BAC Information

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BAC

Clone NameB6Ng01-150A03
Chromosome1 (Build37)
Map Location 59,699,317 - 59,839,112
singlet/doubletdoublet
Overlap geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150A03.bB6Ng01-150A03.g
ACCDH946196DH946197
length1,1421,149
definitionDH946196|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A03, 5' end.DH946197|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,699,317 - 59,700,467)(59,837,957 - 59,839,112)
sequence
gaattcattggaactccctaaaaaaaggaaaaagaaagtttgtataaaaa
tcttaggttattagtaactatgataaaaccataaaagaaaaagaaacagc
aggaaacatgaaaggctttaggaaatctcatgttccaagtgctactttat
agacagtcatgatgttctttgcagagatactgaaggttggttatctccac
atcttcattttacaactagggaacgtgaggcctgaagataagctaagaat
ttcagctcaaaataattgataagcctattttctcaaccacctctgtgttc
attttctccttatgtctgagctagcataaaagaaaataaggacctgaata
tgctttctagcttctaactatacaagcaaaactggttttaaacattaaat
tcaaagaatttggtaatgcaaaagagatagctagttaaggcacagtaata
tgtgtgtatgcacacacacataccaggttaagtctaaatgctaccaaaga
tgtttatatttgttaaccattttaatatgacagctaaaggggagatgatt
ctttaaaagaaagtaactttacaaggaagtatgaatcaagaatgatctat
ttaagggctaaagaaatagctcagtggttaagaggattggctgttctttc
agaggactcaggttcaattcccagcactcacatggcagctatcttaatcc
cagtcctgagggaaatccaatgcctacttccagcatctgagggcattatg
gacataatgcacagacatacaggcaggtaaaacaccatgagtaaaatcta
attaaaacaacaacaacaataaaactaaaacttttatctgtggggtttaa
acactgtacctgaaacaaaaccacaaagaaattaaaatataccaagtgtg
atgatacccagcacccaggaggcaagggtaaaaggatctcttgagttcca
ggctagcttggtcgacatagtgagtccaggacagctagggctatgtagaa
agactctgtctcaaaacaaacaattcaccttggtatctcaaggaatgatt
taacttgcttttagtttattgaggcaggattccagatttcatacaactca
gttggcctcaatttcttactgagtagaaaaataacccttgac
actgtggaccttttctcaaaaaattaaaaattaaaaaattaaaaaagtaa
tagtcacaggactctccagtactaaaactacatataaaatttatgaactc
ataaagctataaaagctataaaaaggctaaacaagataatctctttatgt
agagatgatagaagatgatgtattagatcgttaaagttcaacttactacc
aatcaaagacaatcttttttactaatgatgaggatggaacatagaatcat
gttctctactctatagcccccccaaaaaaacaaaagcaacccatatcttt
tatctttaatttttaagtgtttgagtgttttgcctccatttatgttagta
tacgatgcacatgactgttgccgttggaggccagaaggcactagatcccc
tggaactggattcacagatggttataaggtctcaggtagggctgggaata
gaacccaatccaatcctttgttgagaactgccagtgctcttactcactaa
aacatctctctagcccccaaccccgcattttgcttttaaaagaatgactt
agacaatagtgatagtgcatgactctgtagggcagaggcaggcaaatctc
tgtgcaatcaaggcctgcctgatccacatagtgagttccaggctagccag
aggtacataaaagagtgaacctgtcacaaaaaagaaaacaaacagaaaaa
ggaacttctcagaaatctaaatatatggacaaaacaatgattcctagaaa
gtagatgcatgaatggggaaaagattagcattaaagctaaaataagttca
taaattaacattttataacatttcatcaagctaacacatgagctttggcc
aaaaacaactcaacagccatatccatataaaactatgcttcaaacgttaa
aggaagaacttcatttgactgttttaagcttgctttctactgctttgggg
tgtactcactaaataaaaagttactctcatactagactggtccctgggat
tctaatcactatgaacacatggaaacatataacatatcctcccctaactg
atgtcatcatcacactctactctaactgtttgttttcccaactggagctt
gaatggtcaaggaaggtttttattcattcaacatttaaatatcaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59699317_59700467
seq2: B6Ng01-150A03.b_42_1183

seq1  GAATTCATTGGAACTCCCTAAAAAAAGGAAAAAGAAAGTTTGTATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGAACTCCCTAAAAAAAGGAAAAAGAAAGTTTGTATAAAAA  50

seq1  TCTTAGGTTATTAGTAACTATGATAAAACCATAAAAGAAAAAGAAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTTATTAGTAACTATGATAAAACCATAAAAGAAAAAGAAACAGC  100

seq1  AGGAAACATGAAAGGCTTTAGGAAATCTCATGTTCCAAGTGCTACTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATGAAAGGCTTTAGGAAATCTCATGTTCCAAGTGCTACTTTAT  150

seq1  AGACAGTCATGATGTTCTTTGCAGAGATACTGAAGGTTGGTTATCTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCATGATGTTCTTTGCAGAGATACTGAAGGTTGGTTATCTCCAC  200

seq1  ATCTTCATTTTACAACTAGGGAACGTGAGGCCTGAAGATAAGCTAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATTTTACAACTAGGGAACGTGAGGCCTGAAGATAAGCTAAGAAT  250

seq1  TTCAGCTCAAAATAATTGATAAGCCTATTTTCTCAACCACCTCTGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCAAAATAATTGATAAGCCTATTTTCTCAACCACCTCTGTGTTC  300

seq1  ATTTTCTCCTTATGTCTGAGCTAGCATAAAAGAAAATAAGGACCTGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTTATGTCTGAGCTAGCATAAAAGAAAATAAGGACCTGAATA  350

seq1  TGCTTTCTAGCTTCTAACTATACAAGCAAAACTGGTTTTAAACATTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAGCTTCTAACTATACAAGCAAAACTGGTTTTAAACATTAAAT  400

seq1  TCAAAGAATTTGGTAATGCAAAAGAGATAGCTAGTTAAGGCACAGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATTTGGTAATGCAAAAGAGATAGCTAGTTAAGGCACAGTAATA  450

seq1  TGTGTGTATGCACACACACATACCAGGTTAAGTCTAAATGCTACCAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGCACACACACATACCAGGTTAAGTCTAAATGCTACCAAAGA  500

seq1  TGTTTATATTTGTTAACCATTTTAATATGACAGCTAAAGGGGAGATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATTTGTTAACCATTTTAATATGACAGCTAAAGGGGAGATGATT  550

seq1  CTTTAAAAGAAAGTAACTTTACAAGGAAGTATGAATCAAGAATGATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGAAAGTAACTTTACAAGGAAGTATGAATCAAGAATGATCTAT  600

seq1  TTAAGGGCTAAAGAAATAGCTCAGTGGTTAAGAGGATTGGCTGTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCTAAAGAAATAGCTCAGTGGTTAAGAGGATTGGCTGTTCTTTC  650

seq1  AGAGGACTCAGGTTCAATTCCCAGCACTCACATGGCAGCTATCTTAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTCAGGTTCAATTCCCAGCACTCACATGGCAGCTATCTTAATCC  700

seq1  CAGTCCTGAGGGAAATCCAATGCCTACTTCCAGCATCTGAGGGCATTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGAGGGAAATCCAATGCCTACTTCCAGCATCTGAGGGCATTATG  750

seq1  GACATAATGCACAGACATACAGGCAGGTAAAACACCATGAGTAAAATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATGCACAGACATACAGGCAGGTAAAACACCATGAGTAAAATCTA  800

seq1  ATTAAAACAACAACAACAATAAAACTAAAACTTTTATCTGTGGGGTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACAACAACAACAATAAAACTAAAACTTTTATCTGTGGGGTTTAA  850

seq1  ACACTGTACCTGAAACAAAACCACAAAGAAATTAAAATATACCAAGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTACCTGAAACAAAACCACAAAGAAATTAAAATATACCAAGTGTG  900

seq1  ATGATACCCAGCACCCAGGAGGCAAGGGTAAAAGGATCTCTTGAGTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCCAGCACCCAGGAGGCAAGGGTAAAAGGATCTCTTGAGTTCCA  950

seq1  GGCTAGCTTGGTCGACATAGTGAGTTCCAGGACAGCTAGGGCTATGTAGA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCTAGCTTGGTCGACATAGTGAG-TCCAGGACAGCTAGGGCTATGTAGA  999

seq1  GAGACTCTGTCTCAAAACAAACAATTCAACCTTGGTTATCTCTATGTATT  1050
       |||||||||||||||||||||||||| ||||||| |||||| | | |  
seq2  AAGACTCTGTCTCAAAACAAACAATTC-ACCTTGG-TATCTCAAGGAA--  1045

seq1  GTTTTTTTAACTTGCTTTTAGTTTTATGAGGCAGGATTTCCAGGATTTCA  1100
        |  |||||||||||||||||||  |||||||||| ||||| |||||||
seq2  --TGATTTAACTTGCTTTTAGTTTATTGAGGCAGGA-TTCCA-GATTTCA  1091

seq1  TACAACTCAGGTTGGCCTCAAATTTCTTACTGAGTAG-AAGATAA-CCTT  1148
      ||||||||| ||||||||| ||||||||||||||||| || |||| ||||
seq2  TACAACTCA-GTTGGCCTC-AATTTCTTACTGAGTAGAAAAATAACCCTT  1139

seq1  GAC  1151
      |||
seq2  GAC  1142

seq1: chr1_59837957_59839112
seq2: B6Ng01-150A03.g_77_1225 (reverse)

seq1  TTTG-TAATATTTAAATGTTGATGGATATAAAACCTTTCCTTGACAATAC  49
      |||| | |||||||||||||||  || |||||| | ||||||||| || |
seq2  TTTGTTGATATTTAAATGTTGAATGA-ATAAAAACCTTCCTTGACCATTC  49

seq1  AAAGCTTCAGTTGTGGAAAAC-AACAGTTAGAGTAGGAGTGTGATGATGA  98
       ||||| |||||| ||||||| ||||||||||||| ||||||||||||||
seq2  -AAGCTCCAGTTG-GGAAAACAAACAGTTAGAGTA-GAGTGTGATGATGA  96

seq1  CATCAGTTAGGGGAGGATATGTTTATAATGTTTCCATGTGTTCATAGTGA  148
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  CATCAGTTAGGGGAGGATATG-TTAT-ATGTTTCCATGTGTTCATAGTGA  144

seq1  TTAGAATCCCAGGGGACCAGTCTAGTATGAAGAGTAACTTTTTATTTAGT  198
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTAGAATCCCA-GGGACCAGTCTAGTATG-AGAGTAACTTTTTATTTAGT  192

seq1  GAGTACA-CCCAAAGCAGTAAGAAAGCAAGCTTAAAACAGTCAAATGAAG  247
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGTACACCCCAAAGCAGT-AGAAAGCAAGCTTAAAACAGTCAAATGAAG  241

seq1  TTCTTCC-TTAACGTTTTGAAGCATAGTTTTATATGGATATGGCTGTTGA  296
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTTAACG-TTTGAAGCATAGTTTTATATGGATATGGCTGTTGA  290

seq1  GTTGTTTTTGGCCAAAGCTCATGTGTTAGCTTGATGAAATGTTATAAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTGTTTTTGGCCAAAGCTCATGTGTTAGCTTGATGAAATGTTAT-AAAA  339

seq1  TGTTAATTTATGAACTTATTTTAGCTTTAATGCTAATCTTTTCCCCATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTTATGAACTTATTTTAGCTTTAATGCTAATCTTTTCCCCATTC  389

seq1  ATGCATCTACTTTCTAGGAATCATTGTTTTGTCCATATATTTAGATTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTACTTTCTAGGAATCATTGTTTTGTCCATATATTTAGATTTCT  439

seq1  GAGAAGTTCCTTTTTCTGTTTGTTTTCTTTTTTGTGACAGGTTCACTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTCCTTTTTCTGTTTGTTTTCTTTTTTGTGACAGGTTCACTCTT  489

seq1  TTATGTACCTCTGGCTAGCCTGGAACTCACTATGTGGATCAGGCAGGCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACCTCTGGCTAGCCTGGAACTCACTATGTGGATCAGGCAGGCCT  539

seq1  TGATTGCACAGAGATTTGCCTGCCTCTGCCCTACAGAGTCATGCACTATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCACAGAGATTTGCCTGCCTCTGCCCTACAGAGTCATGCACTATC  589

seq1  ACTATTGTCTAAGTCATTCTTTTAAAAGCAAAATGCGGGGTTGGGGGCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTCTAAGTCATTCTTTTAAAAGCAAAATGCGGGGTTGGGGGCTA  639

seq1  GAGAGATGTTTTAGTGAGTAAGAGCACTGGCAGTTCTCAACAAAGGATTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTTTTAGTGAGTAAGAGCACTGGCAGTTCTCAACAAAGGATTG  689

seq1  GATTGGGTTCTATTCCCAGCCCTACCTGAGACCTTATAACCATCTGTGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGTTCTATTCCCAGCCCTACCTGAGACCTTATAACCATCTGTGAA  739

seq1  TCCAGTTCCAGGGGATCTAGTGCCTTCTGGCCTCCAACGGCAACAGTCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCCAGGGGATCTAGTGCCTTCTGGCCTCCAACGGCAACAGTCAT  789

seq1  GTGCATCGTATACTAACATAAATGGAGGCAAAACACTCAAACACTTAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCGTATACTAACATAAATGGAGGCAAAACACTCAAACACTTAAAA  839

seq1  ATTAAAGATAAAAGATATGGGTTGCTTTTGTTTTTTTGGGGGGGCTATAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATAAAAGATATGGGTTGCTTTTGTTTTTTTGGGGGGGCTATAG  889

seq1  AGTAGAGAACATGATTCTATGTTCCATCCTCATCATTAGTAAAAAAGATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGAACATGATTCTATGTTCCATCCTCATCATTAGTAAAAAAGATT  939

seq1  GTCTTTGATTGGTAGTAAGTTGAACTTTAACGATCTAATACATCATCTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATTGGTAGTAAGTTGAACTTTAACGATCTAATACATCATCTTC  989

seq1  TATCATCTCTACATAAAGAGATTATCTTGTTTAGCCTTTTTATAGCTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTCTACATAAAGAGATTATCTTGTTTAGCCTTTTTATAGCTTTT  1039

seq1  ATAGCTTTATGAGTTCATAAATTTTATATGTAGTTTTAGTACTGGAGAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTATGAGTTCATAAATTTTATATGTAGTTTTAGTACTGGAGAGT  1089

seq1  CCTGTGACTATTACTTTTTTAATTTTTTAATTTTTAATTTTTTGAGAAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACTATTACTTTTTTAATTTTTTAATTTTTAATTTTTTGAGAAAA  1139

seq1  GGTCCACAGT  1156
      ||||||||||
seq2  GGTCCACAGT  1149