BAC Information

Click to search

BAC

Clone NameB6Ng01-151F06
Chromosome1 (Build37)Y (Build37)
Map Location 100,122,476 - 100,122,944573,468 - 573,565
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151F06.bB6Ng01-151F06.g
ACCDH947173DH947174
length463451
definitionDH947173|Mus musculus domesticus DNA, BAC clone: B6Ng01-151F06, 5' end.DH947174|Mus musculus domesticus DNA, BAC clone: B6Ng01-151F06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,122,476 - 100,122,944)(573,468 - 573,565)
sequence
tacctatccatcacacaaaatttatccatgaaccaggagcctttgtgaag
tggaatgaggtcatcaaaattgccttttgtactagagttattgaggaaag
aactgacattccttgtgatgtaccttatatattcattatagaataatcga
agactttgagatgtaattattgtaaagaaatattgaaaactaaatgtgta
ttcttatcagtcataagtcaaagttcatcagttattagttattatgtaac
agttgccttcaatgaccattttactttttaaaatttttgatattgtaata
ttattacattttcccttctctttcctccttccaaaaaattaccacatacc
tctaacatacactctcctccaaattcgtgaatacatgtgatgtgcatgtt
attgcatatatatatatatatatatatatatatatatatatatatatata
tatgtatgtatgt
atttcttgagtactaaaaactgagtcaaaagcctatgactggagaagtca
caagtcctaggtggtgaaaagtcacaagtccaagatggtggacccaatac
tattgcttccctaaatggatacataaactgctttataagtgtttaaggat
ttgtctatagtctagtgttcttttactcttgctaaacttcctttgccctg
gctgatggccaatgcagagtgctgagaatagggactgtttagtgctttgt
tttaaacaagagatctattttacatctacttaacaactgtcacagaatta
tgggtaaaaggagtctaagaactggacaatggagataagagttgtaacat
tggggagaggccccttggtcttgcaaactttatatgccccagtacagggg
aatgtcagggccaagaaatgggagagggtgggtaggggagcaaggtgggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100122476_100122944
seq2: B6Ng01-151F06.b_45_513 (reverse)

seq1  ACATACATACATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATATATGCAATAACATGCACATCACATGTATTCACGAATTTGGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGCAATAACATGCACATCACATGTATTCACGAATTTGGAGGAG  100

seq1  AGTGTATGTTAGAGGTATGTGGTAATTTTTTGGAAGGAGGAAAGAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGTTAGAGGTATGTGGTAATTTTTTGGAAGGAGGAAAGAGAAGG  150

seq1  GAAAATGTAATAATATTACAATATCAAAAATTTTAAAAAGTAAAATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTAATAATATTACAATATCAAAAATTTTAAAAAGTAAAATGGTC  200

seq1  ATTGAAGGCAACTGTTACATAATAACTAATAACTGATGAACTTTGACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGCAACTGTTACATAATAACTAATAACTGATGAACTTTGACTTA  250

seq1  TGACTGATAAGAATACACATTTAGTTTTCAATATTTCTTTACAATAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATAAGAATACACATTTAGTTTTCAATATTTCTTTACAATAATTA  300

seq1  CATCTCAAAGTCTTCGATTATTCTATAATGAATATATAAGGTACATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAAGTCTTCGATTATTCTATAATGAATATATAAGGTACATCACA  350

seq1  AGGAATGTCAGTTCTTTCCTCAATAACTCTAGTACAAAAGGCAATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTCAGTTCTTTCCTCAATAACTCTAGTACAAAAGGCAATTTTGA  400

seq1  TGACCTCATTCCACTTCACAAAGGCTCCTGGTTCATGGATAAATTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATTCCACTTCACAAAGGCTCCTGGTTCATGGATAAATTTTGTG  450

seq1  TGATGGATAGGTAGAATTC  469
      |||||||||||||||||||
seq2  TGATGGATAGGTAGAATTC  469

seq1: chrY_573468_573565
seq2: B6Ng01-151F06.g_430_526

seq1  GAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAATG  50

seq1  CCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCAAGGCAGGGGG  98
       |||||||||||| ||||||| ||||||||||| |||||||  |||| 
seq2  TCAGGGCCAAGAAATGGGAGAGGGTGGGTAGGGGAGCAAGGTGGGGG-  97