BAC Information

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BAC

Clone NameB6Ng01-148C18
Chromosome1 (Build37)
Map Location 56,889,693 - 56,890,750
singlet/doubletsinglet
Overlap geneSatb2
Upstream gene9130227L01Rik, Hsfy2
Downstream geneEG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148C18.bB6Ng01-148C18.g
ACCDH944854DH944855
length1,2171,058
definitionDH944854|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C18, 5' end.DH944855|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagatggtgcctacatagagcatctgtccctatgttctagcatc
tttgattcaggaaggtgttctgcatattaccaaaagagaaatatataaac
accaagccagcaacaaactctgatctacagtagtgccctgccttcaagat
atgttagtaggagcaaccaatcaatacctgattttccttaagatgcattt
cacaagatggaaccaataccctatacagcctgggtggaaaagaacctgag
aacagatagcccaggaacctagggttaaactaaatactactgatataaaa
caatatcaacaacataagtagtgataaaatgactcctaatgatactctac
tctgctcatagatcagtgctgttctcagtcatcatcagagaagcttcctc
ccacagcagttcgaaagaaattcagagacccacagccaatcatgagagaa
ggagagagaaacagaaaaagcttggaacacaaaaccctaaggaggctgtc
ttcatcctctcagggctcagggaaccctatggaagaggaggcagaaaggg
tgtaagagccagagtgtacagaggacattagggaaacaacctaaaccaat
ggttctccacctttttagtgctgtaaccctttaagacagttcccatgttg
tgctgatcccctaaccataaaattatttttattgcttcttcataactgta
attttgctgctgttatgaattgtaatctaaatatctgtgttttctgattg
ccttaggtaactcctgtgaaagaactgctcaactcccaaggggtcatgac
ccacaggttgaaaatcacagttctaaatcaacatgaccaaacttcacaag
aactcacagagactgagccaccagtcattcacaagggcctgggcaggtct
accccagaaggggcctctagggctgaaagaagtggcacatgcccccatcc
ctgatacagaagtgatctccattgatagctacttataagtcgaaaattta
gctcttgagcagagtatcactggggaacaattacttgtaagagtaggtgc
acgcctagcaggagatgaccaacggaattataacccaatggcattctgaa
gttcttgtctcacactgtaaggtcaggccttcttttgcgaagtttatctt
acatttttccctataagtttttccgttgcctaacccgccagtctgggagt
tattatggcctcccgat
gaattctttcctttgtataaagaacccccgagaaaacactttgggaccag
gagatttttattaaaatataatttattttctggtagtgataaaaatttat
cttcattttttcatgtgcatggcacttgaaaattaaccattacctgtctc
ttgagttgtggggggaagggctatagaagtacttggaaaacacatttgca
agcaagtggtaagataccttgttttcattcttcctaactctctaactctc
ccaagctcccagtttattgcaagaaaagatcaggtctgcgcaaatgtggc
ctctcacttgtaaaaacaaggcagtgttgtgttacagattagtttataaa
tccccagtggcttcacagttcagtgcccacagctgctgcacacaggcctg
ggtttttgtctcctctcggtgctgcagccggcagttgaaggggaaaatgg
aatgatcaggttattaacatggaggccgcgaggaggaggctgcacaatga
gaacagctggtgttgctgtcttggctgatgcagcggagataatcaaatct
tgccttttttttttgggtaaaggcagaagacacagtggagagttagacaa
acaacagcttatgatatgatatggggtttttacaatgcgtgtcaggagct
ttcgttggcttacagtgatgatggagagtatgtggagacttgggatttgt
ttctcgcaacctcagttgtgtttatgcaccttttaagaagaaaaaaaatt
ctacccttttgcaagagatgaattgtgggacagttcttggtgttaaaatt
agcgacgtagctttggaagtgatgggttagaaagctactgggtaaaatat
ttgacacgagtcagtgagcgatgttgacagcctctgtattattttcatat
aagccatcatttgcattgcatttccttcctcatgcagttgtaagagaggg
aacatccggctggcagaattgggaccaggcacttgcagtgtgcagttgac
ccactgtcctcccttcccgaggtgtggccaaaggggctctaagcccactt
tgtccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56889693_56890750
seq2: B6Ng01-148C18.g_64_1121 (reverse)

seq1  TGTGGACACGCTGGGCTCAGAGCCCCCTTGGCCACACCTGCAGGAAGGGA  50
      ||||||||   |||||| |||||||| |||||||||||| | ||||||||
seq2  TGTGGACAAAGTGGGCTTAGAGCCCCTTTGGCCACACCT-CGGGAAGGGA  49

seq1  -GACAGTGGGTCAACCTGCAC-CTGCAAGTGCCTTGTCCCAACTCTGCCA  98
       ||||||||||||| |||||| |||||||||||| ||||||| |||||||
seq2  GGACAGTGGGTCAA-CTGCACACTGCAAGTGCCTGGTCCCAATTCTGCCA  98

seq1  GCCGGATGTTCCCTCTCTTACAACTGCATGAGGAAGGAAATGCAATGCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGATGTTCCCTCTCTTACAACTGCATGAGGAAGGAAATGCAATGCAA  148

seq1  ATGATGGCTTATATGAAAATAATACAGAGGCTGTCAACATCGCTCACTGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCTTATATGAAAATAATACAGAGGCTGTCAACATCGCTCACTGA  198

seq1  CTCGTGTCAAAATATTTTACCCAGTAGCTTTCTAACCCATCACTTCC-AA  247
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CTCGTGTC-AAATATTTTACCCAGTAGCTTTCTAACCCATCACTTCCAAA  247

seq1  GCTACGTCGCTAATTTTAACACCAAGAACTGTCCCACAATTCATCTCTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTCGCTAATTTTAACACCAAGAACTGTCCCACAATTCATCTCTTG  297

seq1  CAAAAGGGTAGAATTTTTTTTCTTCTTAAAAGGTGCATAAACACAACTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGTAGAATTTTTTTTCTTCTTAAAAGGTGCATAAACACAACTGA  347

seq1  GGTTGCGAGAAACAAATCCCAAGTCTCCACATACTCTCCATCATCACTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCGAGAAACAAATCCCAAGTCTCCACATACTCTCCATCATCACTGT  397

seq1  AAGCCAACGAAAGCTCCTGACACGCATTGTAAAAACCCCATATCATATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACGAAAGCTCCTGACACGCATTGTAAAAACCCCATATCATATCA  447

seq1  TAAGCTGTTGTTTGTCTAACTCTCCACTGTGTCTTCTGCCTTTACCCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTTGTTTGTCTAACTCTCCACTGTGTCTTCTGCCTTTACCCAAA  497

seq1  AAAAAAAGGCAAGATTTGATTATCTCCGCTGCATCAGCCAAGACAGCAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGCAAGATTTGATTATCTCCGCTGCATCAGCCAAGACAGCAAC  547

seq1  ACCAGCTGTTCTCATTGTGCAGCCTCCTCCTCGCGGCCTCCATGTTAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGTTCTCATTGTGCAGCCTCCTCCTCGCGGCCTCCATGTTAATA  597

seq1  ACCTGATCATTCCATTTTCCCCTTCAACTGCCGGCTGCAGCACCGAGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCATTCCATTTTCCCCTTCAACTGCCGGCTGCAGCACCGAGAGG  647

seq1  AGACAAAAACCCAGGCCTGTGTGCAGCAGCTGTGGGCACTGAACTGTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAACCCAGGCCTGTGTGCAGCAGCTGTGGGCACTGAACTGTGAA  697

seq1  GCCACTGGGGATTTATAAACTAATCTGTAACACAACACTGCCTTGTTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGGGATTTATAAACTAATCTGTAACACAACACTGCCTTGTTTTT  747

seq1  ACAAGTGAGAGGCCACATTTGCGCAGACCTGATCTTTTCTTGCAATAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAGAGGCCACATTTGCGCAGACCTGATCTTTTCTTGCAATAAAC  797

seq1  TGGGAGCTTGGGAGAGTTAGAGAGTTAGGAAGAATGAAAACAAGGTATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTTGGGAGAGTTAGAGAGTTAGGAAGAATGAAAACAAGGTATCT  847

seq1  TACCACTTGCTTGCAAATGTGTTTTCCAAGTACTTCTATAGCCCTTCCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTGCTTGCAAATGTGTTTTCCAAGTACTTCTATAGCCCTTCCCC  897

seq1  CCACAACTCAAGAGACAGGTAATGGTTAATTTTCAAGTGCCATGCACATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACTCAAGAGACAGGTAATGGTTAATTTTCAAGTGCCATGCACATG  947

seq1  AAAAAATGAAGATAAATTTTTATCACTACCAGAAAATAAATTATATTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAAGATAAATTTTTATCACTACCAGAAAATAAATTATATTTTA  997

seq1  ATAAAAATCTCCTGGTCCCAAAGTGTTTTCTCGGGGGTTCTTTATACAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATCTCCTGGTCCCAAAGTGTTTTCTCGGGGGTTCTTTATACAAA  1047

seq1  GGAAAGAATTC  1058
      |||||||||||
seq2  GGAAAGAATTC  1058