BAC Information

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BAC

Clone NameB6Ng01-151I13
Chromosome1 (Build37)
Map Location 41,359,288 - 41,406,578
singlet/doubletdoublet
Overlap geneLOC100041441
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151I13.bB6Ng01-151I13.g
ACCDH947329DH947330
length1,0111,220
definitionDH947329|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I13, 5' end.DH947330|Mus musculus domesticus DNA, BAC clone: B6Ng01-151I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,359,288 - 41,360,326)(41,405,337 - 41,406,578)
sequence
gaattcttgggaagtcacacatctcatactgctcaaattttggccctctt
ccatccacatcaatagggttcacatattagtattattttacatttcaaat
agaagtggttgaatagaaaatataccaagataaaagatattataaatcat
cagtgagtgcttcatttaacaagaaagctagtgcaagataaaagtgaggt
ggtattctctctctctctctctctctctctctctctctctctctctctct
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctctttcctttctgggaac
actctttaataaataaaacagatgtgttcctgcctgtgtataaaatggtt
tcattctatatacttcaaaccatctctagtatcatcaaaatgcttaatat
actaaaaatgctgcctggttggtattaacttctacttcttgcaacacagc
aagaatgtatctccacctgtttattgcacatacaaatacttttgaagttt
ccactgtgtggttggacacagacacagagagccaactttctaagcatcct
atctgtgcttactatcatctctgaagacattctaacccttatccccttca
tctgactgaagttgctatagtactcttgtcagactcccacctgatccttc
ctgctccagcagtgactctgtggttgggctgtgctatgctccaaaatatg
gagtatggagaaagagcacgtaggaccaaaggggagatgagaggaggaat
tgcaaagcagaactgagagactgaagagcagtacaatttgcatatagttt
ttcaaattatttcagaggaagtgcagcatgagtatttaattcaaagtcat
actcatatcataaaatgttccggctacagacagttcatgggataaaagac
ttgctgtcaccaaaaagcagagatcaataactttaaaacgcgaggatcat
tagaggttttcgccccccccttttcatattgataagggaaagttccatga
gattctagagt
gaattcaccccaaagccaacccacacgcgagttgtctctcctcctggcaa
tagtaaagacataaggtgcccatggtcatgaatactcaggactgacttcc
tttttccatgtcagaattttactggaaggtgcggctgtgtgacttatgat
acatactatttgtgggatgcagtttttacgttttcatctagaatgcaatg
caagtatttattgtcttcctcaaggtaccatgcagtaaataatgccttag
catccaccgaaccatgtgatatagttgctaccactgtggaagtcttgaac
caataaaaataaatagtttcccatctccctttaaaatggaagaatttact
attatttaagttgctccttggtctttgcatgtcaaatgagacttgtgaat
gctttccaaattaagagagacggctttgactgagcgaacaaatctttacg
ctaaagagtaatcatctctgaagtctccaatttagtacagagagaagaaa
tcaaaggaacatctgcattttcctacctccgtaagtcttcaaggattcat
ctaaactataatcttacctatactattataattacatcagacaaatttgg
tacaaatgtcgcatttcgggcaaagcaggaaaacatatcaagtaactgga
gatgaggcctttgaatcttctaaaaacaaaaaatagacacaaataaacca
ggagcaattttcaaatagacaggatgcaagtcattgatccaattatattt
atgtgataaaataaatgtaaaggttcttttgcccagcttatctctggcta
taggatgtgagcagaccataagcacttttggcatatacagcatacttcac
taaagatgacaacttttggataccttcaagacccaggacaggctgcattt
tgtattttcagaatatcttccaaaccgtccactctgtactgcatcagatt
tataaaaaagttcttggggctgataaaacagcttaaaggataaagctgct
gccaaccctgccgacctaggttcaatcccagggcctatgcgatagagaag
gagcagcggcctgtctgtaccttcctcatgatggtatgtagacacatacc
cttgcctggcacacaataacatggtaaataaaccaatccataaaacaaga
acaaacccaatccaaacaaggtctcacttggaattcaaggtaaagtggtt
gtttgctaaagtgggttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41359288_41360326
seq2: B6Ng01-151I13.b_45_1055

seq1  GAATTCTTGGGAAGTCACACATCTCATACTGCTCAAATTTTGGCCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGAAGTCACACATCTCATACTGCTCAAATTTTGGCCCTCTT  50

seq1  CCATCCACATCAATAGGGTTCACATATTAGTATTATTTTACATTTCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACATCAATAGGGTTCACATATTAGTATTATTTTACATTTCAAAT  100

seq1  AGAAGTGGTTGAATAGAAAATATACCAAGATAAAAGATATTATAAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGTTGAATAGAAAATATACCAAGATAAAAGATATTATAAATCAT  150

seq1  CAGTGAGTGCTTCATTTAACAAGAAAGCTAGTGCAAGATAAAAGTGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTGCTTCATTTAACAAGAAAGCTAGTGCAAGATAAAAGTGAGGT  200

seq1  GGTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAT--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  248

seq1  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCTTTCCTTTCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCTTTCCTTTCTGGGA  298

seq1  ACACTCTTTAATAAATAAAACAGATGTGTTCCTGCCTGTGTATAAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTTAATAAATAAAACAGATGTGTTCCTGCCTGTGTATAAAATGG  348

seq1  TTTCATTCTATATACTTCAAACCATCTCTAGTATCATCAAAATGCTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTATATACTTCAAACCATCTCTAGTATCATCAAAATGCTTAAT  398

seq1  ATACTAAAAATGCTGCCTGGTTGGTATTAACTTCTACTTCTTGCAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAAATGCTGCCTGGTTGGTATTAACTTCTACTTCTTGCAACACA  448

seq1  GCAAGAATGTATCTCCACCTGTTTATTGCACATACAAATACTTTTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGTATCTCCACCTGTTTATTGCACATACAAATACTTTTGAAGT  498

seq1  TTCCACTGTGTGGTTGGACACAGACACAGAGAGCCAACTTTCTAAGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGTGTGGTTGGACACAGACACAGAGAGCCAACTTTCTAAGCATC  548

seq1  CTATCTGTGCTTACTATCATCTCTGAAGACATTCTAACCCTTATCCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGCTTACTATCATCTCTGAAGACATTCTAACCCTTATCCCCTT  598

seq1  CATCTGACTGAAGTTGCTATAGTACTCTTGTCAGACTCCCACCTGATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACTGAAGTTGCTATAGTACTCTTGTCAGACTCCCACCTGATCCT  648

seq1  TCCTGCTCCAGCAGTGACTCTGTGGTTTGGGCAGTGCTATGCTCCAAAAT  700
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TCCTGCTCCAGCAGTGACTCTGTGG-TTGGGCTGTGCTATGCTCCAAAAT  697

seq1  ATGGAGTATGGAGAAGGAGCACGTAAGGACCAAAGGGGAGATGAGAGGAG  750
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  ATGGAGTATGGAGAAAGAGCACGT-AGGACCAAAGGGGAGATGAGAGGAG  746

seq1  GAATTGCAAAGCAGGAACTGAGAGACTGAAGAAGCAGTACAAGTTTGCAT  800
      ||||||||||||| ||||||||||||||||| |||||||||| |||||||
seq2  GAATTGCAAAGCA-GAACTGAGAGACTGAAG-AGCAGTACAA-TTTGCAT  793

seq1  ATAGTTTTTCTAAATTATTTCAAAGGAAG-GCAGCATGAGTATTTAATTC  849
      |||||||||| ||||||||||| |||||| ||||||||||||||||||||
seq2  ATAGTTTTTC-AAATTATTTCAGAGGAAGTGCAGCATGAGTATTTAATTC  842

seq1  AAAGTCATACGTCATATCATAAAATGTTTCTGGTCTACAAACAGTTCATG  899
      |||||||||| ||||||||||||||||| |  | ||||| ||||||||||
seq2  AAAGTCATAC-TCATATCATAAAATGTTCC--GGCTACAGACAGTTCATG  889

seq1  GAATAAAAGTACTTGCTGTCAACAAAAAAAAGCAGAAAATACAAATAGAC  949
      | ||||||| ||||||||||| |   |||||||||   | |  |||| ||
seq2  GGATAAAAG-ACTTGCTGTCACC---AAAAAGCAG---AGATCAATA-AC  931

seq1  TTTAAAAAGGCAAAGGATCATTAAAAAGGTTTTTGCCCCCCCCCTTTTCA  999
      ||||||| |    |||||||||  | ||||||| | ||||||||||||||
seq2  TTTAAAACG--CGAGGATCATT--AGAGGTTTTCG-CCCCCCCCTTTTCA  976

seq1  TATTGATAAAAGGGAGAAAGTTCCATGAGATTCTAAGAGT  1039
      |||||||||    | ||||||||||||||||||| |||||
seq2  TATTGATAA----GGGAAAGTTCCATGAGATTCT-AGAGT  1011

seq1: chr1_41405337_41406578
seq2: B6Ng01-151I13.g_68_1287 (reverse)

seq1  GAGAACCCAC-TTAGCAAAACAAACAACTTTAACACTGTGAAATCCACAG  49
      |||||||||| ||||||||   ||| |||||   ||  |||| |||| ||
seq2  GAGAACCCACTTTAGCAAA--CAACCACTTT---ACCTTGAATTCCA-AG  44

seq1  ATGAAGAAAACATATGTTAGAATTGGTTTGGTTTCTTTGTTTTATTTGAT  99
       ||    | || | |||| | ||||| || |||   |||||||| | |||
seq2  -TG----AGACCT-TGTTTGGATTGGGTTTGTT--CTTGTTTTA-TGGAT  85

seq1  TGGTTTATTTCCCATTGTTATGTGTATGCCAGGC-AGGGTATGTGTCTAC  148
      |||||||||| ||| |||||| ||| |||||||| |||||||||||||||
seq2  TGGTTTATTTACCA-TGTTAT-TGTGTGCCAGGCAAGGGTATGTGTCTAC  133

seq1  ATACCATCCATGGAGAGGTTACAGAACAGGCCGCTGCTCCTTCTCTATCG  198
      ||||||| ||||  || | ||||| |||||||||||||||||||||||||
seq2  ATACCAT-CATGAGGAAGGTACAG-ACAGGCCGCTGCTCCTTCTCTATCG  181

seq1  CATAGGCCCTGGGGATTGAACCTAGGTCGGCAGGGTTGGCAGCAAGCCTT  248
      |||||||||| |||||||||||||||||||||||||||||||| |||  |
seq2  CATAGGCCCT-GGGATTGAACCTAGGTCGGCAGGGTTGGCAGC-AGC--T  227

seq1  TTATCCTTTAAGCTGTTTTATCAGCCCCAAGAACTTTTTTTATAAATCTG  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATCCTTTAAGCTGTTTTATCAGCCCCAAGAAC-TTTTTTATAAATCTG  276

seq1  ATGCAGTACAGAGTGGACGGTTTGGAAGATATTCTGAAAATACAAAATGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTACAGAGTGGACGGTTTGGAAGATATTCTGAAAATACAAAATGC  326

seq1  AGCCTGTCCTGGGTCTTGAAGGTATCCAAAAGTTGTCATCTTTAGTGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCCTGGGTCTTGAAGGTATCCAAAAGTTGTCATCTTTAGTGAAG  376

seq1  TATGCTGTATATGCCAAAAGTGCTTATGGTCTGCTCACATCCTATAGCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTATATGCCAAAAGTGCTTATGGTCTGCTCACATCCTATAGCCA  426

seq1  GAGATAAGCTGGGCAAAAGAACCTTTACATTTATTTTATCACATAAATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGCTGGGCAAAAGAACCTTTACATTTATTTTATCACATAAATAT  476

seq1  AATTGGATCAATGACTTGCATCCTGTCTATTTGAAAATTGCTCCTGGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATCAATGACTTGCATCCTGTCTATTTGAAAATTGCTCCTGGTTT  526

seq1  ATTTGTGTCTATTTTTTGTTTTTAGAAGATTCAAAGGCCTCATCTCCAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTCTATTTTTTGTTTTTAGAAGATTCAAAGGCCTCATCTCCAGT  576

seq1  TACTTGATATGTTTTCCTGCTTTGCCCGAAATGCGACATTTGTACCAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATATGTTTTCCTGCTTTGCCCGAAATGCGACATTTGTACCAAAT  626

seq1  TTGTCTGATGTAATTATAATAGTATAGGTAAGATTATAGTTTAGATGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGATGTAATTATAATAGTATAGGTAAGATTATAGTTTAGATGAAT  676

seq1  CCTTGAAGACTTACGGAGGTAGGAAAATGCAGATGTTCCTTTGATTTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGACTTACGGAGGTAGGAAAATGCAGATGTTCCTTTGATTTCTT  726

seq1  CTCTCTGTACTAAATTGGAGACTTCAGAGATGATTACTCTTTAGCGTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTACTAAATTGGAGACTTCAGAGATGATTACTCTTTAGCGTAAA  776

seq1  GATTTGTTCGCTCAGTCAAAGCCGTCTCTCTTAATTTGGAAAGCATTCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTCGCTCAGTCAAAGCCGTCTCTCTTAATTTGGAAAGCATTCAC  826

seq1  AAGTCTCATTTGACATGCAAAGACCAAGGAGCAACTTAAATAATAGTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCATTTGACATGCAAAGACCAAGGAGCAACTTAAATAATAGTAAA  876

seq1  TTCTTCCATTTTAAAGGGAGATGGGAAACTATTTATTTTTATTGGTTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATTTTAAAGGGAGATGGGAAACTATTTATTTTTATTGGTTCAA  926

seq1  GACTTCCACAGTGGTAGCAACTATATCACATGGTTCGGTGGATGCTAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCACAGTGGTAGCAACTATATCACATGGTTCGGTGGATGCTAAGG  976

seq1  CATTATTTACTGCATGGTACCTTGAGGAAGACAATAAATACTTGCATTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTACTGCATGGTACCTTGAGGAAGACAATAAATACTTGCATTGC  1026

seq1  ATTCTAGATGAAAACGTAAAAACTGCATCCCACAAATAGTATGTATCATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATGAAAACGTAAAAACTGCATCCCACAAATAGTATGTATCATA  1076

seq1  AGTCACACAGCCGCACCTTCCAGTAAAATTCTGACATGGAAAAAGGAAGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACAGCCGCACCTTCCAGTAAAATTCTGACATGGAAAAAGGAAGT  1126

seq1  CAGTCCTGAGTATTCATGACCATGGGCACCTTATGTCTTTACTATTGCCA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGAGTATTCATGACCATGGGCACCTTATGTCTTTACTATTGCCA  1176

seq1  GGAGGAGAGACAACTCGCGTGTGGGTTGGCTTTGGGGTGAATTC  1242
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGACAACTCGCGTGTGGGTTGGCTTTGGGGTGAATTC  1220