BAC Information

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BAC

Clone NameB6Ng01-151D09
Chromosome1 (Build37)
Map Location 175,324,373 - 175,477,293
singlet/doubletdoublet
Overlap geneAim2, EG240921, BC094916
Upstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
Downstream geneLOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151D09.bB6Ng01-151D09.g
ACCDH947094DH947095
length2951,151
definitionDH947094|Mus musculus domesticus DNA, BAC clone: B6Ng01-151D09, 5' end.DH947095|Mus musculus domesticus DNA, BAC clone: B6Ng01-151D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,476,999 - 175,477,293)(175,324,373 - 175,325,531)
sequence
cacacattctcccaccacaaataatgatggacataaatcagatattaata
ggggaaaatttctagctttgtttatcaactgattggttccccacctaatt
tttccagtgccacattttgtatttaactctcttttgcatgcatactcttg
gacaacactttggaatagaaagaaaaagatcattcacttacacaggaata
tcctgtttagggaattgttctctctctttctctctttctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctct
gaattcagagtttaagagtaggaatgttactgaatgatgccaaatggcct
ctacttagctaaatctgatattttcccatgtctccctttctatcttgaaa
cacggttcactggtaatgtagccttcccatttgtgtagttaaaataccat
ttagtggtaacaaccttcttactcaggtagttgaaacaaacacatggaat
ttcttaatgattgatgcataagaaatcaataggagattcatctgtaacac
tgtttctgtcagtgaagaccacaattgcagtccctgcttaccaggcagct
tctggaatgcaagaagcaaaatccccaggtttcccttgtctcgatggtca
gtagtgatcccccgctttccttacaacaacagaaagttctctaccaagtg
ttcaaaccacattggaggagcaattctggagtctcagataaatagtgaca
aacagcttgtgggttaggttttcctgtgagctagtgacaatgtgcaggac
acattggtaaatctcagccagggaagaggttgggaggttggaaggataat
tttggctgttgaaagaagagagacatagattgataggcaggcaggtctac
agatatgttgggcccagtcctgcaaaggcactgtggcttccaatagatgt
cacctactagaaaaaaaaactgttcatttttgtttgtatttacagagaga
tgcttcttcgtaaaacagtcttgtgtttatgccccccaccccaccccgcc
ccgccaccagtagttctgaaaatgcaaagggatatgatgattttacctcc
tctatgccatctttagaggttgcttaggctatgaaacaaaacagaaagtt
tctttctgtgctaaagatagttttccatgatgaatctttgaaagaataaa
tgacagacacgttgtgtgtgggatcaggtaaatggcaaactggtgggcac
agtaagagcagcccagagttgtgtctgattctgaagctttgctgttttcc
tggggacacctactggacctctctgagcttcctttttgctcactctcaaa
tagggacccatgcaaagacggaatttaataaggttacatggtgggtttat
gacctttggttacactggaagggccaccgattctttttctttatggtatg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175476999_175477293
seq2: B6Ng01-151D09.b_52_346 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAAAGAGAGAAAGAGAGAGAACAATTCCCTAAACAGGATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAGAGAGAAAGAGAGAGAACAATTCCCTAAACAGGATATTC  100

seq1  CTGTGTAAGTGAATGATCTTTTTCTTTCTATTCCAAAGTGTTGTCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAGTGAATGATCTTTTTCTTTCTATTCCAAAGTGTTGTCCAAGA  150

seq1  GTATGCATGCAAAAGAGAGTTAAATACAAAATGTGGCACTGGAAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGCAAAAGAGAGTTAAATACAAAATGTGGCACTGGAAAAATTA  200

seq1  GGTGGGGAACCAATCAGTTGATAAACAAAGCTAGAAATTTTCCCCTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGAACCAATCAGTTGATAAACAAAGCTAGAAATTTTCCCCTATTA  250

seq1  ATATCTGATTTATGTCCATCATTATTTGTGGTGGGAGAATGTGTG  295
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGATTTATGTCCATCATTATTTGTGGTGGGAGAATGTGTG  295

seq1: chr1_175324373_175325531
seq2: B6Ng01-151D09.g_69_1219

seq1  GAATTCAGAGTTTAAGAGTAGGAATGTTACTGAATGATGCCAAATGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTTAAGAGTAGGAATGTTACTGAATGATGCCAAATGGCCT  50

seq1  CTACTTAGCTAAATCTGATATTTTCCCATGTCTCCCTTTCTATCTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGCTAAATCTGATATTTTCCCATGTCTCCCTTTCTATCTTGAAA  100

seq1  CACGGTTCACTGGTAATGTAGCCTTCCCATTTGTGTAGTTAAAATACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTCACTGGTAATGTAGCCTTCCCATTTGTGTAGTTAAAATACCAT  150

seq1  TTAGTGGTAACAACCTTCTTACTCAGGTAGTTGAAACAAACACATGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTAACAACCTTCTTACTCAGGTAGTTGAAACAAACACATGGAAT  200

seq1  TTCTTAATGATTGATGCATAAGAAATCAATAGGAGATTCATCTGTAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGATTGATGCATAAGAAATCAATAGGAGATTCATCTGTAACAC  250

seq1  TGTTTCTGTCAGTGAAGACCACAATTGCAGTCCCTGCTTACCAGGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTCAGTGAAGACCACAATTGCAGTCCCTGCTTACCAGGCAGCT  300

seq1  TCTGGAATGCAAGAAGCAAAATCCCCAGGTTTCCCTTGTCTCGATGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGCAAGAAGCAAAATCCCCAGGTTTCCCTTGTCTCGATGGTCA  350

seq1  GTAGTGATCCCCCGCTTTCCTTACAACAACAGAAAGTTCTCTACCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATCCCCCGCTTTCCTTACAACAACAGAAAGTTCTCTACCAAGTG  400

seq1  TTCAAACCACATTGGAGGAGCAATTCTGGAGTCTCAGATAAATAGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCACATTGGAGGAGCAATTCTGGAGTCTCAGATAAATAGTGACA  450

seq1  AACAGCTTGTGGGTTAGGTTTTCCTGTGAGCTAGTGACAATGTGCAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTGTGGGTTAGGTTTTCCTGTGAGCTAGTGACAATGTGCAGGAC  500

seq1  ACATTGGTAAATCTCAGCCAGGGAAGAGGTTGGGAGGTTGGAAGGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTAAATCTCAGCCAGGGAAGAGGTTGGGAGGTTGGAAGGATAAT  550

seq1  TTTGGCTGTTGAAAGAAGAGAGACATAGATTGATAGGCAGGCAGGTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGTTGAAAGAAGAGAGACATAGATTGATAGGCAGGCAGGTCTAC  600

seq1  AGATATGTTGGGCCCAGTCCTGCAAAGGCACTGTGGCTTCCAATAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGTTGGGCCCAGTCCTGCAAAGGCACTGTGGCTTCCAATAGATGT  650

seq1  CACCTACTAGAAAAAAAAACTGTTCATTTTTGTTTGTATTTACAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACTAGAAAAAAAAACTGTTCATTTTTGTTTGTATTTACAGAGAGA  700

seq1  TGCTTCTTCGTAAAACAGTCTTGTGTTTATGCCCCCCACCCCACCCCGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTCGTAAAACAGTCTTGTGTTTATGCCCCCCACCCCACCCCGCC  750

seq1  CCGCCACCAGTAGTTCTGAAAATGCAAAGGGATATGATGATTTTACCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACCAGTAGTTCTGAAAATGCAAAGGGATATGATGATTTTACCTCC  800

seq1  TCTATGCCATCCTTAGAGGTTGCTTAGGCTATGAAACAAAACAGAAAGTT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCATCTTTAGAGGTTGCTTAGGCTATGAAACAAAACAGAAAGTT  850

seq1  TCTTCCTGTGCTAAAGATAGTTTTCCATGATGAATCTTTTGAGAGAATAA  900
      |||| ||||||||||||||||||||||||||||||| ||||| |||||||
seq2  TCTTTCTGTGCTAAAGATAGTTTTCCATGATGAATC-TTTGAAAGAATAA  899

seq1  ATGACAAGACACGTTGTGTGTTGGGATCAGGTAAATGGCAAACT-GTGGG  949
      ||||| |||||||||||||| ||||||||||||||||||||||| |||||
seq2  ATGAC-AGACACGTTGTGTG-TGGGATCAGGTAAATGGCAAACTGGTGGG  947

seq1  TACAGTAAGAGCAGCCCAGAGTTGTGTCTGAATCTGAAGCTTTGCTGTTT  999
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACAGTAAGAGCAGCCCAGAGTTGTGTCTGATTCTGAAGCTTTGCTGTTT  997

seq1  TCCTGGGGACACCTACTGGACCTCTCTGAGCTTCC-TTTTGCTCAC-CTC  1047
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TCCTGGGGACACCTACTGGACCTCTCTGAGCTTCCTTTTTGCTCACTCTC  1047

seq1  AAAATAAGGACCCATGCAAAAGACGGAATTAAAT-AGGGTACATGGTGTG  1096
       ||||| |||||||||| |||||||||||| ||| ||| ||||||||| |
seq2  -AAATAGGGACCCATGC-AAAGACGGAATTTAATAAGGTTACATGGTGGG  1095

seq1  TCTA-GACACTTGGTTACACTGGAAAGGCCCACACCGATTCCTTTCTCTT  1145
      | || |||  ||||||||||||||| |||   |||||||||       ||
seq2  TTTATGACCTTTGGTTACACTGGAAGGGC---CACCGATTC------TTT  1136

seq1  TTGTTTATGG-ATGG  1159
      || ||||||| ||||
seq2  TTCTTTATGGTATGG  1151