BAC Information

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BAC

Clone NameB6Ng01-147G16
Chromosome1 (Build37)
Map Location 10,097,201 - 10,203,995
singlet/doubletdoublet
Overlap geneCspp1, Arfgef1
Upstream geneSntg1, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5
Downstream geneCpa6, LOC433271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147G16.bB6Ng01-147G16.g
ACCDH944307DH944308
length1,091486
definitionDH944307|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G16, 5' end.DH944308|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,097,201 - 10,098,292)(10,203,504 - 10,203,995)
sequence
gaattcagtcaactaaacattaatgaatttaaatacaaagggagagcaga
gctgaactgctaaatgccggtcctgtaagagatgtaagttgataaatgtc
gtcctacgtgagatgacccaagcagagattagatgttgtaagttgatagt
aataagactgagtcagcagctgggtgtggggatgcatgtcccttagacgg
aggcaggaagattgctgcagattaaggctagcctcgtctacatagtgatt
tcagagcagtcatggacacataacatactaagaccctgtttcagcaaact
aaaccaaccaaccaatcaaacagcaaaagcaataaatcaataatttaaga
atcatataaaaatttatgtgagatttaaattgtcatttttttttctttct
gcattcaaagagatgtctagggaatgattgtttttcaaatagcttttctg
aaacaatatcttccctttgaaactatataatgctatttataaggagcata
cactacagcaaactaatgctacatgtgtatccctttaaaaagtactctgt
atgtgcttcagatagaacccaaggctttgtgcacgccaggaaagcactaa
tttcagcaggtttttattttattttattttattttttattttttgggttt
tttgagtcagggtttctctgtgtagccctggctgtcctggaactcactct
gtagaccaggctggcctcgaactcagaaatccacctgcctctgcctccca
agtgctgggattaaaggcatgcgccaccacgcccggctaatttcagcagt
tttaagagtcaatcctattattactattattagtttttttttcctcttat
ttttttttcctccttcaattgtgggaattgaatccaggccttccaatgct
aagccctgccactgcactgtatttccacccctcaggaatattcctaagta
gaggatattcatgtacatttttctatcatgaccaatactgtaacagcctg
tgctgtgaggcatgttcagcttgccacattccggtgtgtgtctaacactg
ctttggacaggacttcagccccctactttctgacatgcttt
tttgggtcttgaggagtttttctgaacctacctgctttttatacatcttt
catcttttaagtttcaagatgattcataaagttgtgaccttaccaacgtt
tactgtattgttagagcctacgttgtccttctcaggccttgtatcaatca
ccaggtgtactgtctttcacaactctcttgtacccatccatctagtgaac
ctgctcaaacaaagtgaacaaataaaatccaagcttgtgttgtaatgaat
ctggatggttaaattcgtttagagaaaaacaagttgtgttctagttgtta
atgttacaactatggtagtatatatatttatttatagtatttatagtatt
tatatattgatatgatattgtatgaaacatacctgtctacactcagttgt
gatagagtgtaaacgttctgcattttaattatcacaagtacaacttctaa
tgaaacttagctaaagcatgttctggatatgggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_10097201_10098292
seq2: B6Ng01-147G16.b_48_1138

seq1  GAATTCAGTCAACTAAACATTAATGAATTTAAATACAAAGGGAGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAACTAAACATTAATGAATTTAAATACAAAGGGAGAGCAGA  50

seq1  GCTGAACTGCTAAATGCCGGTCCTGTAAGAGATGTAAGTTGATAAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTGCTAAATGCCGGTCCTGTAAGAGATGTAAGTTGATAAATGTC  100

seq1  GTCCTACGTGAGATGACCCAAGCAGAGATTAGATGTTGTAAGTTGATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACGTGAGATGACCCAAGCAGAGATTAGATGTTGTAAGTTGATAGT  150

seq1  AATAAGACTGAGTCAGCAGCTGGGTGTGGGGATGCATGTCCCTTAGACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACTGAGTCAGCAGCTGGGTGTGGGGATGCATGTCCCTTAGACGG  200

seq1  AGGCAGGAAGATTGCTGCAGATTAAGGCTAGCCTCGTCTACATAGTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAGATTGCTGCAGATTAAGGCTAGCCTCGTCTACATAGTGATT  250

seq1  TCAGAGCAGTCATGGACACATAACATACTAAGACCCTGTTTCAGCAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAGTCATGGACACATAACATACTAAGACCCTGTTTCAGCAAACT  300

seq1  AAACCAACCAACCAATCAAACAGCAAAAGCAATAAATCAATAATTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACCAACCAATCAAACAGCAAAAGCAATAAATCAATAATTTAAGA  350

seq1  ATCATATAAAAATTTATGTGAGATTTAAATTGTCATTTTTTTTTCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATAAAAATTTATGTGAGATTTAAATTGTCATTTTTTTTTCTTTCT  400

seq1  GCATTCAAAGAGATGTCTAGGGAATGATTGTTTTTCAAATAGCTTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAAAGAGATGTCTAGGGAATGATTGTTTTTCAAATAGCTTTTCTG  450

seq1  AAACAATATCTTCCCTTTGAGACTATATAATGCTATTTATAAGGAGCATA  500
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACAATATCTTCCCTTTGAAACTATATAATGCTATTTATAAGGAGCATA  500

seq1  CACTACAGCAAACTAATGCTACATGTGTATCCCTTTAAAAAGTACTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGCAAACTAATGCTACATGTGTATCCCTTTAAAAAGTACTCTGT  550

seq1  ATGTGCTTCAGATAGAACCCAAGGCTTTGTGCACGCCAGGAAAGCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTCAGATAGAACCCAAGGCTTTGTGCACGCCAGGAAAGCACTAA  600

seq1  TTTCAGCAGGTTTTTATTTTATTTTATTTTATTTTTTATTTTTTGGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGGTTTTTATTTTATTTTATTTTATTTTTTATTTTTTGGGTTT  650

seq1  TTTGAGTCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT  700

seq1  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCA  750

seq1  AGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGCTAATTTCAGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCATGCGCCACCACGCCCGGCTAATTTCAGCAGT  800

seq1  TTTAAGAGTCAATCCTATTATTACTATTATTAGTTTTTTTTTCCTCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGTCAATCCTATTATTACTATTATTAGTTTTTTTTTCCTCTTAT  850

seq1  TTTTTTTTCCTCCTTCAATTGTGGGAATTGAATCCAAGGCCTTCCAATGC  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTTTTCCTCCTTCAATTGTGGGAATTGAATCC-AGGCCTTCCAATGC  899

seq1  TAAGCCCTGCCACTGCACTGTATTTCCAACCCCTCAGGAATATTCCTAAG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAAGCCCTGCCACTGCACTGTATTTCC-ACCCCTCAGGAATATTCCTAAG  948

seq1  TAGAGGATATTCATGTACATTTTTCTATCATGACCAATACTGT-ACAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGAGGATATTCATGTACATTTTTCTATCATGACCAATACTGTAACAGCC  998

seq1  TGTGCTGTGAGGCCATGTTCAGGCTTG-CACATTCCGTTG-GTGTCTTAC  1047
      |||||||||||| |||||||| ||||| ||||||||| || |||||| ||
seq2  TGTGCTGTGAGG-CATGTTCA-GCTTGCCACATTCCGGTGTGTGTCTAAC  1046

seq1  ACTGCTCTGGACAGGACTTCCAGCCCCTCACTTTCTGAC-TGCTTT  1092
      |||||| |||||||||||| |||||||  |||||||||| ||||||
seq2  ACTGCTTTGGACAGGACTT-CAGCCCCCTACTTTCTGACATGCTTT  1091

seq1: chr1_10203504_10203995
seq2: B6Ng01-147G16.g_70_561 (reverse)

seq1  TCTCCCATATCCAGAACATGCTTTAGCTAAGTTTCATTAGAAGTTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATATCCAGAACATGCTTTAGCTAAGTTTCATTAGAAGTTGTACT  50

seq1  TGTGATAATTAAAATGCAGAACGTTTACACTCTATCACAACTGAGTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAATTAAAATGCAGAACGTTTACACTCTATCACAACTGAGTGTAG  100

seq1  ACAGGTATGTTTCATACAATATCATATCAATATATAAATACTATAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATGTTTCATACAATATCATATCAATATATAAATACTATAAATAC  150

seq1  TATAAATAAATATATATACTACCATAGTTGTAACATTAACAACTAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAATATATATACTACCATAGTTGTAACATTAACAACTAGAACA  200

seq1  CAACTTGTTTTTCTCTAAACGAATTTAACCATCCAGATTCATTACAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTTTTTCTCTAAACGAATTTAACCATCCAGATTCATTACAACAC  250

seq1  AAGCTTGGATTTTATTTGTTCACTTTGTTTGAGCAGGTTCACTAGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGATTTTATTTGTTCACTTTGTTTGAGCAGGTTCACTAGATGGA  300

seq1  TGGGTACAAGAGAGTTGTGAAAGACAGTACACCTGGTGATTGATACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACAAGAGAGTTGTGAAAGACAGTACACCTGGTGATTGATACAAGG  350

seq1  CCTGAGAAGGACAACGTAGGCTCTAACAATACAGTAAACGTTGGTAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAGGACAACGTAGGCTCTAACAATACAGTAAACGTTGGTAAGGT  400

seq1  CACAACTTTATGAATCATCTTGAAACTTAAAAGATGAAAGATGTATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTTATGAATCATCTTGAAACTTAAAAGATGAAAGATGTATAAAA  450

seq1  AGCAGGTAGGTTCAGAAAAACTCCTCAAGACCCAAAGAATTC  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTAGGTTCAGAAAAACTCCTCAAGACCCAAAGAATTC  492