BAC Information

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BAC

Clone NameB6Ng01-150N11
Chromosome1 (Build37)
Map Location 119,207,296 - 119,354,998
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150N11.bB6Ng01-150N11.g
ACCDH946816DH946817
length1,000291
definitionDH946816|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N11, 5' end.DH946817|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,353,974 - 119,354,998)(119,207,296 - 119,207,586)
sequence
gaattcagtaggaattcagtaaggaagttacctattcagtaactaggtaa
gcattacaaaggaccaagctggaatagctcagggctagtctgcagagtgt
ttacttgaggcagtaaccagccttacctaaacacaatggcctagcgaata
ggtgggtttaccatgagaaaagttagggattcccactgagacaggtttct
tcactaggcccaaagaaatcaggcagaactatagagcataaataaatttt
atgcctcagtccagctttttttttttaatattaataacagggaggaaatt
gtaacctcccccaagcctgaagctggctgagccagacctcgactttgctg
ccactaaggagattacctagggtggagcctgcctccctagatcactctat
tgttcagccactgccttggttcctcttcaagatactgctacctgctggga
ggccactgagcctccatcccagcacttgatgtttctcatctggagaaata
tgggctgggacacctctcttaagttgtgttttgcctctcctgagcagcat
gttggcatcccatgagcctgtcattccaatgtggaccaaggaacatagcc
tagtgcttcagaaattcacctccctgtacagggttctgacaccccggtca
tgagacagaaacatagaaccacactgatcaatggaatttaattgaaatcc
agttataaatccacacatctatggacatttgatctttgctaaagaagcca
aaactatacaatggaaaaatgaaaccatcttcaacaattggtactgtctt
catgtagaagaatgaaaatagatccatacttatcaccctgcataaaactc
aagtccaagtggatcaagaacctcaacataaaaccagataaaataaatct
catagaagagaaagtaaacaggaaagagggtccaagcaaggaccgctcac
ttagaaaaggaagtaaaatagtcatatttgggcagattgaggggagggaa

aaaacataaataaaaatattgccactcttttttcaatgtagtaccatcag
aaaaaaattcatgtgtgaaagtctggctgaataatctctcacctatgatg
taatgatattccagatatgctgggaagcaaacaggctaatagaaagaaga
ctgatgggaggagaggcccttggtcctgtgaaggctcgatgccccagtgt
aggggaattcaaggacaagaagttaggagtggaggaacacccacatagaa
gcaggggggatgatataggggatttcttggggggggtagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_119353974_119354998
seq2: B6Ng01-150N11.b_46_1045 (reverse)

seq1  TTCCCTCCCCTTACCTCTGCCTCCCAGTTCCCT-CCCTCAATCTG-CCAA  48
                                 |||||| ||||||||||| ||||
seq2  ---------------------------TTCCCTCCCCTCAATCTGCCCAA  23

seq1  ATATGACTATTTTACTTCCTTTTCTAAGTGAGCGGTCCTTGCTTGGACCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATGACTATTTTACTTCCTTTTCTAAGTGAGCGGTCCTTGCTTGGACCC  73

seq1  TCTTTCCTGTTTACTTTCTCTTCTATGAGATTTATTTTATCTGGTTTTAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGTTTACTTTCTCTTCTATGAGATTTATTTTATCTGGTTTTAT  123

seq1  GTTGAGGTTCTTGATCCACTTGGACTTGAGTTTTATGCAGGGTGATAAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGTTCTTGATCCACTTGGACTTGAGTTTTATGCAGGGTGATAAGT  173

seq1  ATGGATCTATTTTCATTCTTCTACATGAAGACAGTACCAATTGTTGAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTATTTTCATTCTTCTACATGAAGACAGTACCAATTGTTGAAGA  223

seq1  TGGTTTCATTTTTCCATTGTATAGTTTTGGCTTCTTTAGCAAAGATCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCATTTTTCCATTGTATAGTTTTGGCTTCTTTAGCAAAGATCAAA  273

seq1  TGTCCATAGATGTGTGGATTTATAACTGGATTTCAATTAAATTCCATTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATAGATGTGTGGATTTATAACTGGATTTCAATTAAATTCCATTGA  323

seq1  TCAGTGTGGTTCTATGTTTCTGTCTCATGACCGGGGTGTCAGAACCCTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGGTTCTATGTTTCTGTCTCATGACCGGGGTGTCAGAACCCTGT  373

seq1  ACAGGGAGGTGAATTTCTGAAGCACTAGGCTATGTTCCTTGGTCCACATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGGTGAATTTCTGAAGCACTAGGCTATGTTCCTTGGTCCACATT  423

seq1  GGAATGACAGGCTCATGGGATGCCAACATGCTGCTCAGGAGAGGCAAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGACAGGCTCATGGGATGCCAACATGCTGCTCAGGAGAGGCAAAAC  473

seq1  ACAACTTAAGAGAGGTGTCCCAGCCCATATTTCTCCAGATGAGAAACATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTAAGAGAGGTGTCCCAGCCCATATTTCTCCAGATGAGAAACATC  523

seq1  AAGTGCTGGGATGGAGGCTCAGTGGCCTCCCAGCAGGTAGCAGTATCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATGGAGGCTCAGTGGCCTCCCAGCAGGTAGCAGTATCTTG  573

seq1  AAGAGGAACCAAGGCAGTGGCTGAACAATAGAGTGATCTAGGGAGGCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAACCAAGGCAGTGGCTGAACAATAGAGTGATCTAGGGAGGCAGG  623

seq1  CTCCACCCTAGGTAATCTCCTTAGTGGCAGCAAAGTCGAGGTCTGGCTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCTAGGTAATCTCCTTAGTGGCAGCAAAGTCGAGGTCTGGCTCA  673

seq1  GCCAGCTTCAGGCTTGGGGGAGGTTACAATTTCCTCCCTGTTATTAATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTCAGGCTTGGGGGAGGTTACAATTTCCTCCCTGTTATTAATAT  723

seq1  TAAAAAAAAAAAGCTGGACTGAGGCATAAAATTTATTTATGCTCTATAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAGCTGGACTGAGGCATAAAATTTATTTATGCTCTATAGT  773

seq1  TCTGCCTGATTTCTTTGGGCCTAGTGAAGAAACCTGTCTCAGTGGGAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGATTTCTTTGGGCCTAGTGAAGAAACCTGTCTCAGTGGGAATC  823

seq1  CCTAACTTTTCTCATGGTAAACCCACCTATTCGCTAGGCCATTGTGTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTTTCTCATGGTAAACCCACCTATTCGCTAGGCCATTGTGTTTA  873

seq1  GGTAAGGCTGGTTACTGCCTCAAGTAAACACTCTGCAGACTAGCCCTGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGCTGGTTACTGCCTCAAGTAAACACTCTGCAGACTAGCCCTGAG  923

seq1  CTATTCCAGCTTGGTCCTTTGTAATGCTTACCTAGTTACTGAATAGGTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAGCTTGGTCCTTTGTAATGCTTACCTAGTTACTGAATAGGTAA  973

seq1  CTTCCTTACTGAATTCCTACTGAATTC  1025
      |||||||||||||||||||||||||||
seq2  CTTCCTTACTGAATTCCTACTGAATTC  1000

seq1: chr1_119207296_119207586
seq2: B6Ng01-150N11.g_74_364

seq1  AAAACATAAATAAAAATATTGCCACTCTTTTTTCAATGTAGTACCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAATAAAAATATTGCCACTCTTTTTTCAATGTAGTACCATCAG  50

seq1  AAAAAAATTCATGTGTGAAAGTCTGGCTGAATAATCTCTCACCTATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTCATGTGTGAAAGTCTGGCTGAATAATCTCTCACCTATGATG  100

seq1  TAATGATATTCCAGATATGCTGGGAAGCAAACAGGCTAATAGAAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATATTCCAGATATGCTGGGAAGCAAACAGGCTAATAGAAAGAAGA  150

seq1  CTGATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGT  200

seq1  AGGGGAATTCAAGGACAAGAAGTTAGGAGTGGAGGAACACCCACATAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATTCAAGGACAAGAAGTTAGGAGTGGAGGAACACCCACATAGAA  250

seq1  GCAGGGGGGATGATATAGGGGATTTCTTGGGGGGGGTAGAA  291
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGGGATGATATAGGGGATTTCTTGGGGGGGGTAGAA  291