BAC Information

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BAC

Clone NameB6Ng01-146P04
Chromosome1 (Build37)
Map Location 158,813,764 - 158,935,127
singlet/doubletdoublet
Overlap geneRalgps2, 4930439D14Rik
Upstream geneCep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Angptl1
Downstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146P04.bB6Ng01-146P04.g
ACCDH943959DH943960
length8371,199
definitionDH943959|Mus musculus domesticus DNA, BAC clone: B6Ng01-146P04, 5' end.DH943960|Mus musculus domesticus DNA, BAC clone: B6Ng01-146P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,934,295 - 158,935,127)(158,813,764 - 158,814,992)
sequence
gaattcatctcttttaaactttttcgcttatagcctctgggaggagcttt
ggatgaaacgcttgcttggtgagtaagagtcattgttgctaacagttgac
attggtgaagtaacagctgtgtgttccagggtaacttactgcttcccata
gcctaaaccgagccctgggaagtaggactgatttcgactgaacagctgag
aaaactgaaatacaagaaattgacaagaacacggcagtaccgccaaatct
gctgatctcatccacggatcatgatgtccaaggttatccattaagttctg
ctcgggtacactcaaagctttatttccactcaaaataacctctcccttct
cggaattttcctggttcttcaactgcctctgagcctcccacgtgaacccc
attagaagccccccgtagaggcccaatgatcattttcgatttggaggccc
acatagtctgtcacaacctctcagctctgctgcccactgtagcataagac
tggccatcaacaataaacaaattaatgagcatggctgcatttcagttaaa
ttgtacttaggcgtgttgagattttatgggggtgggggtctggggagata
gcttagttagtaaagtgcttcccttgcaagcaagaggacctgcgtttggt
ccccagaataaaactggatgtgatagcgcctgtttgtagtcccagcaatt
ggaaaggtggacacagggtggatcccaggggctcagtggttgacctgata
aggtcaagggcagcaagacagcttatctcaaaaaccaatctggggatctc
tgactcagtgggttaagagcactgaattgctcttcca
gaattccagaaaatccagggctacacagagaaaccctgtcttgaaaaaca
aaaagacattaatcttttaaaaaatatatagtaatattttcagcacggta
tatggtccacctgtaatcctagtacttgtgaggctgaggcagaaccatga
ctttaaagctagcttgggctataaaaaaagactgtgtgtgtgtgtacgcg
cacacaccccttcatagaggctagtatatcaggcttataactccagctac
ttgactggccaagaaaggaagtccccaacttgaaagcaactttgggtgac
ttagcaagataccttaaacgaggccgtagtttcaaaataagaaataaaag
aaagaaaaggggaagagataacctagaaagattgagtatggtatcattct
actcagagatacaaatactgatcatgccaaaaatcatactttgcttttgt
caaagtaacagaacctaatatggtggctgttgtaacagaaagtagcatgt
ttatcatgagatttttctatactcaagatttatggctaaaaaataatgga
gtcaaaattaataaaagaactttaaaggtcatgatttagattttcagatt
tacaagaagtataatctgtacacaattaaattctaattatcaggtaagta
ttacatgtgatattatcaacaaggtatgaaaatgattctctgaagagcaa
aataagcactgccctcaacattccctcaaaagctcagtgcaatgttttaa
aagtcttaaatgttggtttcaaagaacaaagtgcaagacaatttaagaat
tcttatctattatatttgtctaagacttacaaaagaaacaaataatattt
ctacttcgcacaaaagtctatgcttcattaaactaggcagagttactcac
cgcccacgtcttagtcaaccggaaaatcggcgcactctgtaagccagaaa
cacagccataagtgcgtgaaggttgttaagttcatatagttctgaagatt
taagaaaaagggggaggaggatgtttttttaagaaatgactgcaggaaat
aagatagcacatttaggcagtggaagaataactatttatattgtactgtc
actttgggaaactgtcttctaggatccagtattatttttgggctaaatta
gtcagtttcactggcacttcccagcgtgggaataaccacctctaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_158934295_158935127
seq2: B6Ng01-146P04.b_43_879 (reverse)

seq1  TGGAAGAGC-AGTCAGTGCTCTTAA-CCACTGAGTCAGAGATCCCCAGAT  48
      ||||||||| | ||||||||||||| ||||||||||||||||||||||||
seq2  TGGAAGAGCAATTCAGTGCTCTTAACCCACTGAGTCAGAGATCCCCAGAT  50

seq1  TGGTTTTTGAGATAAGCTGTCTTGCTGCCCTGGACCTTATCAGGTCAACC  98
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTTTTTGAGATAAGCTGTCTTGCTGCCCTTGACCTTATCAGGTCAACC  100

seq1  ACTGAGCCCCTGGGATCCA-CCTGTGTCCACC-TTCCAATTGCTGGGACT  146
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  ACTGAGCCCCTGGGATCCACCCTGTGTCCACCTTTCCAATTGCTGGGACT  150

seq1  ACAAACAGGCGCTATCACATCCAGTTTTATTCTGGGGACCAAACGCAGGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGGCGCTATCACATCCAGTTTTATTCTGGGGACCAAACGCAGGT  200

seq1  CCTCTTGCTTGCAAGGGAAGCACTTTACTAACTAAGCTATCTCCCCAGAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCTTGCAAGGGAAGCACTTTACTAACTAAGCTATCTCCCCAGAC  250

seq1  CCCCACCCCCATAAAATCTCAACACGCCTAAGTACAATTTAACTGAAATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCATAAAATCTCAACACGCCTAAGTACAATTTAACTGAAATG  300

seq1  CAGCCATGCTCATTAATTTGTTTATTGTTGATGGCCAGTCTTATGCTACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGCTCATTAATTTGTTTATTGTTGATGGCCAGTCTTATGCTACA  350

seq1  GTGGGCAGCAGAGCTGAGAGGTTGTGACAGACTATGTGGGCCTCCAAATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGCAGAGCTGAGAGGTTGTGACAGACTATGTGGGCCTCCAAATC  400

seq1  GAAAATGATCATTGGGCCTCTACGGGGGGCTTCTAATGGGGTTCACGTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATCATTGGGCCTCTACGGGGGGCTTCTAATGGGGTTCACGTGG  450

seq1  GAGGCTCAGAGGCAGTTGAAGAACCAGGAAAATTCCGAGAAGGGAGAGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGAGGCAGTTGAAGAACCAGGAAAATTCCGAGAAGGGAGAGGT  500

seq1  TATTTTGAGTGGAAATAAAGCTTTGAGTGTACCCGAGCAGAACTTAATGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAGTGGAAATAAAGCTTTGAGTGTACCCGAGCAGAACTTAATGG  550

seq1  ATAACCTTGGACATCATGATCCGTGGATGAGATCAGCAGATTTGGCGGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTGGACATCATGATCCGTGGATGAGATCAGCAGATTTGGCGGTA  600

seq1  CTGCCGTGTTCTTGTCAATTTCTTGTATTTCAGTTTTCTCAGCTGTTCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGTGTTCTTGTCAATTTCTTGTATTTCAGTTTTCTCAGCTGTTCAG  650

seq1  TCGAAATCAGTCCTACTTCCCAGGGCTCGGTTTAGGCTATGGGAAGCAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAATCAGTCCTACTTCCCAGGGCTCGGTTTAGGCTATGGGAAGCAGT  700

seq1  AAGTTACCCTGGAACACACAGCTGTTACTTCACCAATGTCAACTGTTAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCCTGGAACACACAGCTGTTACTTCACCAATGTCAACTGTTAGC  750

seq1  AACAATGACTCTTACTCACCAAGCAAGCGTTTCATCCAAAGCTCCTCCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGACTCTTACTCACCAAGCAAGCGTTTCATCCAAAGCTCCTCCCA  800

seq1  GAGGCTATAAGCGAAAAAGTTTAAAAGAGATGAATTC  833
      |||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATAAGCGAAAAAGTTTAAAAGAGATGAATTC  837

seq1: chr1_158813764_158814992
seq2: B6Ng01-146P04.g_69_1267

seq1  GAATTCCAGAAAATCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAATCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACA  50

seq1  AAAAGACATTAATCTTTTAAAAAATATATAGTAATATTTTCAGCACGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACATTAATCTTTTAAAAAATATATAGTAATATTTTCAGCACGGTA  100

seq1  TATGGTCCACCTGTAATCCTAGTACTTGTGAGGCTGAGGCAGAACCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCCACCTGTAATCCTAGTACTTGTGAGGCTGAGGCAGAACCATGA  150

seq1  CTTTAAAGCTAGCTTGGGCTATAAAAAAAGACTGTGTGTGTGTGTACGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGCTAGCTTGGGCTATAAAAAAAGACTGTGTGTGTGTGTACGCG  200

seq1  CACACACCCCTTCATAGAGGCTAGTATATCAGGCTTATAACTCCAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCCTTCATAGAGGCTAGTATATCAGGCTTATAACTCCAGCTAC  250

seq1  TTGACTGGCCAAGAAAGGAAGTCCCCAACTTGAAAGCAACTTTGGGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGGCCAAGAAAGGAAGTCCCCAACTTGAAAGCAACTTTGGGTGAC  300

seq1  TTAGCAAGATACCTTAAACGAGGCCGTAGTTTCAAAATAAGAAATAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGATACCTTAAACGAGGCCGTAGTTTCAAAATAAGAAATAAAAG  350

seq1  AAAGAAAAGGGGAAGAGATAACCTAGAAAGATTGAGTATGGTATCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGGGGAAGAGATAACCTAGAAAGATTGAGTATGGTATCATTCT  400

seq1  ACTCAGAGATACAAATACTGATCATGCCAAAAATCATACTTTGCTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATACAAATACTGATCATGCCAAAAATCATACTTTGCTTTTGT  450

seq1  CAAAGTAACAGAACCTAATATGGTGGCTGTTGTAACAGAAAGTAGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACAGAACCTAATATGGTGGCTGTTGTAACAGAAAGTAGCATGT  500

seq1  TTATCATGAGATTTTTCTATACTCAAGATTTATGGCTAAAAAATAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGAGATTTTTCTATACTCAAGATTTATGGCTAAAAAATAATGGA  550

seq1  GTCAAAATTAATAAAAGAACTTTAAAGGTCATGATTTAGATTTTCAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTAATAAAAGAACTTTAAAGGTCATGATTTAGATTTTCAGATT  600

seq1  TACAAGAAGTATAATCTGTACACAATTAAATTCTAATTATCAGGTAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAGTATAATCTGTACACAATTAAATTCTAATTATCAGGTAAGTA  650

seq1  TTACATGTGATATTATCAACAAGGTATGAAAATGATTCTCTGAAGAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTGATATTATCAACAAGGTATGAAAATGATTCTCTGAAGAGCAA  700

seq1  AATAAGCACTGCCCTCAACATTCCCTCAAAAGCTCAGTGCAATGTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCACTGCCCTCAACATTCCCTCAAAAGCTCAGTGCAATGTTTTAA  750

seq1  AAGTCTTAAATGTTGGTTTCAAAGAACAAAGTGCAAGACAATTTAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTAAATGTTGGTTTCAAAGAACAAAGTGCAAGACAATTTAAGAAT  800

seq1  TCTTATCTATTATATTTGTCTAAGACTTACAAAAGAAACAAATAATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTATTATATTTGTCTAAGACTTACAAAAGAAACAAATAATATTT  850

seq1  CTACTTCGCACAAAAGTCTATGCTTCATTAAACTAGGCAGAGTTACTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCGCACAAAAGTCTATGCTTCATTAAACTAGGCAGAGTTACTCAC  900

seq1  CGCCCACGTCTTAGTCAACCGGAAAATCGGCGCACTCTGTAAGCCAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACGTCTTAGTCAACCGGAAAATCGGCGCACTCTGTAAGCCAGAAA  950

seq1  CCACAGCCATAAGTGCGTGAAGGTTGTTAAGTTCATATAGTTTCTGAAGA  1000
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -CACAGCCATAAGTGCGTGAAGGTTGTTAAGTTCATATAG-TTCTGAAGA  998

seq1  TTTAAGAAAAAGGGGGAAGAGGATTGTTTTTTTAAGAAAATGACTGCAGG  1050
      ||||||||||||||||| ||||| |||||||||||| ||||||||||| |
seq2  TTTAAGAAAAAGGGGGAGGAGGA-TGTTTTTTTAAG-AAATGACTGCA-G  1045

seq1  GAAATACAGATTAGCACAATTTAGGCAGTGGATAGAATAACTATTTATTA  1100
      |||||| ||| |||||| |||||||||||||| |||||||||||||| ||
seq2  GAAATA-AGA-TAGCAC-ATTTAGGCAGTGGA-AGAATAACTATTTA-TA  1090

seq1  TTGTTACTGTCACTTTTGGAAACTGTCTTCTAGGATACCCAGTAAATTAT  1150
      ||| |||||||||||| |||||||||||||||||||  |||||  |||||
seq2  TTG-TACTGTCACTTTGGGAAACTGTCTTCTAGGAT--CCAGT--ATTAT  1135

seq1  TTTTGGCCTATAATATAATGTTCATGTTCTACCCTGGCACTTTCACCCAA  1200
      |||||| ||| | ||      |||  ||   | |||||||||    || |
seq2  TTTTGGGCTAAATTA-----GTCAGTTT---CACTGGCACTT----CCCA  1173

seq1  GCTGTGGGAATAAACCCAACTCTAAATGG  1229
      || ||||||||||  ||| ||||||||||
seq2  GC-GTGGGAATAA--CCACCTCTAAATGG  1199