BAC Information

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BAC

Clone NameB6Ng01-150O06
Chromosome1 (Build37)
Map Location 42,569,733 - 42,570,808
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150O06.g
ACCDH946853
length1,072
definitionDH946853|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactattttggtgaatagagacatagataatgcctccaagattca
taggagggtgtgtggtgtgccaaagcatcagaactggaagcctcagattt
tgtatcatgtagtcaactagattcagaagtaaaaatttgtgcttagtcac
aaggtgcaagtaagcaaggaagccagcctatatgtgcagcagagctcctt
aggcactaaacacacctctgccatggtgcagtgactcacaccctgagtgc
atgtttagaaggtttgcaagacacaggtcataaccccaaagaagatagag
gcatatataggagaccagcctagacaacagaggagacacagagtttgtag
aaactcagtataattaaattcactatagagatgtcttagatctcaaacag
cccacaagacatataaagacttggaggccagcctgtgacatctttgagag
atgttgggacatttaagatatgggacctaggagagaaaaattagatgact
gagatgtgcctttagaagggaatggtgggggctggagagatggctcagtg
gttaagagcactgactgctctttcagaggtcctgagttcaattcccagca
accacacagtgactcactaccatctgtaatgggatatgatgccctcttct
gaagacatctgcatctgaaaacagctacagtatattcacatataatcaat
caatgaataaatctttttttaaaaaaagagatggtagctgccaggtttct
tgttcttctgccctgattccaacatgagcttcctacataatgttctatct
taacacagactctaaggaaacagagccaggctaccgtaggtcatggacag
aaaacgcctgaacatgtgagctagactcactttcctcccttttaagtcgc
ttctctctctattgtgtgccaaagtcacaaagctgactagcactaaaatg
atctcctcatggacagaatcttcagtgccccaaggtatcctcgtattgag
gaaatttataggatagggagagaggcagatcgagcccatcctcctcgata
gaatatcattttctgtccatga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42569733_42570808
seq2: B6Ng01-150O06.g_64_1135

seq1  GAATTCACTATACAGGTGAATAGAGACATAGATAATCCCTCCAAAATTCA  50
      |||||||||||   |||||||||||||||||||||| ||||||| |||||
seq2  GAATTCACTATTTTGGTGAATAGAGACATAGATAATGCCTCCAAGATTCA  50

seq1  AAGTTTTGTATGTTAATGTGCCAAAGCATCAGAACTGGAAGCCTCAGATT  100
       ||    || || |  ||||||||||||||||||||||||||||||||||
seq2  TAGGAGGGTGTG-TGGTGTGCCAAAGCATCAGAACTGGAAGCCTCAGATT  99

seq1  TTGTATCATGTAGTCAACTAGATTCAGAAGTAAAAATTTGTGCTTAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCATGTAGTCAACTAGATTCAGAAGTAAAAATTTGTGCTTAGTCA  149

seq1  CAAGGTGCAAGTAAGCAAGCAAGCCAGCCTATATGTGCAGCAGAGCTCCT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAGGTGCAAGTAAGCAAGGAAGCCAGCCTATATGTGCAGCAGAGCTCCT  199

seq1  TAGGCACTAGACACACCTCTGCCATGGTGCAGTGACTCACACACTGAATG  250
      ||||||||| |||||||||||||||||||||||||||||||| |||| ||
seq2  TAGGCACTAAACACACCTCTGCCATGGTGCAGTGACTCACACCCTGAGTG  249

seq1  CATGTTTAGAAGGTTTGCAAGACACAGGTCATAACCCCAAAGAAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTAGAAGGTTTGCAAGACACAGGTCATAACCCCAAAGAAGATAGA  299

seq1  GGCATATATAGGAGACCAGCCTAGACAACAGAGGAGACACAAAGTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCATATATAGGAGACCAGCCTAGACAACAGAGGAGACACAGAGTTTGTA  349

seq1  GAAACTCAGTATAATTAAATTCAGTATAGAGATGTCTTAGATCTCAAACA  400
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAACTCAGTATAATTAAATTCACTATAGAGATGTCTTAGATCTCAAACA  399

seq1  GCCCACAAGACATATAAAGACTTGGAGGCCAGCCTGTGACATCTTTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAAGACATATAAAGACTTGGAGGCCAGCCTGTGACATCTTTGAGA  449

seq1  GATGTTGGGACATTTAAGATATGGGACCTAGGAGAGAAAAATTAGATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGGACATTTAAGATATGGGACCTAGGAGAGAAAAATTAGATGAC  499

seq1  TGAGATGTGCCTTTAGAAGGGAATGGTGGGGGCTGGAGAGATGGCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTGCCTTTAGAAGGGAATGGTGGGGGCTGGAGAGATGGCTCAGT  549

seq1  GGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGC  599

seq1  AACCACACAGTGACTCACTACCATCTGTAATGGGATATGATGCCCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACAGTGACTCACTACCATCTGTAATGGGATATGATGCCCTCTTC  649

seq1  TGAAGACATCTGCATCTGAAAACAGCTACAGTATATTCACATATAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATCTGCATCTGAAAACAGCTACAGTATATTCACATATAATCAA  699

seq1  TCAATAAATAAATCTTTTTTTAAAAAAAGAGATGGTAGCTGCCAGGTTTC  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAATAAATCTTTTTTTAAAAAAAGAGATGGTAGCTGCCAGGTTTC  749

seq1  TTGTTCTTCTGCCCTGATTCCATCATGAGCTTCCTACATAATGTTCTATC  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTTCTTCTGCCCTGATTCCAACATGAGCTTCCTACATAATGTTCTATC  799

seq1  TTACCACAGACTCTAAGGAAACAGAGCCAGGCTACCATGGGTCATGGACA  850
      ||| |||||||||||||||||||||||||||||||| | |||||||||||
seq2  TTAACACAGACTCTAAGGAAACAGAGCCAGGCTACCGTAGGTCATGGACA  849

seq1  GAAAACCACTGAACATGTGAGCTAGACTCAACTTTCCTTCCTTTTAAGTT  900
      ||||||  ||||||||||||||||||||| |||||||| |||||||||| 
seq2  GAAAACGCCTGAACATGTGAGCTAGACTC-ACTTTCCTCCCTTTTAAGTC  898

seq1  GCTTTTCTCTACTATTTTGTGCCAAAGTCACAAAGCTAACTAGCACTAAA  950
      |||| ||||| ||||| |||||||||||||||||||| ||||||||||||
seq2  GCTTCTCTCT-CTATTGTGTGCCAAAGTCACAAAGCTGACTAGCACTAAA  947

seq1  ATGATCTCCTCAAGGAACAGAATCTTCAGTGCCCCAAGGTATCTCCATAT  1000
      |||||||||||| || |||||||||||||||||||||||||||  | |||
seq2  ATGATCTCCTCATGG-ACAGAATCTTCAGTGCCCCAAGGTATCCTCGTAT  996

seq1  TGAGGAAATTTATAGGATAGGAGAAGAGGCCAGAACAAACCAATCACCCT  1050
      |||||||||||||||||||||   ||||| |||| | | || |||  |||
seq2  TGAGGAAATTTATAGGATAGGGAGAGAGG-CAGATCGAGCCCATCCTCCT  1045

seq1  CATTAG-ATATCATTTTCTGTTCATGA  1076
      |  ||| |||||||||||||| |||||
seq2  CGATAGAATATCATTTTCTGTCCATGA  1072