAG  733

seq1  TGGGCCCTGCTATCAAGGATACGGATTGCACTGAGACAGGGAAAGTGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCTGCTATCAAGGATACGGATTGCACTGAGACAGGGAAAGTGAGC  783

seq1  CAAGCAAAAAGGTCTTTATCAAAGTGGAAGAAGCATCAGTGGCTGAAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAAAGGTCTTTATCAAAGTGGAAGAAGCATCAGTGGCTGAAACT  833

seq1  CCAACAAGGAACAAAACCCATACACATCAGGAACTGAAGACTACTGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGGAACAAAACCCATACACATCAGGAACTGAAGACTACTGGAAA  883

seq1  CTAACCAAAGGATAAATCATACACGCCGTTCAGACAGTCGAGACGTGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAAGGATAAATCATACACGCCGTTCAGACAGTCGAGACGTGGGA  933

seq1  CTGTATTTACTAATACAAAGTCAACAGCACGTTGCACGAGCACTGAAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTACTAATACAAAGTCAACAGCACGTTGCACGAGCACTGAAGTC  983

seq1  AGGATCCACAGCTTCAGTCACCGTAGTCTTTTCCCAAAGGGCTCTATTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCACAGCTTCAGTCACCGTAGTCTTTTCCCAAAGGGCTCTATTCA  1033

seq1  TCTGCATCTGAGAGGTGTGTGTGCCTGTGTACATGTGTAAGTAAAACATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTGAGAGGTGTGTGTGCCTGTGTACATGTGTAAGTAAAACATC  1083

seq1  GGCTTTACTTGGGGGTGGGGTTGGGTGTTAAGTGAGCCCTGGCTATCCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACTTGGGGGTGGGGTTGGGTGTTAAGTGAGCCCTGGCTATCCTG  1133

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1139