BAC Information

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BAC

Clone NameB6Ng01-149M06
Chromosome1 (Build37)8 (Build37)
Map Location 111,649,386 - 111,649,882112,833,969 - 112,835,132
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149M06.bB6Ng01-149M06.g
ACCDH946017DH946018
length1,0201,146
definitionDH946017|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M06, 5' end.DH946018|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,649,386 - 111,649,882)(112,833,969 - 112,835,132)
sequence
gaattcaaggcccatacctaaacataataaaagcaatctatagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctacctattcaatatag
tacttgaagtcctagccagagcaattagacaacaaaaggaggtcaagggg
atacaaattggaaaggaagaagtcaaaatatcactatttgcagatgatat
gatagtatatataaatgaccctaaaaattccaccagagaactcctaaacc
tgataaatagcttcaatgaagaagctggatataaaattaactcaaacaaa
tcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattag
ggaaacaacacccttcacaatagtcacaaataatataaaataccttagtg
tgactctaactaaggaagtaaaagatctgtatgttaagaacttcaagtct
ctgaagaaagaaaccaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggattaatatagtgaaaatggctatcttgtcgaaag
caatctacagattcaatgcaatccccatcaaaattccaattcaaaatttc
aaggaattagaaagggcaatttgcaaattcatctggaataacaaaaaaac
ctaggatagcaaaaaaatcttctcaatgataaaagaatctctggtggaat
caccatgcctgacctcaagctgtactacagagcaattgtgataaaaactg
catggtactggtatagcgacagacaggtagaccaatggaatagaattgaa
gacccggaaatgaacccacacacctatggtcacttgatctttgacaggga
gctaaaaccatccagtggaagaaagacagcattttcaacaaatggtgctg
gctcaactggcagtatcatgtagaagatgcgaactgatccattctatctc
catgtactaggtcaagtcta
gaattctatgccagaggctttccttgacacctggcagtaacaggagaagg
gttgtgtggaagctttgagcacagttgaatgcagaaataaccagatgctg
tgtgaagggagagcatcaatgcagccctaaactccagggagaaggcaaat
aggaatggaggaatatggacgcagagagctgagccacaagaaaaatgagg
aaataagtctgtgcaggaaccaaggcaagcaggaaggcttggaggtatat
tcagcgcagtagctcattaaaggactcagtgatgcctttcagagatcaat
aaggtgattgaatgccagcaaagccactctgtggacaatggtacatggcc
tgggttagcgcctttgtctctggctgcagtgtcattagcaagagaagctc
aggacagaaactcagggcttggtggagagatgagaaagaactgaaggtga
ccagggtcacattgccgggcctcgggaagagtcacatgatatagacatta
ggacttttcacatggggctgccaacaagtcgttttcttatgtagaattcc
cctttcccctcttactacttgtcttagttagggttttactgctgtgaaca
gacaccatgaccaaagcaagtcttataaaaaaaacaacatttaattgggg
ctggcttacaggttcagaagttcagtccattatcatcaaggtgggagcat
gcagtatccaggcaggcatggtgcaggaggagctgagagttctatgtctt
catccaaaggctgctagtggaagattgacttccaggcaactagggtgaag
atcttatatccacacccacagtgacacacccattccaacgaggtcacacc
tattccaacaaggccacaccttcagatggtgcctcttcctggtccaagga
tatacaaaccatcacactactgtttacactgttggagttttatcagctag
taaggatgaagaggtactaggctaaagttcctttgtattctgcttgaccc
tagacatgaagtgaagatgaaatctacgcatccccctacccattttgagt
cataacaaatactctttagcagttagtcccagtactcatgattctgactc
aaagaacgtgtgattgaggcatattgagtacatagaatctgtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111649386_111649882
seq2: B6Ng01-149M06.b_159_655 (reverse)

seq1  TCTGTACATTGCTTTTGGCAAGATAGCCATTTTTACAATATTGATCCTGC  50
      |||||| |||||||| | ||||||||||||||| || ||||| |||||||
seq2  TCTGTAGATTGCTTTCGACAAGATAGCCATTTTCACTATATTAATCCTGC  50

seq1  CAATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCCTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||| ||  ||
seq2  CAATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTGGTT  100

seq1  TCTTTCTTCAGAGATTTGAAGTTTTTATCATACAGATCTTTCACTTCCTT  150
      |||||||||||||| |||||||| ||| ||||||||||||| ||||||||
seq2  TCTTTCTTCAGAGACTTGAAGTTCTTAACATACAGATCTTTTACTTCCTT  150

seq1  AGTTAGAGTCACGCCAAGATATTTTATATTATTTGTGACTATTGAGAAGG  200
      |||||||||||| | ||| ||||||||||||||||||||||||| |||||
seq2  AGTTAGAGTCACACTAAGGTATTTTATATTATTTGTGACTATTGTGAAGG  200

seq1  GTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATTCTCTGTATAGAGA  250
      |||||||||||||||||||||||||||||||||||| || ||| || |||
seq2  GTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATCCTTTGTGTACAGA  250

seq1  AAGGCCATTGACTTGTTTGAGTTTATTTTATATCCAGCTACTTCACCGAA  300
      ||||||||||| ||||||||||| ||||||||||||||| |||||  |||
seq2  AAGGCCATTGATTTGTTTGAGTTAATTTTATATCCAGCTTCTTCATTGAA  300

seq1  GCTGTTTATCAGGTTTAGGAGTTCTCTGGTAGAATTTTTAGGGTCACTTA  350
      ||| |||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GCTATTTATCAGGTTTAGGAGTTCTCTGGTGGAATTTTTAGGGTCATTTA  350

seq1  TATATACTATCATATCATCTGCAAAAAGTGATATTTTGACTTCCTCTTTT  400
      ||||||||||||||||||||||||| ||||||||||||||||| || |||
seq2  TATATACTATCATATCATCTGCAAATAGTGATATTTTGACTTCTTCCTTT  400

seq1  CCAATTTGTATCCCCTTGATCTCCTTTTGTTGTCGAATTGCTCTGGCTAA  450
      ||||||||||||||||||| |||||||||||||| |||||||||||||| 
seq2  CCAATTTGTATCCCCTTGACCTCCTTTTGTTGTCTAATTGCTCTGGCTAG  450

seq1  TACTTCAAGTACTATGTTGAAAAGGTAGGGAGAAAGTGGGCAGCCTT  497
       |||||||||||||| ||||| |||||||||||||||||||||||||
seq2  GACTTCAAGTACTATATTGAATAGGTAGGGAGAAAGTGGGCAGCCTT  497

seq1: chr8_112833969_112835132
seq2: B6Ng01-149M06.g_68_1213

seq1  GAATTCTATGCCAGAGGCTTTCCTTGACACCTGGCAGTAACAGGAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCCAGAGGCTTTCCTTGACACCTGGCAGTAACAGGAGAAGG  50

seq1  GTTGTGTGGAAGCTTTGAGCACAGTTGAATGCAGAAATAACCAGATGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGGAAGCTTTGAGCACAGTTGAATGCAGAAATAACCAGATGCTG  100

seq1  TGTGAAGGGAGAGCATCAATGCAGCCCTAAACTCCAGGGAGAAGGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGGAGAGCATCAATGCAGCCCTAAACTCCAGGGAGAAGGCAAAT  150

seq1  AGGAATGGAGGAATATGGACGCAGAGAGCTGAGCCACAAGAAAAATGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAGGAATATGGACGCAGAGAGCTGAGCCACAAGAAAAATGAGG  200

seq1  AAATAAGTCTGTGCAGGAACCAAGGCAAGCAGGAAGGCTTGGAGGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTCTGTGCAGGAACCAAGGCAAGCAGGAAGGCTTGGAGGTATAT  250

seq1  TCAGCGCAGTAGCTCATTAAAGGACTCAGTGATGCCTTTCAGAGATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCAGTAGCTCATTAAAGGACTCAGTGATGCCTTTCAGAGATCAAT  300

seq1  AAGGTGATTGAATGCCAGCAAAGCCACTCTGTGGACAATGGTACATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATTGAATGCCAGCAAAGCCACTCTGTGGACAATGGTACATGGCC  350

seq1  TGGGTTAGCGCCTTTGTCTCTGGCTGCAGTGTCATTAGCAAGAGAAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAGCGCCTTTGTCTCTGGCTGCAGTGTCATTAGCAAGAGAAGCTC  400

seq1  AGGACAGAAACTCAGGGCTTGGTGGAGAGATGAGAAAGAACTGAAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAAACTCAGGGCTTGGTGGAGAGATGAGAAAGAACTGAAGGTGA  450

seq1  CCAGGGTCACATTGCCGGGCCTCGGGAAGAGTCACATGATATAGACATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCACATTGCCGGGCCTCGGGAAGAGTCACATGATATAGACATTA  500

seq1  GGACTTTTCACATGGGGCTGCCAACAAGTCGTTTTCTTATGTAGAATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTCACATGGGGCTGCCAACAAGTCGTTTTCTTATGTAGAATTCC  550

seq1  CCTTTCCCCTCTTACTACTTGTCTTAGTTAGGGTTTTACTGCTGTGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTCTTACTACTTGTCTTAGTTAGGGTTTTACTGCTGTGAACA  600

seq1  GACACCATGACCAAAGCAAGTCTTATAAAAAAAACAACATTTAATTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATGACCAAAGCAAGTCTTATAAAAAAAACAACATTTAATTGGGG  650

seq1  CTGGCTTACAGGTTCAGAAGTTCAGTCCATTATCATCAAGGTGGGAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTACAGGTTCAGAAGTTCAGTCCATTATCATCAAGGTGGGAGCAT  700

seq1  GCAGTATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATGTCTT  750

seq1  CATCCAAAGGCTGCTAGTGGAAGATTGACTTCCAGGCAACTAGGGTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAGGCTGCTAGTGGAAGATTGACTTCCAGGCAACTAGGGTGAAG  800

seq1  ATCTTATATCCACACCCACAGTGACACACCCATTCCAACGAGGTCACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATATCCACACCCACAGTGACACACCCATTCCAACGAGGTCACACC  850

seq1  TATTCCAACAAGGCCACACCTTCAGATGGTGCCTCTTCCTGGTCCAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAACAAGGCCACACCTTCAGATGGTGCCTCTTCCTGGTCCAAGGA  900

seq1  TATACAAACCATCACACTACTGTTTTACACTGTTTGGAGTTTTATCAGGC  950
      |||||||||||||||||||||| ||||||||| |||||||||||||| ||
seq2  TATACAAACCATCACACTACTG-TTTACACTG-TTGGAGTTTTATCA-GC  947

seq1  TAGTAAGGATGAAGAGGTACTAGGCTAAAGGTCCCTTGGTAATTCTGCTT  1000
      |||||||||||||||||||||||||||||| ||| |||   |||||||||
seq2  TAGTAAGGATGAAGAGGTACTAGGCTAAAGTTCCTTTG--TATTCTGCTT  995

seq1  GACCCTAGACATGAAGTGGAAGATGAAATCTACGCATTCCCCCTACCCCA  1050
      ||||||||||||||||| |||||||||||||||||| |||||||| ||||
seq2  GACCCTAGACATGAAGT-GAAGATGAAATCTACGCA-TCCCCCTA-CCCA  1042

seq1  TTTTGAGTCATTAACAAATACTCTTTAGCAGGTAAGGTCCCAGTACTCAT  1100
      |||||||||| |||||||||||||||||||| ||  ||||||||||||||
seq2  TTTTGAGTCA-TAACAAATACTCTTTAGCAGTTA--GTCCCAGTACTCAT  1089

seq1  GAGTCTGACCTCAGAGGACCGTGTGATTGAGGCCATTTGAGTTACATAGG  1150
      || ||||| |||| | || ||||||||||||||   ||||| ||||||| 
seq2  GATTCTGA-CTCA-AAGAACGTGTGATTGAGGCATATTGAG-TACATAG-  1135

seq1  AAAATCTTGTCTCT  1164
        |||| |||||||
seq2  --AATC-TGTCTCT  1146