BAC Information

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BAC

Clone NameB6Ng01-149D15
Chromosome1 (Build37)
Map Location 6,973,254 - 7,126,524
singlet/doubletdoublet
Overlap geneLOC100039347, LOC435608, Pcmtd1
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027
Downstream geneLOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149D15.bB6Ng01-149D15.g
ACCDH945623DH945624
length1,1381,121
definitionDH945623|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D15, 5' end.DH945624|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,973,254 - 6,974,411)(7,125,397 - 7,126,524)
sequence
gaattcatcactttctgcttcttgaccttggacgcaatgtgacgagttgt
ctcaagcttttgtctctatgacttctcctaccctgaactatgagacaaaa
caaatacttcctcccttaggttgcttttgtcagagtttttcaccacagca
acaggaaaataaataaggtggccatccttcattacatattgagtttgagg
ccagcctggactacattatactatgaaaaccagtctcaaaaagaaaaaaa
aaaggagagagagagagagacaaagtatttaattaaaatagaaggtttta
tggttaagaaataagtttaccttcatgaaatataataattttttaaaata
tgattcactatgtgttgtaaaacttacaaatcttggaggtagtggtagtg
cacacctttaatcctaacacctgcgaggcagaggtaggcagatcgctgta
aattcaaggccagcctggtatacagacctcatgaaactaaaaagcttctg
taaggcgaaggacactgtcaataagacaaaatggaagcctacaaattttt
acctactctattatctgtcagagggctaacttccaagatatataaagaac
ttaagagactagacagcagatctacacccctgaactgaggccaattcaga
acccactgtgcatgggtctccccaggagagacctatattcctaggaatac
tcttaaccctgggctcagaggtgagatagccactttctctccaaaaactg
tatggagcagagctggccaggagtgtgtggaacaaaggatccttctcatc
cactgccacggacaggcctcagttgggcctctctcaatccatggacatgg
aggtggtgagaaatgacaaacaaatacaaacacaagggagtgtggtgtat
gaatgtattttctcaaagcaagcaccagtcttatatatggagaaaaacag
aaaggctaggtgatacatctgtcaaggtacactgggtcttacacaaacaa
agaaaatgcatacataaaaagatggcgggagcaggccgtgtttacactga
gataggacacccttaattagatcagctaaaccagggagcaggtgatgctc
tgaaccatgctatcaatgtaaacccatggtcctattta

gaattctagatcattgatgatcacagagctgggaagattgttgtgaacct
cacaggaaggttgaacaagtgtggaattataagccccagatttgatattc
aactcaaagacctagagaaatggcagaacaacctgctcctatcactgcag
tttggcttcatcgtgctgacaaccttggctggcatcatggaccatgaaga
ggcaagatgaaaacatacaggagggaaaatcctgggattctttttttaaa
tgtaaatcataaataaaaagccttcgtggactgtgaaaaaaaaaagattt
gggaagcttattttttcttctcttcaacttctctctacacaggaacaaag
acagtgctgagagtcctttgtaaaaatcctgagctctgggaagacagtta
ggtgagcagaacataatttattttgactttaaaaccaaaggtgatgttct
aatgcaacatattaggacttgaagcaacctaactcttcaagtgtggagca
aaattaaatttatggataactgcttcaagtataccttaactttccgaaga
aaactcttaactgcccctctctgaacaagaatgctctaattctcgcctat
cctctatactcatttctgaatgagacaagaacccccattccttcattggg
gaccttgtgctccgtccaatggatgattgtgagcatccacttctgtatta
gccaggccctggcagagccccttaggagacagctatcaggctcctgttag
caagctcttgttggcatctgccatagtatctgggtttggtggttgtttat
aggatggatccccaagtggggcagtcgctagatggtcattccttcagctt
ctgctctgaactttgtctcttgtaactccttccatgagttccccaattta
ggctacagaaagtaataaaccaaggagatgatgggtctgagccatagaag
gaacatcatatgacttaccagtacccctcccccccccagaactctttgga
actaaaccaccaatcaagaaaatacatggtggaacttgtggcttctagct
gattttgtacctaagaagggcctatcggtcatccatggggaggaaggcct
agtcctgaaggtttctagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6973254_6974411
seq2: B6Ng01-149D15.b_50_1187

seq1  GAATTCATCACTTTCTGCTTCTTGACCTTGGACGCAATGTGACGAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTTTCTGCTTCTTGACCTTGGACGCAATGTGACGAGTTGT  50

seq1  CTCAAGCTTTTGTCTCTATGACTTCTCCTACCCTGAACTATGAGACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCTTTTGTCTCTATGACTTCTCCTACCCTGAACTATGAGACAAAA  100

seq1  CAAATACTTCCTCCCTTAGGTTGCTTTTGTCAGAGTTTTTCACCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTCCTCCCTTAGGTTGCTTTTGTCAGAGTTTTTCACCACAGCA  150

seq1  ACAGGAAAATAAATAAGGTGGCCATCCTTCATTACATATTGAGTTTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAATAAATAAGGTGGCCATCCTTCATTACATATTGAGTTTGAGG  200

seq1  CCAGCCTGGACTACATTATACTATGAAAACCAGTCTCAAAAAGAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGACTACATTATACTATGAAAACCAGTCTCAAAAAGAAAAAAA  250

seq1  AAAGGAGAGAGAGAGAGAGACAAAGTATTTAATTAAAATAGAAGGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGAGAGAGAGAGACAAAGTATTTAATTAAAATAGAAGGTTTTA  300

seq1  TGGTTAAGAAATAAGTTTACCTTCATGAAATATAATAATTTTTTAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGAAATAAGTTTACCTTCATGAAATATAATAATTTTTTAAAATA  350

seq1  TGATTCACTATGTGTTGTAAAACTTACAAATCTTGGAGGTAGTGGTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACTATGTGTTGTAAAACTTACAAATCTTGGAGGTAGTGGTAGTG  400

seq1  CACACCTTTAATCCTAACACCTGCGAGGCAGAGGTAGGCAGATCGCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTAATCCTAACACCTGCGAGGCAGAGGTAGGCAGATCGCTGTA  450

seq1  AATTCAAGGCCAGCCTGGTATACAGACCTCATGAAACTAAAAAGCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGGCCAGCCTGGTATACAGACCTCATGAAACTAAAAAGCTTCTG  500

seq1  TAAGGCGAAGGACACTGTCAATAAGACAAAATGGAAGCCTACAAATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCGAAGGACACTGTCAATAAGACAAAATGGAAGCCTACAAATTTTT  550

seq1  ACCTACTCTATTATCTGTCAGAGGGCTAACTTCCAAGATATATAAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTCTATTATCTGTCAGAGGGCTAACTTCCAAGATATATAAAGAAC  600

seq1  TTAAGAGACTAGACAGCAGATCTACACCCCTGAACTGAGGCCAATTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGACTAGACAGCAGATCTACACCCCTGAACTGAGGCCAATTCAGA  650

seq1  ACCCACTGTGCATGGGTCTCCCCAGGAGAGACCTATATTCCTAGGAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGTGCATGGGTCTCCCCAGGAGAGACCTATATTCCTAGGAATAC  700

seq1  TCTTAACCCTGGGCTCAGAGGTGAGATAGCCACTTTCTCTCCAAAAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCCTGGGCTCAGAGGTGAGATAGCCACTTTCTCTCCAAAAACTG  750

seq1  TATGGAGCAGAGCTGGCCAGGAGTGTGTGGAACAAAGGATCCTTCTCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCAGAGCTGGCCAGGAGTGTGTGGAACAAAGGATCCTTCTCATC  800

seq1  CACTGCCACGGACAGGCCTCAGTT-GGCCTCTCTCAATCCATGGACATGG  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACTGCCACGGACAGGCCTCAGTTGGGCCTCTCTCAATCCATGGACATGG  850

seq1  AGGTGGTGAGAAATGACAAACAAATACAAACACAAGGGAGTGTGGTGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGAGAAATGACAAACAAATACAAACACAAGGGAGTGTGGTGTAT  900

seq1  GAATGTATTTTCTCAAAGCAAGCACCAGTCTTATAATATGGAAGAAAAAC  949
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  GAATGTATTTTCTCAAAGCAAGCACCAGTCTTAT-ATATGG-AGAAAAAC  948

seq1  AAGAAGGCTAGGTGAATACATCTGTCAAGGTACACTGGTTCTTAACACAA  999
      |  ||||||||||| ||||||||||||||||||||||| |||| |||| |
seq2  AGAAAGGCTAGGTG-ATACATCTGTCAAGGTACACTGGGTCTT-ACAC-A  995

seq1  AACAAAGAAAATGCATACATAAAAAGATGGCGGGAGCCAGGCCGTGTTTA  1049
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACAAAGAAAATGCATACATAAAAAGATGGCGGGAG-CAGGCCGTGTTTA  1044

seq1  CAACTGAGAATAGGAACAACCCTTAATTAAGATCAGCTAAACACAGGAGC  1099
      | |||||| ||||||   |||||||||| ||||||||||||| ||||   
seq2  C-ACTGAG-ATAGGA--CACCCTTAATT-AGATCAGCTAAAC-CAGGGAG  1088

seq1  CAGGTGAATGCTCTGACACAATGCTAATCCATTGTTAAACCCCAGGGGTC  1149
      |||||| ||||||||| || ||||| ||| ||   |||||||    ||||
seq2  CAGGTG-ATGCTCTGA-ACCATGCT-ATCAAT--GTAAACCC--ATGGTC  1131

seq1  CTTTATTTA  1158
      |  ||||||
seq2  C--TATTTA  1138


seq1: chr1_7125397_7126524
seq2: B6Ng01-149D15.g_67_1187 (reverse)

seq1  GGGCATAGAAACTTTACAGGACCTAGGGCCTTTCCTCCCATTGATGACCG  50
      |||| ||||||| || ||||| ||| |||||| |  ||||| ||||||||
seq2  GGGC-TAGAAACCTT-CAGGA-CTA-GGCCTTCCTCCCCATGGATGACCG  46

seq1  ACTAGGCCATCCTCTGCTACATATACAGCTAG-AGCCACAAGTTCCACCA  99
      | |||||| | ||  | |||| |  ||||||| |||||||||||||||||
seq2  A-TAGGCCCTTCTTAGGTACAAAATCAGCTAGAAGCCACAAGTTCCACCA  95

seq1  TGTGTTTTCTTTGATTGGTGGTTTAGTTCCAAGGAGCTCTGGGGGGGGGG  149
      ||| ||||| |||||||||||||||||||||| ||| |||||||||||| 
seq2  TGTATTTTC-TTGATTGGTGGTTTAGTTCCAAAGAGTTCTGGGGGGGGGA  144

seq1  GGGGTACTGGTTAGTTCATATTGATGTTCCTTCTATGGCTTCAGACCCCT  199
      ||||||||||| || ||||| |||||||||||||||||| ||||| ||| 
seq2  GGGGTACTGGTAAG-TCATA-TGATGTTCCTTCTATGGC-TCAGA-CCCA  190

seq1  TCATCTCCTTGGTTACTTACTTTCTGTAGCCTACATTGGGG-ACTCATGG  248
      ||||||||||||||  ||||||||||||||||| ||||||| ||||||||
seq2  TCATCTCCTTGGTTTATTACTTTCTGTAGCCTAAATTGGGGAACTCATGG  240

seq1  AAGGAGTTAC-AGAGACAAAGTTCAGAGCAGAAGCTGAAGGAATGACCAT  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTACAAGAGACAAAGTTCAGAGCAGAAGCTGAAGGAATGACCAT  290

seq1  CTAGCGACTGCCCCACTTGGGGATCCATCCTATAAACAACCACCAAACCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGACTGCCCCACTTGGGGATCCATCCTATAAACAACCACCAAACCC  340

seq1  AGATACTATGGCAGATGCCAACAAGAGCTTGCTAACAGGAGCCTGATAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTATGGCAGATGCCAACAAGAGCTTGCTAACAGGAGCCTGATAGC  390

seq1  TGTCTCCTAAGGGGCTCTGCCAGGGCCTGGCTAATACAGAAGTGGATGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTAAGGGGCTCTGCCAGGGCCTGGCTAATACAGAAGTGGATGCT  440

seq1  CACAATCATCCATTGGACGGAGCACAAGGTCCCCAATGAAGGAATGGGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCATCCATTGGACGGAGCACAAGGTCCCCAATGAAGGAATGGGGG  490

seq1  TTCTTGTCTCATTCAGAAATGAGTATAGAGGATAGGCGAGAATTAGAGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCTCATTCAGAAATGAGTATAGAGGATAGGCGAGAATTAGAGCA  540

seq1  TTCTTGTTCAGAGAGGGGCAGTTAAGAGTTTTCTTCGGAAAGTTAAGGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTCAGAGAGGGGCAGTTAAGAGTTTTCTTCGGAAAGTTAAGGTA  590

seq1  TACTTGAAGCAGTTATCCATAAATTTAATTTTGCTCCACACTTGAAGAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAGCAGTTATCCATAAATTTAATTTTGCTCCACACTTGAAGAGT  640

seq1  TAGGTTGCTTCAAGTCCTAATATGTTGCATTAGAACATCACCTTTGGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGCTTCAAGTCCTAATATGTTGCATTAGAACATCACCTTTGGTTT  690

seq1  TAAAGTCAAAATAAATTATGTTCTGCTCACCTAACTGTCTTCCCAGAGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAAAATAAATTATGTTCTGCTCACCTAACTGTCTTCCCAGAGCT  740

seq1  CAGGATTTTTACAAAGGACTCTCAGCACTGTCTTTGTTCCTGTGTAGAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTTTACAAAGGACTCTCAGCACTGTCTTTGTTCCTGTGTAGAGA  790

seq1  GAAGTTGAAGAGAAGAAAAAATAAGCTTCCCAAATCTTTTTTTTTTCACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAAGAGAAGAAAAAATAAGCTTCCCAAATCTTTTTTTTTTCACA  840

seq1  GTCCACGAAGGCTTTTTATTTATGATTTACATTTAAAAAAAGAATCCCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGAAGGCTTTTTATTTATGATTTACATTTAAAAAAAGAATCCCAG  890

seq1  GATTTTCCCTCCTGTATGTTTTCATCTTGCCTCTTCATGGTCCATGATGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCCCTCCTGTATGTTTTCATCTTGCCTCTTCATGGTCCATGATGC  940

seq1  CAGCCAAGGTTGTCAGCACGATGAAGCCAAACTGCAGTGATAGGAGCAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGGTTGTCAGCACGATGAAGCCAAACTGCAGTGATAGGAGCAGG  990

seq1  TTGTTCTGCCATTTCTCTAGGTCTTTGAGTTGAATATCAAATCTGGGGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGCCATTTCTCTAGGTCTTTGAGTTGAATATCAAATCTGGGGCT  1040

seq1  TATAATTCCACACTTGTTCAACCTTCCTGTGAGGTTCACAACAATCTTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCCACACTTGTTCAACCTTCCTGTGAGGTTCACAACAATCTTCC  1090

seq1  CAGCTCTGTGATCATCAATGATCTAGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  CAGCTCTGTGATCATCAATGATCTAGAATTC  1121


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