BAC Information

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BAC

Clone NameB6Ng01-148C01
Chromosome1 (Build37)
Map Location 42,569,733 - 42,687,474
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148C01.bB6Ng01-148C01.g
ACCDH944820DH944821
length1,1881,121
definitionDH944820|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C01, 5' end.DH944821|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,569,733 - 42,570,940)(42,686,342 - 42,687,474)
sequence
gaattcactatacaggtgaatagagacatagataatccctccaaaattca
aagttttgtatgttaatgtgccaaagcatcagaactggaagcctcagatt
ttgtatcatgtagtcaactagattcagaagtaaaaatttgtgcttagtca
caaggtgcaagtaagcaagcaagccagcctatatgtgcagcagagctcct
taggcactagacacacctctgccatggtgcagtgactcacacactgaatg
catgtttagaaggtttgcaagacacaggtcataaccccaaagaagataga
ggcatatataggagaccagcctagacaacagaggagacacaaagtttgta
gaaactcagtataattaaattcagtatagagatgtcttagatctcaaaca
gcccacaagacatataaagacttggaggccagcctgtgacatctttgaga
gatgttgggacatttaagatatgggacctaggagagaaaaattagatgac
tgagatgtgcctttagaagggaatggtgggggctggagagatggctcagt
ggttaagagcactgactgctctttcagaggtcctgagttcaattcccagc
aaccacacagtgactcactaccatctgtaatgggatatgatgccctcttc
tgaagacatctgcatctgaaaacagctacagtatattcacatataatcaa
tcaataaataaatctttttttaaaaaaagagatggtagctgccaggtttc
ttgttcttctgccctgattccatcatgagcttcctacataatgttctatc
ttaccacagactctaaggaaacagagccaggctaccatgggtcatggaca
gaaaaccactgaacatgtgagctagactcaactttccttcctttaagttg
cttttctctactattttgtgccaaagtcacaaagctactagcactaaaat
gatctcctcaggaacagaatcttcagtgcccaaggtatctcatattgagg
aaatttatagatagagaagaggcagaacaaaccaatcaccctcattagat
atcattttctgtcatgacgatacttgatcaaggctattttctctaggcat
acccattctttcatggaaacaaaagcttctccttgaagtgcattcactgg
tactgctggtttaaatggcacctgcacaagctggagtt
gaattcattccagtcaagtctatttagagcagtggttctcaaccttctta
atgttgcaaacttttaatacagttcctcatgctttagtgacccccccccc
ttaatcataaaattattttgttgctactttataactgtgattttgctacg
gttatgaattttaatgcaaatcttggttgtctttgatggtgttaggcgac
ccctgtgaaagggtcgagacccacaggttgagaaccactgatttagagcc
ttctttgtttttgtttttctaatctaggaaacctgaaagaacagaggtcc
actgtcagcatttgcacaggaggaagtatttcgaagcccccatcacctcg
tctggccttatagacctgctgatgaggaaggccttctgctcccctccccc
aaccctctcctctttccatctcttgcctaaaggctgctccgtttggggga
ctgtgcccaaggtgctgcatggtcgaccgaccgaccccagagaaaggcag
gcatcatcatctcagctgctccctctgctctaaggaccggggactaggaa
cattctggcaagagaagggagggggggccaagcttggagtcacacatggc
tgcatttcgtatggcaaggctttcttgtttgtgctttcttcctatggaaa
aaaaaaaggctctggaaggggcctggggagccagatcaaatgttcaaatg
tactggcagggagccaaggctcaacttctctgccaggaactccacgttct
caagtcttcactgctgttgaaactgatcgggaaggttaatgagattaata
tggccaaacactgtgggcttctgggaagcaaacagccaggtagggaggcc
cagtgttggaccaaggtggctggaaataaggtatacaaccccactcctaa
gaaaagcttgagtgtttttaccggacaatccctgtgccggggctggcgaa
ggaagcgcacagaactctacgtcattgctgagtgagtgagtgacctgccg
gtttcatcctcaccagctctgctagcacttgccacctatgtagttcccta
ggacttttttttttttttgcaagagtagaatgttcatgaaaaatgggaaa
ataccagccatgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42569733_42570940
seq2: B6Ng01-148C01.b_47_1234

seq1  GAATTCACTATACAGGTGAATAGAGACATAGATAATCCCTCCAAAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATACAGGTGAATAGAGACATAGATAATCCCTCCAAAATTCA  50

seq1  AAGTTTTGTATGTTAATGTGCCAAAGCATCAGAACTGGAAGCCTCAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGTATGTTAATGTGCCAAAGCATCAGAACTGGAAGCCTCAGATT  100

seq1  TTGTATCATGTAGTCAACTAGATTCAGAAGTAAAAATTTGTGCTTAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCATGTAGTCAACTAGATTCAGAAGTAAAAATTTGTGCTTAGTCA  150

seq1  CAAGGTGCAAGTAAGCAAGCAAGCCAGCCTATATGTGCAGCAGAGCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCAAGTAAGCAAGCAAGCCAGCCTATATGTGCAGCAGAGCTCCT  200

seq1  TAGGCACTAGACACACCTCTGCCATGGTGCAGTGACTCACACACTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACTAGACACACCTCTGCCATGGTGCAGTGACTCACACACTGAATG  250

seq1  CATGTTTAGAAGGTTTGCAAGACACAGGTCATAACCCCAAAGAAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTAGAAGGTTTGCAAGACACAGGTCATAACCCCAAAGAAGATAGA  300

seq1  GGCATATATAGGAGACCAGCCTAGACAACAGAGGAGACACAAAGTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATATAGGAGACCAGCCTAGACAACAGAGGAGACACAAAGTTTGTA  350

seq1  GAAACTCAGTATAATTAAATTCAGTATAGAGATGTCTTAGATCTCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGTATAATTAAATTCAGTATAGAGATGTCTTAGATCTCAAACA  400

seq1  GCCCACAAGACATATAAAGACTTGGAGGCCAGCCTGTGACATCTTTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAAGACATATAAAGACTTGGAGGCCAGCCTGTGACATCTTTGAGA  450

seq1  GATGTTGGGACATTTAAGATATGGGACCTAGGAGAGAAAAATTAGATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGGACATTTAAGATATGGGACCTAGGAGAGAAAAATTAGATGAC  500

seq1  TGAGATGTGCCTTTAGAAGGGAATGGTGGGGGCTGGAGAGATGGCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTGCCTTTAGAAGGGAATGGTGGGGGCTGGAGAGATGGCTCAGT  550

seq1  GGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGC  600

seq1  AACCACACAGTGACTCACTACCATCTGTAATGGGATATGATGCCCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACAGTGACTCACTACCATCTGTAATGGGATATGATGCCCTCTTC  650

seq1  TGAAGACATCTGCATCTGAAAACAGCTACAGTATATTCACATATAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATCTGCATCTGAAAACAGCTACAGTATATTCACATATAATCAA  700

seq1  TCAATAAATAAATCTTTTTTTAAAAAAAGAGATGGTAGCTGCCAGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAATAAATCTTTTTTTAAAAAAAGAGATGGTAGCTGCCAGGTTTC  750

seq1  TTGTTCTTCTGCCCTGATTCCATCATGAGCTTCCTACATAATGTTCTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCTGCCCTGATTCCATCATGAGCTTCCTACATAATGTTCTATC  800

seq1  TTACCACAGACTCTAAGGAAACAGAGCCAGGCTACCATGGGTCATGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACAGACTCTAAGGAAACAGAGCCAGGCTACCATGGGTCATGGACA  850

seq1  GAAAACCACTGAACATGTGAGCTAGACTCAACTTTCCTTCCTTTTAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAAACCACTGAACATGTGAGCTAGACTCAACTTTCCTTCC-TTTAAGTT  899

seq1  GCTTTTCTCTACTATTTTGTGCCAAAGTCACAAAGCTAACTAGCACTAAA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTTTTCTCTACTATTTTGTGCCAAAGTCACAAAGCT-ACTAGCACTAAA  948

seq1  ATGATCTCCTCAAGGAACAGAATCTTCAGTGCCCCAAGGTATCTCCATAT  1000
      ||||||||||| ||||||||||||||||||| |||||||||||| |||||
seq2  ATGATCTCCTC-AGGAACAGAATCTTCAGTG-CCCAAGGTATCT-CATAT  995

seq1  TGAGGAAATTTATAGGATAGGAGAAGAGGCCAGAACAAACCAATCACCCT  1050
      |||||||||||||| |||| ||||||||| ||||||||||||||||||||
seq2  TGAGGAAATTTATA-GATA-GAGAAGAGG-CAGAACAAACCAATCACCCT  1042

seq1  CATTAGATATCATTTTCTGTTCATGACGATTAACTTGATCAAGGCTATTT  1100
      ||||||||||||||||||| ||||||||||  ||||||||||||||||||
seq2  CATTAGATATCATTTTCTG-TCATGACGAT--ACTTGATCAAGGCTATTT  1089

seq1  TCTCCATAGGCAATACCCATTCTTTCATGAAAACAAAAGCTTCTCTCTGA  1150
      ||||  ||||| ||||||||||||||||| |||||||||||||||  |||
seq2  TCTC--TAGGC-ATACCCATTCTTTCATGGAAACAAAAGCTTCTCCTTGA  1136

seq1  AGTGCATTCAACTGTGTACTGGCTGGTTTTATATGTCAACTTGACACAAG  1200
      ||||||||| |||| ||||| ||||| |||| ||| || ||   ||||||
seq2  AGTGCATTC-ACTG-GTACT-GCTGG-TTTAAATGGCACCT--GCACAAG  1180

seq1  CTGGAGTT  1208
      ||||||||
seq2  CTGGAGTT  1188

seq1: chr1_42686342_42687474
seq2: B6Ng01-148C01.g_65_1185 (reverse)

seq1  CCCCCCCCCCATGGCTGTGTTATTTCACCATTTTTCATGAAACACTCAAA  50
      |||||||||||||||  || |||||  |||||||||||| |||| || | 
seq2  CCCCCCCCCCATGGC--TGGTATTTTCCCATTTTTCATG-AACATTCTA-  46

seq1  CTCTTTTGCAAAAAAAAAAAAAAAAGTCACTAGGGGAACTACATAGGTGG  100
        || ||||  ||||||||||||||||| ||| |||||||||||||||||
seq2  --CTCTTGC--AAAAAAAAAAAAAAGTC-CTA-GGGAACTACATAGGTGG  90

seq1  CAAGTGCTAGGCAGAGCTGGTGA-GATGAAAACCGACCAGGTCACTCACT  149
      ||||||||| ||||||||||||| ||||||| | |  |||||||||||||
seq2  CAAGTGCTA-GCAGAGCTGGTGAGGATGAAACCGG--CAGGTCACTCACT  137

seq1  CACCCTCAGCAATGACGTAGAGTTCTGTGCGCTTCCCTCGCCAGCCCCGG  199
      ||  |||||||||||||||||||||||||||||||| |||||||||||||
seq2  CA--CTCAGCAATGACGTAGAGTTCTGTGCGCTTCCTTCGCCAGCCCCGG  185

seq1  CACAGGGATTGTCCGGTAAAAACACTCAAGCTTTTC-TAGGAGT-GGGTT  247
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  CACAGGGATTGTCCGGTAAAAACACTCAAGCTTTTCTTAGGAGTGGGGTT  235

seq1  GTATACCTTATTTCCAGCCACCTTGGTCCAACACTGGGCCTCCCTACCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCTTATTTCCAGCCACCTTGGTCCAACACTGGGCCTCCCTACCTG  285

seq1  GCTGTTTGCTTCCCAGAAGCCCACAGTGTTTGGCCATATTAATCTCATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGCTTCCCAGAAGCCCACAGTGTTTGGCCATATTAATCTCATTA  335

seq1  ACCTTCCCGATCAGTTTCAACAGCAGTGAAGACTTGAGAACGTGGAGTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCGATCAGTTTCAACAGCAGTGAAGACTTGAGAACGTGGAGTTC  385

seq1  CTGGCAGAGAAGTTGAGCCTTGGCTCCCTGCCAGTACATTTGAACATTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAGAAGTTGAGCCTTGGCTCCCTGCCAGTACATTTGAACATTTG  435

seq1  ATCTGGCTCCCCAGGCCCCTTCCAGAGCCTTTTTTTTTTCCATAGGAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTCCCCAGGCCCCTTCCAGAGCCTTTTTTTTTTCCATAGGAAGA  485

seq1  AAGCACAAACAAGAAAGCCTTGCCATACGAAATGCAGCCATGTGTGACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAACAAGAAAGCCTTGCCATACGAAATGCAGCCATGTGTGACTC  535

seq1  CAAGCTTGGCCCCCCCTCCCTTCTCTTGCCAGAATGTTCCTAGTCCCCGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGGCCCCCCCTCCCTTCTCTTGCCAGAATGTTCCTAGTCCCCGG  585

seq1  TCCTTAGAGCAGAGGGAGCAGCTGAGATGATGATGCCTGCCTTTCTCTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAGCAGAGGGAGCAGCTGAGATGATGATGCCTGCCTTTCTCTGG  635

seq1  GGTCGGTCGGTCGACCATGCAGCACCTTGGGCACAGTCCCCCAAACGGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGTCGGTCGACCATGCAGCACCTTGGGCACAGTCCCCCAAACGGAG  685

seq1  CAGCCTTTAGGCAAGAGATGGAAAGAGGAGAGGGTTGGGGGAGGGGAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTAGGCAAGAGATGGAAAGAGGAGAGGGTTGGGGGAGGGGAGCA  735

seq1  GAAGGCCTTCCTCATCAGCAGGTCTATAAGGCCAGACGAGGTGATGGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTTCCTCATCAGCAGGTCTATAAGGCCAGACGAGGTGATGGGGG  785

seq1  CTTCGAAATACTTCCTCCTGTGCAAATGCTGACAGTGGACCTCTGTTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAAATACTTCCTCCTGTGCAAATGCTGACAGTGGACCTCTGTTCTT  835

seq1  TCAGGTTTCCTAGATTAGAAAAACAAAAACAAAGAAGGCTCTAAATCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTCCTAGATTAGAAAAACAAAAACAAAGAAGGCTCTAAATCAGT  885

seq1  GGTTCTCAACCTGTGGGTCTCGACCCTTTCACAGGGGTCGCCTAACACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAACCTGTGGGTCTCGACCCTTTCACAGGGGTCGCCTAACACCA  935

seq1  TCAAAGACAACCAAGATTTGCATTAAAATTCATAACCGTAGCAAAATCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAACCAAGATTTGCATTAAAATTCATAACCGTAGCAAAATCAC  985

seq1  AGTTATAAAGTAGCAACAAAATAATTTTATGATTAAGGGGGGGGGGTCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAAGTAGCAACAAAATAATTTTATGATTAAGGGGGGGGGGTCAC  1035

seq1  TAAAGCATGAGGAACTGTATTAAAAGTTTGCAACATTAAGAAGGTTGAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATGAGGAACTGTATTAAAAGTTTGCAACATTAAGAAGGTTGAGA  1085

seq1  ACCACTGCTCTAAATAGACTTGACTGGAATGAATTC  1133
      ||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCTCTAAATAGACTTGACTGGAATGAATTC  1121