BAC Information

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BAC

Clone NameB6Ng01-150C09
Chromosome1 (Build37)
Map Location 27,306,919 - 27,437,521
singlet/doubletdoublet
Overlap geneLOC677427
Upstream gene4931408C20Rik
Downstream geneLOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150C09.bB6Ng01-150C09.g
ACCDH946303DH946304
length1,1511,024
definitionDH946303|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C09, 5' end.DH946304|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,306,919 - 27,308,079)(27,436,956 - 27,437,521)
sequence
gaattcttttaaagtaaaagttgcataagcattgatgaaaatggtgattg
tcagggtaaaagaaaagcgtatgaaaaggctcaagcttctagctatatta
tgaacagatgctggaatatataattttcagaaaaatactaatgtttatgc
tgtattgtatacttaaattctgtctgaaattagacttctgtgggattttt
ttttttttggtttttgtttgtttgtttgttttgtttgttttttttttgtc
caaaatattcttttcaaaagaaatcctgtcaattaaaaaaccgagacaat
tattttggttgtggtggttatttcacaataaatatttatatcaaaccatg
ttagcgtctgcaaattttattcatcaactttctttcaataaaattgagga
tgtgtttacagtatggagattagaattctagtgcattaaaataaattctt
aaaaaagtaggtcccttgataaaataatatcctacttcacaacaacattt
tgcaattttcgtttcacaccctgatactgcttttggaaaattttaatgag
ggattttcttagaagttagtttctccatcaaaataccttaagtgacaagt
gtcatccatgttctcaagtttcccagtgcagttggagatgataaattgca
cagcgtgtgaatgaaaactgaaatgagtcaaagtacattttcttggaatt
ggcaaagcactctggtctcagtaaatgttctctaacacatcatgtaaaca
taagcaagttttaaaccctggctacccacacagattgctttaaaggaatc
aaatgtttgaggttcctatttgttctcctaaacttagatataatctaagt
cccaaaccatctctcttagcctttatccttcttcagaaattctaaattat
ttttctttcctatgggtatattcatctataatccactttcttgtctctca
tttttataatgtttttctgattcttttacatcagtactttgcattttgtt
taatataattctgtactgtttaaatccattgcagaacatctagccatgag
ccaggagcaacctcatgggtaaatcctacaactccaatcgattgatggat
cctatctgcatggtaacactattggtgacaccgtttgcatctatgatcct
a
gaattcaattgtcttactccttttcttccactgtttgtatgttcataggg
ttttagcattgttaagttattaatttaccttatatccagatttcagattc
ccctctcacctttccttccagtccctctcatcttcacctcctttctcccc
actaacccttctgtacatttgtctcagaaaaggtctgatgttccatacac
atcaaccagctttgacattttaagctgcagtaagacaagggataagaatg
tgagattagacttggtggaaagcaaggagaatagatttgcagttagcata
tctgctttgttggctgaaatggtctaaaggtttttcgaagaatacctgtt
caacttggaggtctgaataaagcaatatgtgggtcaggggaagttttgat
tggaaaatctgagtcagtgaagtcagtgaagacgtgggtagagaggaaag
tgaggctgtagcaggagctggggaagagactgggtttggacttggagaag
ttaagaaagatgtgaggataggtaccctagctgcctcagggtcaggagta
actgatctattcacagtgcccagaaattgcaaataacctagatgtctctc
aacaacaacaacaacaaaaatgaataataaaaatgcagtacatttataca
atgattactcagctgttaacaaaggaaatcattacattctcagataaaat
aaatcctaagtgaggtattccataccctggaagccaaatatggtttgttt
cctttatatacagatataagttaattcgatgatgagtaagctataatcta
gtaccagagaggatacttagactaagggatgatggtagatagatagaact
cattggaattgaatatagactgaataggtatggatagttggggaagctga
aggaacaaagggaatatgtgagagacagaatgatttgagttgtaggatca
aactaatatagtagagtttcttaaaatatatacagtatgaaggcaaacta
actaaaattctcaaataatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_27306919_27308079
seq2: B6Ng01-150C09.b_47_1197

seq1  GAATTCTTTTAAAGTAAAAGTTGCATAAGCATTGATGAAAATGGTGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAGTAAAAGTTGCATAAGCATTGATGAAAATGGTGATTG  50

seq1  TCAGGGTAAAAGAAAAGCGTATGAAAAGGCTCAAGCTTCTAGCTATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAAAAGAAAAGCGTATGAAAAGGCTCAAGCTTCTAGCTATATTA  100

seq1  TGAACAGATGCTGGAATATATAATTTTCAGAAAAATACTAATGTTTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGATGCTGGAATATATAATTTTCAGAAAAATACTAATGTTTATGC  150

seq1  TGTATTGTATACTTAAATTCTGTCTGAAATTAGACTTCTGTGGGATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTATACTTAAATTCTGTCTGAAATTAGACTTCTGTGGGATTTTT  200

seq1  TTTTTTTTGGTTTTTGTTTGTTTGTTTGTTTTGTTTGTTTTTTTTTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGTTTTTGTTTGTTTGTTTGTTTTGTTTGTTTTTTTTTTGTC  250

seq1  CAAAATATTCTTTTCAAAAGAAATCCTGTCAATTAAAAAACCGAGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTCTTTTCAAAAGAAATCCTGTCAATTAAAAAACCGAGACAAT  300

seq1  TATTTTGGTTGTGGTGGTTATTTCACAATAAATATTTATATCAAACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTTGTGGTGGTTATTTCACAATAAATATTTATATCAAACCATG  350

seq1  TTAGCGTCTGCAAATTTTATTCATCAACTTTCTTTCAATAAAATTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGTCTGCAAATTTTATTCATCAACTTTCTTTCAATAAAATTGAGGA  400

seq1  TGTGTTTACAGTATGGAGATTAGAATTCTAGTGCATTAAAATAAATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTACAGTATGGAGATTAGAATTCTAGTGCATTAAAATAAATTCTT  450

seq1  AAAAAAGTAGGTCCCTTGATAAAATAATATCCTACTTCACAACAACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTAGGTCCCTTGATAAAATAATATCCTACTTCACAACAACATTT  500

seq1  TGCAATTTTCGTTTCACACCCTGATACTGCTTTTGGAAAATTTTAATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTTCGTTTCACACCCTGATACTGCTTTTGGAAAATTTTAATGAG  550

seq1  GGATTTTCTTAGAAGTTAGTTTCTCCATCAAAATACCTTAAGTGACAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCTTAGAAGTTAGTTTCTCCATCAAAATACCTTAAGTGACAAGT  600

seq1  GTCATCCATGTTCTCAAGTTTCCCAGTGCAGTTGGAGATGATAAATTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCATGTTCTCAAGTTTCCCAGTGCAGTTGGAGATGATAAATTGCA  650

seq1  CAGCGTGTGAATGAAAACTGAAATGAGTCAAAGTACATTTTCTTGGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGTGAATGAAAACTGAAATGAGTCAAAGTACATTTTCTTGGAATT  700

seq1  GGCAAAGCACTCTGGTCTCAGTAAATGTTCTCTAACACATCATGTAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCACTCTGGTCTCAGTAAATGTTCTCTAACACATCATGTAAACA  750

seq1  TAAGCAAGTTTTAAACCCTGGCTACCCACACAGATTGCTTTAAAGGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGTTTTAAACCCTGGCTACCCACACAGATTGCTTTAAAGGAATC  800

seq1  AAATGTTTGAGGTTCCTATTTGTTCTCCTAAACTTAGATATAATCTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGAGGTTCCTATTTGTTCTCCTAAACTTAGATATAATCTAAGT  850

seq1  CCCAAACCATCTCTCTTAGCCTTTATCCTTCTTCAGAAATTCTAAATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCATCTCTCTTAGCCTTTATCCTTCTTCAGAAATTCTAAATTAT  900

seq1  TTTTCTTTCCTATGGTTATATTCATCTATAATCCACTTTCTTGTCTCTCA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCTATGGGTATATTCATCTATAATCCACTTTCTTGTCTCTCA  950

seq1  TTTTTATAATGTTTTTCTGATTCTTTTACATCAGGTACTTTGCATTTTGT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTTATAATGTTTTTCTGATTCTTTTACATCA-GTACTTTGCATTTTGT  999

seq1  TTAATTATATTCTGTACTGTTTAAAATCCATTGCAGAACATCTTAAGCCA  1050
      |||||   |||||||||||||| ||||||||||||||||||||  |||||
seq2  TTAATATAATTCTGTACTGTTT-AAATCCATTGCAGAACATCT--AGCCA  1046

seq1  TGAGCCAGGGAGCAAACTCAATGGGTAAAATCACTTACAATCTACAATTC  1100
      ||||||| ||||||| ||| |||||||||    | ||||| || ||||  
seq2  TGAGCCA-GGAGCAACCTC-ATGGGTAAA---TCCTACAA-CTCCAAT--  1088

seq1  AGATGGATGGAGTCCTATCATGCATGGTAAAAACATATGGTGACACACGT  1150
       ||| |||||| ||||||| |||||||||| |  || ||||||||| |||
seq2  CGATTGATGGA-TCCTATC-TGCATGGTAACACTAT-TGGTGACAC-CGT  1134

seq1  TTGCA------ATCCTA  1161
      |||||      ||||||
seq2  TTGCATCTATGATCCTA  1151

seq1: chr1_27436956_27437521
seq2: B6Ng01-150C09.g_68_633 (reverse)

seq1  CTGTGAATAGATCAGTTACTCCTGACCCTGAGGCAGCTAGGGTACCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATAGATCAGTTACTCCTGACCCTGAGGCAGCTAGGGTACCTATC  50

seq1  CTCACATCTTTCTTAACTTCTCCAAGTCCAAACCCAGTCTCTTCCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTTTCTTAACTTCTCCAAGTCCAAACCCAGTCTCTTCCCCAGC  100

seq1  TCCTGCTACAGCCTCACTTTCCTCTCTACCCACGTCTTCACTGACTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTACAGCCTCACTTTCCTCTCTACCCACGTCTTCACTGACTTCAC  150

seq1  TGACTCAGATTTTCCAATCAAAACTTCCCCTGACCCACATATTGCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGATTTTCCAATCAAAACTTCCCCTGACCCACATATTGCTTTAT  200

seq1  TCAGACCTCCAAGTTGAACAGGTATTCTTCGAAAAACCTTTAGACCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTCCAAGTTGAACAGGTATTCTTCGAAAAACCTTTAGACCATTT  250

seq1  CAGCCAACAAAGCAGATATGCTAACTGCAAATCTATTCTCCTTGCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACAAAGCAGATATGCTAACTGCAAATCTATTCTCCTTGCTTTCC  300

seq1  ACCAAGTCTAATCTCACATTCTTATCCCTTGTCTTACTGCAGCTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCTAATCTCACATTCTTATCCCTTGTCTTACTGCAGCTTAAAAT  350

seq1  GTCAAAGCTGGTTGATGTGTATGGAACATCAGACCTTTTCTGAGACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCTGGTTGATGTGTATGGAACATCAGACCTTTTCTGAGACAAAT  400

seq1  GTACAGAAGGGTTAGTGGGGAGAAAGGAGGTGAAGATGAGAGGGACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAGGGTTAGTGGGGAGAAAGGAGGTGAAGATGAGAGGGACTGGA  450

seq1  AGGAAAGGTGAGAGGGGAATCTGAAATCTGGATATAAGGTAAATTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTGAGAGGGGAATCTGAAATCTGGATATAAGGTAAATTAATAA  500

seq1  CTTAACAATGCTAAAACCCTATGAACATACAAACAGTGGAAGAAAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAATGCTAAAACCCTATGAACATACAAACAGTGGAAGAAAAGGAG  550

seq1  TAAGACAATTGAATTC  566
      ||||||||||||||||
seq2  TAAGACAATTGAATTC  566