BAC Information

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BAC

Clone NameB6Ng01-147N02
Chromosome1 (Build37)
Map Location 87,897,489 - 88,002,750
singlet/doubletdoublet
Overlap geneSpata3, 2810459M11Rik, Psmd1, Htr2b
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55
Downstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147N02.bB6Ng01-147N02.g
ACCDH944590DH944591
length1,1001,151
definitionDH944590|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N02, 5' end.DH944591|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,001,647 - 88,002,750)(87,897,489 - 87,898,660)
sequence
gaattcatatgctcggccttcatgactgtactctgctcaaacacaaatgt
taatcctaccaattccaagtatcatattcagcatataagactaacaagaa
agtctatagaattctggggctgatgaggcagaacccagtatcttttcaat
taaagatatactctatattatatggtagaatacttaggtctcagctagta
cttgtacaatccttgaggtgaatacggatctattttctgaggaaggtact
agaaacaggcaatgcttactaagttgaaccttgctgggaggcaaacagag
gcagttgagtgactcccctcacatcatgatctttacagtatgcagtttca
cactgaacaaaggattgtcctactagcagttgaataaactgtctacaaac
taaaacctgttttgctcctgaaatattaggccatgacatttaacctacaa
ttatttgggttcccataaaaattccaattattccaacattactttctgta
gtttttgttcaaagacagtaaaggaatgaagttgaaactgtggtttgtgt
aggttagaggacagcttgcttagtcttggggctctggctcagggagggtg
atgctagcaggtaggtaaggacagggtagcaggaattgtttttatagaag
cagtcaggtagtctatgtgcctgattaactccttcttacatgttttcttt
ttaagcttaaatgtttgcggttccaattgattactataaatttaactaat
atctaatccaagttctgctgcaaacaggtggaacataatgcattccaaca
agaaactgtaatcctaaatcaagcccaatgcctcctgtgtgctccatggt
gccacactccagctgacattcctagttcctcctgtgctaagttgctgact
cttgtttggagaccaggtgttggttgatgtgtttgtcaaggctggccttt
cacttattatgtgacacaaacagctgcaccatgcctgtggtttccttcct
gctctcaccagcatttagatttattactattatatttttttaagatttat
ttatttattttttgtaagtaacctgtagctgtccttagataacttcagaa

gaattccctagttctgtccactgaaggacacagaagccctgaccagccag
taaccatgggcacaggtaccactgaatcctctacagcacactggttcaga
agcaagagctccttgaaacagtgactgattctaggtctggggctaagaat
gtgtcacaagcctagaagagcatgtctgatcagaaagcgagacaggactc
aataatgactattctgagaacgaaccccaggtcctgtgcaagagcaaatg
ctcttaactgcccatccacctcccctgctcccaaattacttttttttttc
ttttttaattgcaatcttgccaaaggaattcagaagctgacctcaggctg
ttcaaaggtgcagcaatttggatgtcaaaatgatcgaggacagccagaca
ctacacatgtgcctggtatactcagaggcaagatgaggcatcgaatcccc
tggcgctgaagtttcagatggttctgaactaccactcgggttctgggaac
taaccccaggtcctgtgcaagagcagcaagtgctcttagctgcccaccca
cctcccctgctccctagttattttttatttggggttcttgcagaaaccaa
taaccaagtaatagatataagggaagtaaaaactttaaaataccagtttc
tgcagtgccaggattttctccaggcaagatccatcagttcctgggtgaac
ctggagccccccccccccagtgaagctcttgccatgcgaggatcccacaa
attactgattaaaaacaaaactggagagaggcttggtaatcaagttccta
tcagcaggctacctgtcattatccaattcattacatacaatgagtggatc
acggatgtgggactgtgccccaaagtctacactgataatcatgttagtta
atgaatcattctacagccagagcagatgcatgccacaaaaactaacagaa
gcaatgataaaaggcagaaaagatctattttagattagagatgtactgac
ttaacaccattagtcatgaatcttccttctttttttttttttgtttgttt
ttcgagataggttctctggtagccctgactgtctagagctattgtagaac
gaaactggcctcaactcaaagatctgctgccctgaatcccaagtctgggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88001647_88002750
seq2: B6Ng01-147N02.b_47_1146 (reverse)

seq1  TTCTGAAG-TATCTAAGAACAGCTACAGTGTACTTACATAAAATAAATAA  49
      |||||||| |||||||| ||||||||||  |||||||| |||||||||||
seq2  TTCTGAAGTTATCTAAGGACAGCTACAGGTTACTTACAAAAAATAAATAA  50

seq1  ATAAATCTTAAAAAAATAATAATAGTAATAAAATCTAAATTGCTGGTTGA  99
      ||||||||||||||||| ||||||||||| ||||||||| |||||| |||
seq2  ATAAATCTTAAAAAAAT-ATAATAGTAAT-AAATCTAAA-TGCTGG-TGA  96

seq1  GAGCAGGAAGGAAACCACAGGCATGGTGGCAGCTGTTTGTGGTCCACATA  149
      ||||||||||||||||||||||||||| |||||||||||||   ||||||
seq2  GAGCAGGAAGGAAACCACAGGCATGGT-GCAGCTGTTTGTG--TCACATA  143

seq1  ATAAGTGAAA-GCCAGCCTTGAC-AACACATCAACCAACACCTGGTCTCC  197
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ATAAGTGAAAGGCCAGCCTTGACAAACACATCAACCAACACCTGGTCTCC  193

seq1  AAACAAGAGTCAGCAACTTAGCACAGGAGGAACTAGGAATGTCAGCTGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGTCAGCAACTTAGCACAGGAGGAACTAGGAATGTCAGCTGGA  243

seq1  GTGTGGCACCATGGAGCACACAGGAGGCATTGGGCTTGATTTAGGATTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCACCATGGAGCACACAGGAGGCATTGGGCTTGATTTAGGATTAC  293

seq1  AGTTTCTTGTTGGAATGCATTATGTTCCACCTGTTTGCAGCAGAACTTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGTTGGAATGCATTATGTTCCACCTGTTTGCAGCAGAACTTGG  343

seq1  ATTAGATATTAGTTAAATTTATAGTAATCAATTGGAACCGCAAACATTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATATTAGTTAAATTTATAGTAATCAATTGGAACCGCAAACATTTA  393

seq1  AGCTTAAAAAGAAAACATGTAAGAAGGAGTTAATCAGGCACATAGACTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAAAGAAAACATGTAAGAAGGAGTTAATCAGGCACATAGACTAC  443

seq1  CTGACTGCTTCTATAAAAACAATTCCTGCTACCCTGTCCTTACCTACCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCTTCTATAAAAACAATTCCTGCTACCCTGTCCTTACCTACCTG  493

seq1  CTAGCATCACCCTCCCTGAGCCAGAGCCCCAAGACTAAGCAAGCTGTCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATCACCCTCCCTGAGCCAGAGCCCCAAGACTAAGCAAGCTGTCCT  543

seq1  CTAACCTACACAAACCACAGTTTCAACTTCATTCCTTTACTGTCTTTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTACACAAACCACAGTTTCAACTTCATTCCTTTACTGTCTTTGAA  593

seq1  CAAAAACTACAGAAAGTAATGTTGGAATAATTGGAATTTTTATGGGAACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTACAGAAAGTAATGTTGGAATAATTGGAATTTTTATGGGAACC  643

seq1  CAAATAATTGTAGGTTAAATGTCATGGCCTAATATTTCAGGAGCAAAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTGTAGGTTAAATGTCATGGCCTAATATTTCAGGAGCAAAACA  693

seq1  GGTTTTAGTTTGTAGACAGTTTATTCAACTGCTAGTAGGACAATCCTTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGTTTGTAGACAGTTTATTCAACTGCTAGTAGGACAATCCTTTG  743

seq1  TTCAGTGTGAAACTGCATACTGTAAAGATCATGATGTGAGGGGAGTCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGAAACTGCATACTGTAAAGATCATGATGTGAGGGGAGTCACT  793

seq1  CAACTGCCTCTGTTTGCCTCCCAGCAAGGTTCAACTTAGTAAGCATTGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTCTGTTTGCCTCCCAGCAAGGTTCAACTTAGTAAGCATTGCC  843

seq1  TGTTTCTAGTACCTTCCTCAGAAAATAGATCCGTATTCACCTCAAGGATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGTACCTTCCTCAGAAAATAGATCCGTATTCACCTCAAGGATT  893

seq1  GTACAAGTACTAGCTGAGACCTAAGTATTCTACCATATAATATAGAGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTACTAGCTGAGACCTAAGTATTCTACCATATAATATAGAGTAT  943

seq1  ATCTTTAATTGAAAAGATACTGGGTTCTGCCTCATCAGCCCCAGAATTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATTGAAAAGATACTGGGTTCTGCCTCATCAGCCCCAGAATTCT  993

seq1  ATAGACTTTCTTGTTAGTCTTATATGCTGAATATGATACTTGGAATTGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTTCTTGTTAGTCTTATATGCTGAATATGATACTTGGAATTGGT  1043

seq1  AGGATTAACATTTGTGTTTGAGCAGAGTACAGTCATGAAGGCCGAGCATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAACATTTGTGTTTGAGCAGAGTACAGTCATGAAGGCCGAGCATA  1093

seq1  TGAATTC  1104
      |||||||
seq2  TGAATTC  1100

seq1: chr1_87897489_87898660
seq2: B6Ng01-147N02.g_68_1218

seq1  GAATTCCCTAGTTCTGTCCACTGAAGGACACAGAAGCCCTGACCAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGTTCTGTCCACTGAAGGACACAGAAGCCCTGACCAGCCAG  50

seq1  TAACCATGGGCACAGGTACCACTGAATCCTCTACAGCACACTGGTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGGGCACAGGTACCACTGAATCCTCTACAGCACACTGGTTCAGA  100

seq1  AGCAAGAGCTCCTTGAAACAGTGACTGATTCTAGGTCTGGGGCTAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGCTCCTTGAAACAGTGACTGATTCTAGGTCTGGGGCTAAGAAT  150

seq1  GTGTCACAAGCCTAGAAGAGCATGTCTGATCAGAAAGCGAGACAGGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAAGCCTAGAAGAGCATGTCTGATCAGAAAGCGAGACAGGACTC  200

seq1  AATAATGACTATTCTGAGAACGAACCCCAGGTCCTGTGCAAGAGCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACTATTCTGAGAACGAACCCCAGGTCCTGTGCAAGAGCAAATG  250

seq1  CTCTTAACTGCCCATCCACCTCCCCTGCTCCCAAATTACTTTTTTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTGCCCATCCACCTCCCCTGCTCCCAAATTACTTTTTTTTTTC  300

seq1  TTTTTTAATTGCAATCTTGCCAAAGGAATTCAGAAGCTGACCTCAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTGCAATCTTGCCAAAGGAATTCAGAAGCTGACCTCAGGCTG  350

seq1  TTCAAAGGTGCAGCAATTTGGATGTCAAAATGATCGAGGACAGCCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGTGCAGCAATTTGGATGTCAAAATGATCGAGGACAGCCAGACA  400

seq1  CTACACATGTGCCTGGTATACTCAGAGGCAAGATGAGGCATCGAATCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATGTGCCTGGTATACTCAGAGGCAAGATGAGGCATCGAATCCCC  450

seq1  TGGCGCTGAAGTTTCAGATGGTTCTGAACTACCACTCGGGTTCTGGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCTGAAGTTTCAGATGGTTCTGAACTACCACTCGGGTTCTGGGAAC  500

seq1  TAACCCCAGGTCCTGTGCAAGAGCAGCAAGTGCTCTTAGCTGCCCACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAGGTCCTGTGCAAGAGCAGCAAGTGCTCTTAGCTGCCCACCCA  550

seq1  CCTCCCCTGCTCCCTAGTTATTTTTTATTTGGGGTTCTTGCAGAAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTGCTCCCTAGTTATTTTTTATTTGGGGTTCTTGCAGAAACCAA  600

seq1  TAACCAAGTAATAGATATAAGGGAAGTAAAAACTTTAAAATACCAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGTAATAGATATAAGGGAAGTAAAAACTTTAAAATACCAGTTTC  650

seq1  TGCAGTGCCAGGATTTTCTCCAGGCAAGATCCATCAGTTCCTGGGTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCCAGGATTTTCTCCAGGCAAGATCCATCAGTTCCTGGGTGAAC  700

seq1  CTGGAGCCCCCCCCCCCCAGTGAAGCTCTTGCCATGCGAGGATCCCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCCCCCCCCCCCAGTGAAGCTCTTGCCATGCGAGGATCCCACAA  750

seq1  ATTACTGATTAAAAACAAAACTGGAGAGAGGCTTGGTAATCAAGTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGATTAAAAACAAAACTGGAGAGAGGCTTGGTAATCAAGTTCCTA  800

seq1  TCAGCAGGCTACCTGTCATTATCCAATTCAATTACATACAATGAGTGGAT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAGCAGGCTACCTGTCATTATCCAATTC-ATTACATACAATGAGTGGAT  849

seq1  CACGGATGTGGGACCTGTGCCCCAAAGTCTACACTGATAATCATGTTAG-  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CACGGATGTGGGA-CTGTGCCCCAAAGTCTACACTGATAATCATGTTAGT  898

seq1  TAATGACACA-TCTACAGCCAGAGCAGATGCATGCCACAAAAACAAACAA  948
      ||||||  || ||||||||||||||||||||||||||||||||| ||| |
seq2  TAATGAATCATTCTACAGCCAGAGCAGATGCATGCCACAAAAACTAAC-A  947

seq1  GAAGCAATGATAAAAAGGCAAGAAAAGATCTATTTTAGATTAGAGATGTA  998
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GAAGCAATGAT-AAAAGGC-AGAAAAGATCTATTTTAGATTAGAGATGTA  995

seq1  CTGACTAAACAACCATTTAGTCATGAATCTTTCTTTCTTTTTTTTTTTTT  1048
      |||||| ||| |||| |||||||||||    |||| ||| ||||||||||
seq2  CTGACTTAAC-ACCA-TTAGTCATGAA----TCTTCCTTCTTTTTTTTTT  1039

seq1  TTTGTTTGTTTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTGACTGTCC  1098
      ||||||||  ||||||||||||||  ||||||| |||||||||||||| |
seq2  TTTGTTTG--TTTTTCGAGATAGG--TTCTCTG-GTAGCCCTGACTGT-C  1083

seq1  TAGAGCTCACTTTGTAG-ACCAGACTGGCCTCGAACTCAGAGATCTGCCT  1147
      |||||||    |||||| || | ||||||||| |||||| ||||||| ||
seq2  TAGAGCT---ATTGTAGAACGAAACTGGCCTC-AACTCAAAGATCTG-CT  1128

seq1  GCCTCTGATTCCCAAGTGCTGGGTG  1172
      ||| |||| |||||||| |||||||
seq2  GCC-CTGAATCCCAAGT-CTGGGTG  1151