BAC Information

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BAC

Clone NameB6Ng01-148H14
Chromosome1 (Build37)
Map Location 194,022,139 - 194,023,060
singlet/doubletsinglet
Overlap geneKcnh1
Upstream geneNenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148H14.b
ACCDH945075
length922
definitionDH945075|Mus musculus domesticus DNA, BAC clone: B6Ng01-148H14, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtatctgggaatttccacctaagggagacctttgcacctctgg
gtctcactgaagaagccacgatgaagcctgacatgaagtgtgaatccctc
cagaggtctaagagatgttctacagagtcaacatttactgctaatttcct
ccctggcatacacctcacccagtaccattcttggcttttataactgtgtc
ttttctcatgaggttggatgtgagatggtcagatcctgttaggtcacagg
aaaagatggcagaaagtgagaagctttgtttccatggtgtcgtagcttcc
ttcagggtgctcatgtactgatgtgatccttcagtgaaccttggatctgg
aattggttccgtgccctggtagtagagagctgtctacagagtttcaacat
ctctcccggctgggctctcagggctgctgctgtaacagtgtaacaatcaa
gtgtgtatcttaatgacaagcccttcaagcctttctgattgggtgccact
gaatcacaccagtcgtcagttgtcttacactaggatgattcactacataa
aattaaacggtagctcttttgattagcaccgtgttgcttaaaactgatgt
tctgaaacgagctgagtcaatccaccattatcatcataattagtaagaag
gagtactggagaccagcagttcccacagctttatgtggctgggcagtgac
atcaggtgtcctttgttttgttttgggacagggtctttttggtgcaagtg
ctggagtaggaagagcagacctctgtgtcctctgtctttccttgaagctg
ctgtgctttgtatgctagagtcagtgttgggacgacataagatatagcag
actttcatatccatggcttaactttgtcgtgtattaagagttacttacat
ggtcatcctttcatcctcagct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_194022139_194023060
seq2: B6Ng01-148H14.b_44_965

seq1  GAATTCTGTATCTGGGAATTTCCACCTAAGGGAGACCTTTGCACCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATCTGGGAATTTCCACCTAAGGGAGACCTTTGCACCTCTGG  50

seq1  GTCTCACTGAAGAAGCCACGATGAAGCCTGACATGAAGTGTGAATCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTGAAGAAGCCACGATGAAGCCTGACATGAAGTGTGAATCCCTC  100

seq1  CAGAGGTCTAAGAGATGTTCTACAGAGTCAACATTTACTGCTAATTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCTAAGAGATGTTCTACAGAGTCAACATTTACTGCTAATTTCCT  150

seq1  CCCTGGCATACACCTCACCCAGTACCATTCTTGGCTTTTATAACTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCATACACCTCACCCAGTACCATTCTTGGCTTTTATAACTGTGTC  200

seq1  TTTTCTCATGAGGTTGGATGTGAGATGGTCAGATCCTGTTAGGTCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATGAGGTTGGATGTGAGATGGTCAGATCCTGTTAGGTCACAGG  250

seq1  AAAAGATGGCAGAAAGTGAGAAGCTTTGTTTCCATGGTGTCGTAGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGGCAGAAAGTGAGAAGCTTTGTTTCCATGGTGTCGTAGCTTCC  300

seq1  TTCAGGGTGCTCATGTACTGATGTGATCCTTCAGTGAACCTTGGATCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTGCTCATGTACTGATGTGATCCTTCAGTGAACCTTGGATCTGG  350

seq1  AATTGGTTCCGTGCCCTGGTAGTAGAGAGCTGTCTACAGAGTTTCAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTCCGTGCCCTGGTAGTAGAGAGCTGTCTACAGAGTTTCAACAT  400

seq1  CTCTCCCGGCTGGGCTCTCAGGGCTGCTGCTGTAACAGTGTAACAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCGGCTGGGCTCTCAGGGCTGCTGCTGTAACAGTGTAACAATCAA  450

seq1  GTGTGTATCTTAATGACAAGCCCTTCAAGCCTTTCTGATTGGGTGCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATCTTAATGACAAGCCCTTCAAGCCTTTCTGATTGGGTGCCACT  500

seq1  GAATCACACCAGTCGTCAGTTGTCTTACACTAGGATGATTCACTACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACACCAGTCGTCAGTTGTCTTACACTAGGATGATTCACTACATAA  550

seq1  AATTAAACGGTAGCTCTTTTGATTAGCACCGTGTTGCTTAAAACTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACGGTAGCTCTTTTGATTAGCACCGTGTTGCTTAAAACTGATGT  600

seq1  TCTGAAACGAGCTGAGTCAATCCACCATTATCATCATAATTAGTAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACGAGCTGAGTCAATCCACCATTATCATCATAATTAGTAAGAAG  650

seq1  GAGTACTGGAGACCAGCAGTTCCCACAGCTTTATGTGGCTGGGCAGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGGAGACCAGCAGTTCCCACAGCTTTATGTGGCTGGGCAGTGAC  700

seq1  ATCAGGTGTCCTTTGTTTTGTTTTGGGACAGGGTCTTTTTGGTGCAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGTCCTTTGTTTTGTTTTGGGACAGGGTCTTTTTGGTGCAAGTG  750

seq1  CTGGAGTAGGAAGAGCAGACCTCTGTGTCCTCTGTCTTTCCTTGAAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAGGAAGAGCAGACCTCTGTGTCCTCTGTCTTTCCTTGAAGCTG  800

seq1  CTGTGCTTTGTATGCTAGAGTCAGTGTTGGGACGACATAAGATATTAGCA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGTGCTTTGTATGCTAGAGTCAGTGTTGGGACGACATAAGATA-TAGCA  849

seq1  GAC-TTCATATCCATGGCTTAACTTTGCCGTGTATTAAGAGTTACTTACA  899
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GACTTTCATATCCATGGCTTAACTTTGTCGTGTATTAAGAGTTACTTACA  899

seq1  TGGTCCATCCTTTCAT-CTCAGCT  922
      |||| ||||||||||| |||||||
seq2  TGGT-CATCCTTTCATCCTCAGCT  922