BAC Information

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BAC

Clone NameB6Ng01-151J01
Chromosome1 (Build37)
Map Location 140,575,173 - 140,661,679
singlet/doubletdoublet
Overlap geneLOC545363, LOC667745
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7
Downstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151J01.bB6Ng01-151J01.g
ACCDH947352DH947353
length9631,148
definitionDH947352|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J01, 5' end.DH947353|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,575,173 - 140,576,132)(140,660,514 - 140,661,679)
sequence
gaattcagcactcagtttatttctttgggactatcctttgttcccagaat
cactgcaggtttcataagttgataggagtaagtgggagggttggtccagt
tctccatacatgtgcctgttctttgtattttcttccttaattttcatata
tgtcattcatattgtgtcttgcattgaaaggctgtaaacacagttgtagt
gggccactaagatcgaaagagaagtgtaatgtgttaaaactaaaaagaga
agttccctcagtggtaacaaggaccgaagtcttctcgggatggatggcac
ctttgactccagtggaggagatgtggcaaggtctttgggggtcctatgtg
tctcattctcagagttagaagttccatgcaggggtgaccaagtgaacaaa
gaggtccaggcatcctctaccaaatcacaaccaggaatgatggtggacca
gaacattcacagagagataaagacaaaacctagaccttaagaacagatcc
atggcattcctacctctgctagctctagctgtgtaagagaaggacaagga
gaaaaggagaaggggctggaagtttgacaagacaaggcaagcataaaaga
aagacaagctacaagaaatgattatttgtaacagtattttttccaaattt
gtttttatgttttttgatactttatccagagaggtttcttactgaacact
acatgaatgctaaccaagattctctgtgtgagcatacgtaccaagtgaga
gccgtgggtcatgaagtggcacagctctttacattgccctgtgactccat
ccttatctgacagtagcaacacaaacaacaaatatccatgtggatcactg
cagtttagagaaagtgaggccctccctaagttcccttgtggttggctcca
aacacagtagccataccgaatagactctccagggtgtgtaggtggatggg
ggttggaggaagg
gaattctcctgtaagtagactttcatatattggaagaaaacattcattat
cacctttagatagaatcaccaactctgggtttctttttcatttcattttt
gtagttcactcatatgtttttttccagtacagaggatatgggaatgtatt
ctgtactcagaaggttatttctttaaatttaacatggggcaggatggagt
gaacatatagaatatagacctagattatcaattttggagggaataaaatt
acttgtgggtttgattcctttgaatctctaccatctgaaggaagaggcag
atgacactgctaagagctactgtatgacagaatctgaagttgagtaccag
gtataggctctgggaccaggccggggaacattatgaagatggacagggac
tcaggaaatggtgtggtacaatgttaccccaagttccagaatggatgtca
aacatcatccaaagcagttgatttcttgtttcctgtttgagacacagaca
gattaatacaatagtgacaaatttagacaataccaaagtacagtgagtgg
ctactgaatgtgtagaatttaactcggaggagaatgtattccttttcctc
ccccaccatgcaaaaagagcacccatccctgaggtgggcagaggcatgtt
gcagttgatcgcaatgtttagttttactccaaaataactgtttaaggata
ttttaataagtgtttcattggttgcttgttgtattctgtgatcaatagag
tgggataaggtttattcctcaaaacatttctgaggcaagtctaagtctag
ccagtattgttagtctgtatatatagcaacatatattttaatcttagagt
gaaatagacctctcttactttatttgatgacattcttttctgtgtaacaa
tccaggtaggtatgttatcgtaaatataaatattttccattgactttgtg
tactcaaataattgtatcatgataaaattaaaaacactttcgtcaccatg
attcactagtgtttgctaacattctctctgcatccccttacctgtatttt
ccccattagttgaagcaagcatgaaatttcactttccagacagtctttga
acaaagcgagtgaagaagttaatttaatttaacctcatttttttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140575173_140576132
seq2: B6Ng01-151J01.b_45_1007

seq1  GAATTCAGCACTCAGTTTATTTCTTTGGGACTATCCTTTGTTCCCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTCAGTTTATTTCTTTGGGACTATCCTTTGTTCCCAGAAT  50

seq1  CACTGCAGGTTTCATAAGTTGATAGGAGTAAGTGGGAGGGTTGGTCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGTTTCATAAGTTGATAGGAGTAAGTGGGAGGGTTGGTCCAGT  100

seq1  TCTCCATACATGTGCCTGTTCTTTGTATTTTCTTCCTTAATTTTCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATACATGTGCCTGTTCTTTGTATTTTCTTCCTTAATTTTCATATA  150

seq1  TGTCATTCATATTGTGTCTTGCATTGAAAGGCTGTAAACACAGTTGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCATATTGTGTCTTGCATTGAAAGGCTGTAAACACAGTTGTAGT  200

seq1  GGGCCACTAAGATCGAAAGAGAAGTGTAATGTGTTAAAACTAAAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACTAAGATCGAAAGAGAAGTGTAATGTGTTAAAACTAAAAAGAGA  250

seq1  AGTTCCCTCAGTGGTAACAAGGACCGAAGTCTTCTCGGGATGGATGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTCAGTGGTAACAAGGACCGAAGTCTTCTCGGGATGGATGGCAC  300

seq1  CTTTGACTCCAGTGGAGGAGATGTGGCAAGGTCTTTGGGGGTCCTATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTCCAGTGGAGGAGATGTGGCAAGGTCTTTGGGGGTCCTATGTG  350

seq1  TCTCATTCTCAGAGTTAGAAGTTCCATGCAGGGGTGACCAAGTGAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCAGAGTTAGAAGTTCCATGCAGGGGTGACCAAGTGAACAAA  400

seq1  GAGGTCCAGGCATCCTCTACCAAATCACAACCAGGAATGATGGTGGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAGGCATCCTCTACCAAATCACAACCAGGAATGATGGTGGACCA  450

seq1  GAACATTCACAGAGAGATAAAGACAAAACCTAGACCTTAAGAACAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCACAGAGAGATAAAGACAAAACCTAGACCTTAAGAACAGATCC  500

seq1  ATGGCATTCCTACCTCTGCTAGCTCTAGCTGTGTAAGAGAAGGACAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCCTACCTCTGCTAGCTCTAGCTGTGTAAGAGAAGGACAAGGA  550

seq1  GAAAAGGAGAAGGGGCTGGAAGTTTGACAAGACAAGGCAAGCATAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGAAGGGGCTGGAAGTTTGACAAGACAAGGCAAGCATAAAAGA  600

seq1  AAGACAAGCTACAAGAAATGATTATTTGTAACAGTATTTTTTCCAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGCTACAAGAAATGATTATTTGTAACAGTATTTTTTCCAAATTT  650

seq1  GTTTTTATGTTTTTTGATACTTTATCCAGAGAGGTTTCTTACTGAACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATGTTTTTTGATACTTTATCCAGAGAGGTTTCTTACTGAACACT  700

seq1  ACATGAATGCTAACCAAGATTCTCTGTGTGAGCATACGTACCAAGTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATGCTAACCAAGATTCTCTGTGTGAGCATACGTACCAAGTGAGA  750

seq1  GCCGTGGGTCATGAAGTGGCACAGCTCTTTACATTGCCCTGTGACTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGGTCATGAAGTGGCACAGCTCTTTACATTGCCCTGTGACTCCAT  800

seq1  CCTTATCTGACAGTAGCAACACAAACAACAAATATCCATGTGGATCACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTGACAGTAGCAACACAAACAACAAATATCCATGTGGATCACTG  850

seq1  CAGTTTAGAGAAGGTGAGGCCCTCCCTAAGTTCCCTTGTGGTTGGCTCCA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGAGAAAGTGAGGCCCTCCCTAAGTTCCCTTGTGGTTGGCTCCA  900

seq1  AACACAGTAGCCATACCGAATAGACTCTCCAGGGTGTGTAGGT-GAT-GG  948
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  AACACAGTAGCCATACCGAATAGACTCTCCAGGGTGTGTAGGTGGATGGG  950

seq1  GGTTGG-GGAAGG  960
      |||||| ||||||
seq2  GGTTGGAGGAAGG  963

seq1: chr1_140660514_140661679
seq2: B6Ng01-151J01.g_67_1214 (reverse)

seq1  TTAAAAAAAAATGAAGTTAAATATAAATTTAACCTCCCTTCCCACTGCTT  50
      |||||||||||||| ||||||| |||| ||||| |  |||| | | ||||
seq2  TTAAAAAAAAATGAGGTTAAAT-TAAA-TTAACTT--CTTCACTC-GCTT  45

seq1  ATGGTTTCCAAAAGGGCCTGTCTGGAAAGGTGAAATTTTCCATGCTTGCT  100
          | | ||||   | ||||||||||| |||||||||  ||||||||| 
seq2  ----TGTTCAAA---GACTGTCTGGAAA-GTGAAATTT--CATGCTTGC-  84

seq1  TTCAACCTAATGGGG-AAATACAGGTAGGGGGATGCAGAGAGAATGTTTA  149
      ||||| ||||||||| ||||||||||| |||||||||||||||||| |||
seq2  TTCAA-CTAATGGGGAAAATACAGGTAAGGGGATGCAGAGAGAATG-TTA  132

seq1  GCAAACACTAGTGATTCATGGTGACGAAAGTGTTTTTAATTTTATCATGA  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAAACACTAGTGAATCATGGTGACGAAAGTGTTTTTAATTTTATCATGA  182

seq1  TACAATTATTTGGAGTACACAAAGTCAATGGAAAATATTTATATTTACGA  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATTT-GAGTACACAAAGTCAATGGAAAATATTTATATTTACGA  231

seq1  TAACATACCTACCTGGATTTGTTACACAG-AAAGAATGTCATCAAAT-AA  297
      ||||||||||||||||| ||||||||||| ||||||||||||||||| ||
seq2  TAACATACCTACCTGGA-TTGTTACACAGAAAAGAATGTCATCAAATAAA  280

seq1  GTAAGAGAGGTCTATTTTCACTCTAAGATTAAAATATATGTTGCTATATA  347
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAGGTCTA-TTTCACTCTAAGATTAAAATATATGTTGCTATATA  329

seq1  TACAGACTAACAATACTGGCTAGACTTAGACTTGCCTCAGAAATGTTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTAACAATACTGGCTAGACTTAGACTTGCCTCAGAAATGTTTTG  379

seq1  AGGAATAAACCTTATCCCACTCTATTGATCACAGAATACAACAAGCAACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAACCTTATCCCACTCTATTGATCACAGAATACAACAAGCAACC  429

seq1  AATGAAACACTTATTAAAATATCCTTAAACAGTTATTTTGGAGTAAAACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACACTTATTAAAATATCCTTAAACAGTTATTTTGGAGTAAAACT  479

seq1  AAACATTGCGATCAACTGCAACATGCCTCTGCCCACCTCAGGGATGGGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGCGATCAACTGCAACATGCCTCTGCCCACCTCAGGGATGGGTG  529

seq1  CTCTTTTTGCATGGTGGGGGAGGAAAAGGAATACATTCTCCTCCGAGTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGCATGGTGGGGGAGGAAAAGGAATACATTCTCCTCCGAGTTA  579

seq1  AATTCTACACATTCAGTAGCCACTCACTGTACTTTGGTATTGTCTAAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACACATTCAGTAGCCACTCACTGTACTTTGGTATTGTCTAAATT  629

seq1  TGTCACTATTGTATTAATCTGTCTGTGTCTCAAACAGGAAACAAGAAATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTATTGTATTAATCTGTCTGTGTCTCAAACAGGAAACAAGAAATC  679

seq1  AACTGCTTTGGATGATGTTTGACATCCATTCTGGAACTTGGGGTAACATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTGGATGATGTTTGACATCCATTCTGGAACTTGGGGTAACATT  729

seq1  GTACCACACCATTTCCTGAGTCCCTGTCCATCTTCATAATGTTCCCCGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACACCATTTCCTGAGTCCCTGTCCATCTTCATAATGTTCCCCGGC  779

seq1  CTGGTCCCAGAGCCTATACCTGGTACTCAACTTCAGATTCTGTCATACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCCAGAGCCTATACCTGGTACTCAACTTCAGATTCTGTCATACAG  829

seq1  TAGCTCTTAGCAGTGTCATCTGCCTCTTCCTTCAGATGGTAGAGATTCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTAGCAGTGTCATCTGCCTCTTCCTTCAGATGGTAGAGATTCAA  879

seq1  AGGAATCAAACCCACAAGTAATTTTATTCCCTCCAAAATTGATAATCTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAAACCCACAAGTAATTTTATTCCCTCCAAAATTGATAATCTAG  929

seq1  GTCTATATTCTATATGTTCACTCCATCCTGCCCCATGTTAAATTTAAAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATTCTATATGTTCACTCCATCCTGCCCCATGTTAAATTTAAAGA  979

seq1  AATAACCTTCTGAGTACAGAATACATTCCCATATCCTCTGTACTGGAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTTCTGAGTACAGAATACATTCCCATATCCTCTGTACTGGAAAA  1029

seq1  AAACATATGAGTGAACTACAAAAATGAAATGAAAAAGAAACCCAGAGTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATGAGTGAACTACAAAAATGAAATGAAAAAGAAACCCAGAGTTG  1079

seq1  GTGATTCTATCTAAAGGTGATAATGAATGTTTTCTTCCAATATATGAAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTATCTAAAGGTGATAATGAATGTTTTCTTCCAATATATGAAAG  1129

seq1  TCTACTTACAGGAGAATTC  1166
      |||||||||||||||||||
seq2  TCTACTTACAGGAGAATTC  1148