BAC Information

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BAC

Clone NameB6Ng01-147J10
Chromosome1 (Build37)
Map Location 154,159,466 - 154,339,390
singlet/doubletdoublet
Overlap gene5730449L18Rik, Glt25d2
Upstream geneIvns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
Downstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147J10.bB6Ng01-147J10.g
ACCDH944428DH944429
length1,0161,017
definitionDH944428|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J10, 5' end.DH944429|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,159,466 - 154,160,256)(154,338,363 - 154,339,390)
sequence
gaattctaacaaataatcaggaaaaaaaaaccttcaaattctttacactc
tcacaagaaaggagaaagaaacgcttccacacatatcctatgaacccagt
tattatggtggtttttaaaaaaagccctacaggtatcgcaagaaaatcag
cttgcaatgttttataaacaccggttttaaaagtcctggcaaacttaaca
agatgaaagtagaaaaagatcagataccatcatcaagtagaattaaacaa
atgaatacaagtacttactttcaaaaaaggggaaatagctatgaaaatca
actcaaggaatggagggtttgttatggctcagagcctgagggtagagcta
acaggtaaagaaggcatgggcaccagagagtgaggtagctggtcacattg
cacctcaggcagcagagaggcattctggtgctcagcttggactctccttt
tcatccatccagtactccaggtccaagaatgatgctgccaatctttagca
tggttctgtgtgccttaacccagtctagaattctctcaggcgtgcctaga
ggtttatcaaactgggtgattctagttcctgtcaaattgatgatcaaata
ttaaatactgcagtcaacttgacacaagcatatcacttgtagcccacaat
tacccaccccttgtccctatcagctcacagccacttcataaagaaaaatc
tattcagtccaccttcaaatgttcccgtggtctctaacagccccaatacc
gtttaaagcccaagtcttctctgcaattcaagacaatctcttaactctga
gcacttataaaatcaaaattgagtgatatagttccaatatacaatggccc
agagtaaaaattcctgttctgacaggaaagggatagagatacagcaaaga
ccacatcaaaattagaggaaggcctgactgagtaaacaccaaagcctaag
ctccattctgagcaccgaggttctcataaaatcactatactcataggtct
tgttagcccgcctctc
gaattcattattatgggaaattatgcagtgtgcatgtgctgagtttatat
agcctgatccttttttattaaaaccttcattgtttccttaggatggatcg
tctacttcatctggactgtccaattaaagaccatttcattcaaggcactt
caacctttcaaactgtagtttcttctaatgctttagcccactttcttcag
gatggaagtcattggtctgcttgtctccttcctcatcctgtggtgtcctg
actatatcagtcttctcgtttgaggactctcacttctacccaacatcagc
taaagaagcctcagggttgggtgtgagcacacaggccacaataacctctc
tctattctaaatttctgttgtctttgcacctgctcatttcacagcgcact
gtattgttagtgccatttaaatattagatctgactcttcaattaaactgt
gaatctctgaaaatggagtgttgactgtaaaatgctttgacttcctaata
cttgtgatatatgtcacttcacaaacacacacacacacacacacacacac
acacggagagagagagagagagagagagagagagagagagagaaagagag
agagagattgattcataaaatggcttcctaagggctggtccaagaagtgc
tgtcagtgagttaaccctcttctgtccttagctcatcttagtccattcaa
tcatgaattagtaactatgggaggtggtgagaagtagtctgtgtcccgag
actaatatggtacaagggaaatttatagatggagagaatgggaaacagct
acccacagacaacttggtgggtttgaaaaaaagttgtgtgccttctcttt
aaactttgttttttaagccttagtcacttaaactaacaccatgcaaacac
tggagagttttcacgcctcaatccttgctcttccgctggtggccactctg
gtgtgtcttcttactctacatcctgattccattatttcatttaaaaaggc
ttcccccttctgtggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154159466_154160256
seq2: B6Ng01-147J10.b_46_836

seq1  GAATTCTAACAAATAATCAGGAAAAAAAAACCTTCAAATTCTTTACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACAAATAATCAGGAAAAAAAAACCTTCAAATTCTTTACACTC  50

seq1  TCACAAGAAAGGAGAAAGAAACGCTTCCACACATATCCTATGAACCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAAAGGAGAAAGAAACGCTTCCACACATATCCTATGAACCCAGT  100

seq1  TATTATGGTGGTTTTTAAAAAAAGCCCTACAGGTATCGCAAGAAAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGTGGTTTTTAAAAAAAGCCCTACAGGTATCGCAAGAAAATCAG  150

seq1  CTTGCAATGTTTTATAAACACCGGTTTTAAAAGTCCTGGCAAACTTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATGTTTTATAAACACCGGTTTTAAAAGTCCTGGCAAACTTAACA  200

seq1  AGATGAAAGTAGAAAAAGATCAGATACCATCATCAAGTAGAATTAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGTAGAAAAAGATCAGATACCATCATCAAGTAGAATTAAACAA  250

seq1  ATGAATACAAGTACTTACTTTCAAAAAAGGGGAAATAGCTATGAAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACAAGTACTTACTTTCAAAAAAGGGGAAATAGCTATGAAAATCA  300

seq1  ACTCAAGGAATGGAGGGTTTGTTATGGCTCAGAGCCTGAGGGTAGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGAATGGAGGGTTTGTTATGGCTCAGAGCCTGAGGGTAGAGCTA  350

seq1  ACAGGTAAAGAAGGCATGGGCACCAGAGAGTGAGGTAGCTGGTCACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAAGAAGGCATGGGCACCAGAGAGTGAGGTAGCTGGTCACATTG  400

seq1  CACCTCAGGCAGCAGAGAGGCATTCTGGTGCTCAGCTTGGACTCTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGGCAGCAGAGAGGCATTCTGGTGCTCAGCTTGGACTCTCCTTT  450

seq1  TCATCCATCCAGTACTCCAGGTCCAAGAATGATGCTGCCAATCTTTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCCAGTACTCCAGGTCCAAGAATGATGCTGCCAATCTTTAGCA  500

seq1  TGGTTCTGTGTGCCTTAACCCAGTCTAGAATTCTCTCAGGCGTGCCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGTGTGCCTTAACCCAGTCTAGAATTCTCTCAGGCGTGCCTAGA  550

seq1  GGTTTATCAAACTGGGTGATTCTAGTTCCTGTCAAATTGATGATCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATCAAACTGGGTGATTCTAGTTCCTGTCAAATTGATGATCAAATA  600

seq1  TTAAATACTGCAGTCAACTTGACACAAGCATATCACTTGTAGCCCACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACTGCAGTCAACTTGACACAAGCATATCACTTGTAGCCCACAAT  650

seq1  TACCCACCCCTTGTCCCTATCAGCTCACAGCCACTTCATAAAGAAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACCCCTTGTCCCTATCAGCTCACAGCCACTTCATAAAGAAAAATC  700

seq1  TATTCAGTCCACCTTCAAATGTTCCCGTGGTCTCTAACAGCCCCAATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTCCACCTTCAAATGTTCCCGTGGTCTCTAACAGCCCCAATACC  750

seq1  GTTTAAAGCCCAAGTCTTCTCTGCAATTCAAGACAATCTCT  791
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGCCCAAGTCTTCTCTGCAATTCAAGACAATCTCT  791

seq1: chr1_154338363_154339390
seq2: B6Ng01-147J10.g_69_1085 (reverse)

seq1  GGCCACAGAAGTGGGAAAGACTTTTTTAAATGAAATAATAGAAATCAGGA  50
      ||||||||||| |||||   | ||||||||||||||||| | ||||||||
seq2  GGCCACAGAAGGGGGAA--GCCTTTTTAAATGAAATAAT-GGAATCAGGA  47

seq1  TGTAGATGTAAGAAGACACAGCCAGAGTTGGCCACAGGCGAATGAGCAAG  100
      |||||| ||||||||||||| |||||| |||||||  ||| | |||||||
seq2  TGTAGA-GTAAGAAGACACA-CCAGAG-TGGCCACCAGCGGAAGAGCAAG  94

seq1  GATAGAGGCGTGGAAAACTCTCCAGTGTCTGCATGGTGTTAGTTTTAAGT  150
      ||| ||||||| |||||||||||||||| ||||||||||||| |||||||
seq2  GATTGAGGCGT-GAAAACTCTCCAGTGTTTGCATGGTGTTAG-TTTAAGT  142

seq1  GGACTAAGGCTTTAAAAACAAAAGTTTTAAAGAGAA-GCACACAACTTTA  199
       ||||||||||| |||||||||   ||||||||||| |||||||||||| 
seq2  -GACTAAGGCTTAAAAAACAAA--GTTTAAAGAGAAGGCACACAACTTT-  188

seq1  TTTTCCAACCCACCAAGTTGTCTGTGGGTAGCTGTTTCCCATTCTCTCCA  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACCCACCAAGTTGTCTGTGGGTAGCTGTTTCCCATTCTCTCCA  238

seq1  TCTATAAATTTCCCTTGTACCATATTAGTCTCGGGACACAGACTACTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAATTTCCCTTGTACCATATTAGTCTCGGGACACAGACTACTTCT  288

seq1  CACCACCTCCCATAGTTACTAATTCATGATTGAATGGACTAAGATGAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTCCCATAGTTACTAATTCATGATTGAATGGACTAAGATGAGCT  338

seq1  AAGGACAGAAGAGGGTTAACTCACTGACAGCACTTCTTGGACCAGCCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGAAGAGGGTTAACTCACTGACAGCACTTCTTGGACCAGCCCTT  388

seq1  AGGAAGCCATTTTATGAATCAATCTCTCTCTCTCTTTCTCTCTCTCTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCATTTTATGAATCAATCTCTCTCTCTCTTTCTCTCTCTCTCTC  438

seq1  TCTCTCTCTCTCTCTCTCTCTCTCCGTGTGTGTGTGTGTGTGTGTGTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCCGTGTGTGTGTGTGTGTGTGTGTGTG  488

seq1  TGTGTTTGTGAAGTGACATATATCACAAGTATTAGGAAGTCAAAGCATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGAAGTGACATATATCACAAGTATTAGGAAGTCAAAGCATTT  538

seq1  TACAGTCAACACTCCATTTTCAGAGATTCACAGTTTAATTGAAGAGTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCAACACTCCATTTTCAGAGATTCACAGTTTAATTGAAGAGTCAG  588

seq1  ATCTAATATTTAAATGGCACTAACAATACAGTGCGCTGTGAAATGAGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATATTTAAATGGCACTAACAATACAGTGCGCTGTGAAATGAGCAG  638

seq1  GTGCAAAGACAACAGAAATTTAGAATAGAGAGAGGTTATTGTGGCCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGACAACAGAAATTTAGAATAGAGAGAGGTTATTGTGGCCTGTG  688

seq1  TGCTCACACCCAACCCTGAGGCTTCTTTAGCTGATGTTGGGTAGAAGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACACCCAACCCTGAGGCTTCTTTAGCTGATGTTGGGTAGAAGTGA  738

seq1  GAGTCCTCAAACGAGAAGACTGATATAGTCAGGACACCACAGGATGAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCAAACGAGAAGACTGATATAGTCAGGACACCACAGGATGAGGA  788

seq1  AGGAGACAAGCAGACCAATGACTTCCATCCTGAAGAAAGTGGGCTAAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAAGCAGACCAATGACTTCCATCCTGAAGAAAGTGGGCTAAAGC  838

seq1  ATTAGAAGAAACTACAGTTTGAAAGGTTGAAGTGCCTTGAATGAAATGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGAAACTACAGTTTGAAAGGTTGAAGTGCCTTGAATGAAATGGT  888

seq1  CTTTAATTGGACAGTCCAGATGAAGTAGACGATCCATCCTAAGGAAACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTGGACAGTCCAGATGAAGTAGACGATCCATCCTAAGGAAACAA  938

seq1  TGAAGGTTTTAATAAAAAAGGATCAGGCTATATAAACTCAGCACATGCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTTTAATAAAAAAGGATCAGGCTATATAAACTCAGCACATGCAC  988

seq1  ACTGCATAATTTCCCATAATAATGAATTC  1028
      |||||||||||||||||||||||||||||
seq2  ACTGCATAATTTCCCATAATAATGAATTC  1017