BAC Information

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BAC

Clone NameB6Ng01-148L19
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,49043,565,518 - 43,566,649
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148L19.bB6Ng01-148L19.g
ACCDH945263DH945264
length4841,127
definitionDH945263|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L19, 5' end.DH945264|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,490)(43,565,518 - 43,566,649)
sequence
tgtcctcctatgacagagagttgaagagcaacccaatccaaggttgcctg
aggcctctttctcagtgcctttaacctgatcaagaagtgcctggtcatgg
aaggggaagagagaatgaattctgtcctcctatgacagagagttgaagag
caacccagtccaaggttgcctgaggcctctttctcagtgcctttaacctg
atcgtgaaagaagtagcctgaaaccctgatatagctgtctcctgtgaggc
tatcccagtgcctggcaaatacaaaagtggatgctcacagtcatctatta
gatggaatacagggcccccaatggaggagctagagaaagtacccaaggag
ctaaaggggtccctataggaggaacaacaatatgaactaaccagtacccc
tagagctcatgtctctagctgcatatgtaacagaggatggcctagtcggc
catcaataggaggagaggcccttggtcttgcaaa
gaattcatttttaaatcaaaatttatgaacttgccttgtaacacatcatg
atagtcctgcttgaattatcacttcctatttgagtaaaatagaattcgtt
ttttctgtgcggcttttaccattttggggacataatcatcctagggatga
attaatagatctcctccaagtgagctgccaggacagatgccctctgggtt
tgaaatgattaaagatgccaatgaactctcaggggaatctgcagagtgca
ccagagttcccttgaaaatgccagaggaaaccagaagtgtttgtccaagt
gtgtgcacagtgactgcactgccaattccacaagcagctcggagtgtggg
cacctgtgttagctgcttgcctcttaactaccttgtagctttgaggttcg
agtctcagatttcccggtatgggcaggtgaatgcttttagccttaggatt
ggggattcggttggtggcacctgggcacatggcaatgcaagagactatca
gttgtagataaggctctgtgtggccctcttcctatgaacttgcctctgct
gcctctggaagctttcctaccgtttgcggcagtgtgtagtagtagagaag
agggctggtgatacttgggagcctttaccccgttaagatttctttacctg
ctactcgtgcagtatgaatgtgcctgtggggtgtgtgtgttgctgcctgt
gagagcaggtgtctaagcccagaagaggatatggagtctcctaggagtta
cagttacaagcagttgtgagcctccaatatgggtgctgggaaaccaaact
ctggtcctctgcaagagcagtaaacacttttaactgctgggcaccagtgt
tcttttttcgtttttctcttttttctttctttttgggatggctaattgag
ctcaaacaagcaagcgcacttaatatgtgttccttttattctctgcagat
cccacgggttccttctcctatagtgtcatcccagctggctaggagcttgg
gacgatcactatagcttctgcacctcaaggtgtcctcagacagcagaaac
tcatctttttgaaaggtgctacaattttccagtcacctctgtaactgcgt
gcccagagtaagctatacattcctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573490
seq2: B6Ng01-148L19.b_374_537

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||| ||      |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTC------CCT  44

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      ||||  |||||||||||||||| ||||||||| ||  |||||||||||||
seq2  ATAGGAGGAACAACAATATGAACTAACCAGTACCCCTAGAGCTCATGTCT  94

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| |||| ||||||||||| |||||||| | ||| ||
seq2  CTAGCTGCATATGTAACAGAGGATGGCCTAGTCGGCCATCAATAGGAGGA  144

seq1  GAGGCCCCTTGGTCTTGCAAA  170
      |||| ||||||||||||||||
seq2  GAGG-CCCTTGGTCTTGCAAA  164

seq1: chr1_43565518_43566649
seq2: B6Ng01-148L19.g_71_1197

seq1  GAATTCATTTTTAAATCAAAATTTATGAACTTGCCTTGTAACACATCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTAAATCAAAATTTATGAACTTGCCTTGTAACACATCATG  50

seq1  ATAGTCCTGCTTGAATTATCACTTCCTATTTGAGTAAAATAGAATTCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTGCTTGAATTATCACTTCCTATTTGAGTAAAATAGAATTCGTT  100

seq1  TTTTCTGTGCGGCTTTTACCATTTTGGGGACATAATCATCCTAGGGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGCGGCTTTTACCATTTTGGGGACATAATCATCCTAGGGATGA  150

seq1  ATTAATAGATCTCCTCCAAGTGAGCTGCCAGGACAGATGCCCTCTGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGATCTCCTCCAAGTGAGCTGCCAGGACAGATGCCCTCTGGGTT  200

seq1  TGAAATGATTAAAGATGCCAATGAACTCTCAGGGGAATCTGCAGAGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATTAAAGATGCCAATGAACTCTCAGGGGAATCTGCAGAGTGCA  250

seq1  CCAGAGTTCCCTTGAAAATGCCAGAGGAAACCAGAAGTGTTTGTCCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTCCCTTGAAAATGCCAGAGGAAACCAGAAGTGTTTGTCCAAGT  300

seq1  GTGTGCACAGTGACTGCACTGCCAATTCCACAAGCAGCTCGGAGTGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACAGTGACTGCACTGCCAATTCCACAAGCAGCTCGGAGTGTGGG  350

seq1  CACCTGTGTTAGCTGCTTGCCTCTTAACTACCTTGTAGCTTTGAGGTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGTTAGCTGCTTGCCTCTTAACTACCTTGTAGCTTTGAGGTTCG  400

seq1  AGTCTCAGATTTCCCGGTATGGGCAGGTGAATGCTTTTAGCCTTAGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGATTTCCCGGTATGGGCAGGTGAATGCTTTTAGCCTTAGGATT  450

seq1  GGGGATTCGGTTGGTGGCACCTGGGCACATGGCAATGCAAGAGACTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTCGGTTGGTGGCACCTGGGCACATGGCAATGCAAGAGACTATCA  500

seq1  GTTGTAGATAAGGCTCTGTGTGGCCCTCTTCCTATGAACTTGCCTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGATAAGGCTCTGTGTGGCCCTCTTCCTATGAACTTGCCTCTGCT  550

seq1  GCCTCTGGAAGCTTTCCTACCGTTTGCGGCAGTGTGTAGTAGTAGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGAAGCTTTCCTACCGTTTGCGGCAGTGTGTAGTAGTAGAGAAG  600

seq1  AGGGCTGGTGATACTTGGGAGCCTTTACCCCGTTAAGATTTCTTTACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGTGATACTTGGGAGCCTTTACCCCGTTAAGATTTCTTTACCTG  650

seq1  CTACTCGTGCAGTATGAATGTGCCTGTGGGGTGTGTGTGTTGCTGCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCGTGCAGTATGAATGTGCCTGTGGGGTGTGTGTGTTGCTGCCTGT  700

seq1  GAGAGCAGGTGTCTAAGCCCAGAAGAGGATATGGAGTCTCCTAGGAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGTGTCTAAGCCCAGAAGAGGATATGGAGTCTCCTAGGAGTTA  750

seq1  CAGTTACAAGCAGTTGTGAGCCTCCAATATGGGTGCTGGG-AACCAAACT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGTTACAAGCAGTTGTGAGCCTCCAATATGGGTGCTGGGAAACCAAACT  800

seq1  CTGGTCCTCTGCAAGAGCAGTAAACACTTTTAACTGCTGGGCACCAGTG-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGTCCTCTGCAAGAGCAGTAAACACTTTTAACTGCTGGGCACCAGTGT  850

seq1  TCTTTTTTCGTTTTTCTCTTTTTCTTTTCTTTTTGGGATGGCTAATTGAG  898
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TCTTTTTTCGTTTTTCTCTTTTTTCTTTCTTTTTGGGATGGCTAATTGAG  900

seq1  CTCAAACAAGCAAGCGCACTTAATATGTGTTCCTTTTAATTTCTCTGCAG  948
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  CTCAAACAAGCAAGCGCACTTAATATGTGTTCCTTTTA--TTCTCTGCAG  948

seq1  ATCCCACGGGTTCC-TCTCCTATAGTGTCATCCCAGCTGGCTTAAGAGCT  997
      |||||||||||||| |||||||||||||||||||||||||| || |||||
seq2  ATCCCACGGGTTCCTTCTCCTATAGTGTCATCCCAGCTGGC-TAGGAGCT  997

seq1  T-GGACGATCACTATAGC-TCTGTCACCTTCAAGGTGTCCTCAGACAGCA  1045
      | |||||||||||||||| |||| |||| |||||||||||||||||||||
seq2  TGGGACGATCACTATAGCTTCTG-CACC-TCAAGGTGTCCTCAGACAGCA  1045

seq1  GAAAACCTCATCTTTTTGAAGAGTGCTACAATTTTTCCAGTCACCTCTTG  1095
      ||||  ||||||||||||||  ||||||||| ||||||||||||||| ||
seq2  GAAA--CTCATCTTTTTGAAAGGTGCTACAA-TTTTCCAGTCACCTC-TG  1091

seq1  TAACTGCGTGCCAAAGGTAAGCCTATACATTTCTGCA  1132
      |||||||||||| |  ||||| ||||||||| |||||
seq2  TAACTGCGTGCCCAGAGTAAG-CTATACATTCCTGCA  1127