BAC Information

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BAC

Clone NameB6Ng01-151K08
Chromosome1 (Build37)
Map Location 77,710,708 - 77,851,881
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151K08.bB6Ng01-151K08.g
ACCDH947414DH947415
length1,1031,123
definitionDH947414|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K08, 5' end.DH947415|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,710,708 - 77,711,820)(77,850,754 - 77,851,881)
sequence
gaattcaaggccagcctggtctacataatgagttctatgttagccagggt
tacataatgacactctgtctaaaaaacagaaacaccaaattagtttaaat
tctaactggagcatctgcagatgtgacaaaatatatcaatattttctggt
tatataaaccttcagttctacaaatggctgctggtgaatatttactccat
tcacagacattgacagatgtttcatttctgtgttattgtcatattttggt
taaaatgagtcagaagcacaaaaatatgaacaaactcttttatgataaga
aaacacaaaactctcttcgcgttctctcttacttagatcacctctgtata
aactcctagggatttcaagacacagactccagacgtgccctttgcaggta
gatgttcgtggtttagaggcttgtgacatcggggctgtgtagcaaagctt
atgtgaaataaaaacaacaacaaaaaattatccaattggttcgctgttat
cttgctgtggctcagcctagaggtgagtgagccttcagaagagatggagg
aaaaaagagagagagaagaaaaagaaaaaaaatatatagattgcttaaat
ggccttgaaaatgtacctggaaaattcctgcaatttgttaccaggctttt
cttagcctgttgttaagattccttctttcattcttgtgtgtattccccca
aagcttgctttgtcatttaaaccaaaatgatttagataaagagcttgatc
gacgagaataaatccacaagtttttctcctgcatgggatatctttttttt
ttttttttaggtgataaaacttaaaaatatgttcggttcaatactcacac
ttctcatttctttctagatgatagtgcgatgctgtgttgtgtgctggtaa
atcactgcagcatctcactccaggagctgacagcatttttgaatggtcca
gaaaatgacacacgtatatcaatatagcactttgctgcatgcagctacag
gcaggtgggctctggtgtcttctcccacttttcttgggttgtttcaggaa
cacttgtctaaggttctgggaccaagattccatcagctatttgggcacaa
aag
gaattcagataccctatttcctgatacctaaacagaagccacctcaagtt
gtgaaatatcaaactatgtatagaatttgtctttagaaatgtatctaagg
gccattgaggtggcttaatgtgcaaatctgcttgctgtcagtctgtaaag
atttaaatgtgatcccaaggtctagagaactgactccacacattgtcctt
taccctccacatgcatgtcatgtcacacatgcacacatgtacacacacac
acacacacacacacacacacacacacacacacacacacagttaatataaa
aactgcattttaagctgatggaagcttttttttgatactatgatataaaa
tactgtttcagtaacctctttattattaatcatttatttgggataatgaa
ctcctaaacacattaaatcaacccaatttgatggttatccaagatgttgg
cacattttagaaaagctaggaggtagaaattgagattcatggcatgtaac
aagctcttgcaaagaatgaaaaagatacctaaaaatctaaacaacaacca
aaattgttaatcaagcattattctgcataaagacatgggtctcctgatta
tgaatttaactataaaaatctacatgttaaatattggattcagagccagt
aaatatatttgtctctgtgacaggactgactgtcacatggacataaaatt
aaagcagtacaataacccacaaggcattctcatgagtcactaccatagtg
tcattattattagtggatgcacaaactaaatgtcacactaatgggtagta
ttttcatctgctattggcataggacttggaaagtattcctttagttatgt
tgcctgtctactcattccaaatcttatttctttagttgctctaatgctat
agaccagaccatgttacaaaatgtccaaacggatgaaagggttaaagaag
caatggtaatatttaaagtattcctgaaataattgttactagtgcctgtg
taaacaaaaaatcaaaatgggaattggattgcaatcgtcagtcaaaacaa
atggcagagttctgcagggagcaatccttcatgaattcaattatttttcc
ttatttgagaatacacactcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77710708_77711820
seq2: B6Ng01-151K08.b_45_1147

seq1  GAATTCAAGGCCAGCCTGGTCTACATAATGAGTTCTATGTTAGCCAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACATAATGAGTTCTATGTTAGCCAGGGT  50

seq1  TACATAATGACACTCTGTCTAAAAAACAGAAACACCAAATTAGTTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGACACTCTGTCTAAAAAACAGAAACACCAAATTAGTTTAAAT  100

seq1  TCTAACTGGAGCATCTGCAGATGTGACAAAATATATCAATATTTTCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGGAGCATCTGCAGATGTGACAAAATATATCAATATTTTCTGGT  150

seq1  TATATAAACCTTCAGTTCTACAAATGGCTGCTGGTGAATATTTACTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACCTTCAGTTCTACAAATGGCTGCTGGTGAATATTTACTCCAT  200

seq1  TCACAGACATTGACAGATGTTTCATTTCTGTGTTATTGTCATATTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACATTGACAGATGTTTCATTTCTGTGTTATTGTCATATTTTGGT  250

seq1  TAAAATGAGTCAGAAGCACAAAAATATGAACAAACTCTTTTATGATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGTCAGAAGCACAAAAATATGAACAAACTCTTTTATGATAAGA  300

seq1  AAACACAAAACTCTCTTCGCGTTCTCTCTTACTTAGATCACCTCTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAACTCTCTTCGCGTTCTCTCTTACTTAGATCACCTCTGTATA  350

seq1  AACTCCTAGGGATTTCAAGACACAGACTCCAGACGTGCCCTTTGCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAGGGATTTCAAGACACAGACTCCAGACGTGCCCTTTGCAGGTA  400

seq1  GATGTTCGTGGTTTAGAGGCTTGTGACATCGGGGCTGTGTAGCAAAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCGTGGTTTAGAGGCTTGTGACATCGGGGCTGTGTAGCAAAGCTT  450

seq1  ATGTGAAATAAAAACAACAACAAAAAATTATCCAATTGGTTCGCTGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATAAAAACAACAACAAAAAATTATCCAATTGGTTCGCTGTTAT  500

seq1  CTTGCTGTGGCTCAGCCTAGAGGTGAGTGAGCCTTCAGAAGAGATGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGGCTCAGCCTAGAGGTGAGTGAGCCTTCAGAAGAGATGGAGG  550

seq1  AAAAAAGAGAGAGAGAAGAAAAAGAAAAAAAATATATAGATTGCTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGAGAGAGAAGAAAAAGAAAAAAAATATATAGATTGCTTAAAT  600

seq1  GGCCTTGAAAATGTACCTGGAAAATTCCTGCAATTTGTTACCAGGCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAAAATGTACCTGGAAAATTCCTGCAATTTGTTACCAGGCTTTT  650

seq1  CTTAGCCTGTTGTTAAGATTCCTTCTTTCATTCTTGTGTGTATTCCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTGTTGTTAAGATTCCTTCTTTCATTCTTGTGTGTATTCCCCCA  700

seq1  AAGCTTGCTTTGTCATTTAAACCAAAATGATTTAGATAAAGAGCTTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCTTTGTCATTTAAACCAAAATGATTTAGATAAAGAGCTTGATC  750

seq1  GACGAGAATAAATCCACAAGTTTTTCTCCTGCATGGGATATC-TTTTTTT  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GACGAGAATAAATCCACAAGTTTTTCTCCTGCATGGGATATCTTTTTTTT  800

seq1  TTTTTTTTAGGTGATAAAACTTAAAAATATGTTCGGTTCAATACTCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAGGTGATAAAACTTAAAAATATGTTCGGTTCAATACTCACAC  850

seq1  TTCTCATTTCTTTCTAAATGATAGTGCGATGCTGTGTTGTGTGCTGGTAA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTCATTTCTTTCTAGATGATAGTGCGATGCTGTGTTGTGTGCTGGTAA  900

seq1  ATCACTGCAGCATCTCACTCCA-GAGCTGACAGCATTTTT-AATGGTCCA  947
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ATCACTGCAGCATCTCACTCCAGGAGCTGACAGCATTTTTGAATGGTCCA  950

seq1  GAAAATGACACCACGTATATCAATATAAGCACCTTGCCTGCATGCAGCTA  997
      |||||||||| ||||||||||||||| ||||| ||| |||||||||||||
seq2  GAAAATGACA-CACGTATATCAATAT-AGCACTTTG-CTGCATGCAGCTA  997

seq1  CAGGCAGGGTGGGCTCTGGTGTCTTCTCCCCACTTTTCTTGGGGTGTTTC  1047
      |||||| |||||||||||||||||||| ||||||||||||||| ||||||
seq2  CAGGCA-GGTGGGCTCTGGTGTCTTCT-CCCACTTTTCTTGGGTTGTTTC  1045

seq1  AAGGAAACCACTTGTCTTAGGTTTCTGGGCACAAGAATCCCATCAGCTCA  1097
       |||||  ||||||||| ||| |||||||  |||| || ||||||||   
seq2  -AGGAA--CACTTGTCTAAGG-TTCTGGGACCAAG-ATTCCATCAGC---  1087

seq1  TATTGGGGCACAAAAG  1113
      |||| |||||||||||
seq2  TATTTGGGCACAAAAG  1103

seq1: chr1_77850754_77851881
seq2: B6Ng01-151K08.g_69_1191 (reverse)

seq1  TATGA--GTGTAATCT--AATAAGG-AAAATAATTG-ATTCATAGGAGGA  44
      |||||  ||||| |||  ||||||| |||||||||| |||||| | ||||
seq2  TATGAGTGTGTATTCTCAAATAAGGAAAAATAATTGAATTCAT-GAAGGA  49

seq1  TTGCTCCCTTGACAAACCTGCCATTGTTTTAGACTG-CAATTGCAATCCA  93
      |||||||||  | ||  ||||||||  ||| ||||| | |||||||||||
seq2  TTGCTCCCTGCAGAACTCTGCCATTTGTTTTGACTGACGATTGCAATCCA  99

seq1  AATCCCATTTCAGATCTTTTGTTTACACATGGACACTAGTAAACAATTAT  143
      | ||||||||  ||| |||||||||||||  | ||||||| |||||||| 
seq2  ATTCCCATTT-TGATTTTTTGTTTACACA--GGCACTAGT-AACAATTA-  144

seq1  TTTCAGGAAATACTTTAAATATTTACATTTGCTTCTTTAACCATTTCATC  193
      ||||||| ||||||||||||| ||||  |||||||||||||| |||||||
seq2  TTTCAGG-AATACTTTAAATA-TTACCATTGCTTCTTTAACCCTTTCATC  192

seq1  CGTTTGGACATTTTGTAACATGGGTCTGGTCTATAAGCATTAGAGCAACT  243
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CGTTTGGACATTTTGTAACAT-GGTCTGGTCTAT-AGCATTAGAGCAACT  240

seq1  AAAAGAACTAAGATTTGGGATGAGTAGACAGGCAACATAACTAAATGAAT  293
       |||||| |||||||||| |||||||||||||||||||||||||| ||||
seq2  -AAAGAAATAAGATTTGGAATGAGTAGACAGGCAACATAACTAAAGGAAT  289

seq1  ACTCTTCAAGTCCTAAGCCAATAGCAGATGAAATAACTACCCATTAGTGT  343
      ||| | ||||||||| |||||||||||||||||  |||||||||||||||
seq2  ACTTTCCAAGTCCTATGCCAATAGCAGATGAAAATACTACCCATTAGTGT  339

seq1  GACATTTAGTTTGTGCATCCACTAAATAATAATGACACTATGGTAGTGAC  393
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACATTTAGTTTGTGCATCCACT-AATAATAATGACACTATGGTAGTGAC  388

seq1  TCATGAGAATGCCTTGTGGGTTATTGTACTGCTTTAATTTTATGTCCATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAATGCCTTGTGGGTTATTGTACTGCTTTAATTTTATGTCCATG  438

seq1  TGACAGTCAGTCCTGTCACAGAGACAAATATATTTACTGGCTCTGAATCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCAGTCCTGTCACAGAGACAAATATATTTACTGGCTCTGAATCC  488

seq1  AATATTTAACATGTAGATTTTTATAGTTAAATTCATAATCAGGAGACCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAACATGTAGATTTTTATAGTTAAATTCATAATCAGGAGACCCA  538

seq1  TGTCTTTATGCAGAATAATGCTTGATTAACAATTTTGGTTGTTGTTTAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATGCAGAATAATGCTTGATTAACAATTTTGGTTGTTGTTTAGA  588

seq1  TTTTTAGGTATCTTTTTCATTCTTTGCAAGAGCTTGTTACATGCCATGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGTATCTTTTTCATTCTTTGCAAGAGCTTGTTACATGCCATGAA  638

seq1  TCTCAATTTCTACCTCCTAGCTTTTCTAAAATGTGCCAACATCTTGGATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTCTACCTCCTAGCTTTTCTAAAATGTGCCAACATCTTGGATA  688

seq1  ACCATCAAATTGGGTTGATTTAATGTGTTTAGGAGTTCATTATCCCAAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAAATTGGGTTGATTTAATGTGTTTAGGAGTTCATTATCCCAAAT  738

seq1  AAATGATTAATAATAAAGAGGTTACTGAAACAGTATTTTATATCATAGTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTAATAATAAAGAGGTTACTGAAACAGTATTTTATATCATAGTA  788

seq1  TCAAAAAAAAGCTTCCATCAGCTTAAAATGCAGTTTTTATATTAACTGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAGCTTCCATCAGCTTAAAATGCAGTTTTTATATTAACTGTG  838

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATG  888

seq1  TGTGCATGTGTGACATGACATGCATGTGGAGGGTAAAGGACAATGTGTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGTGACATGACATGCATGTGGAGGGTAAAGGACAATGTGTGG  938

seq1  AGTCAGTTCTCTAGACCTTGGGATCACATTTAAATCTTTACAGACTGACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCTCTAGACCTTGGGATCACATTTAAATCTTTACAGACTGACA  988

seq1  GCAAGCAGATTTGCACATTAAGCCACCTCAATGGCCCTTAGATACATTTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGATTTGCACATTAAGCCACCTCAATGGCCCTTAGATACATTTC  1038

seq1  TAAAGACAAATTCTATACATAGTTTGATATTTCACAACTTGAGGTGGCTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAAATTCTATACATAGTTTGATATTTCACAACTTGAGGTGGCTT  1088

seq1  CTGTTTAGGTATCAGGAAATAGGGTATCTGAATTC  1128
      |||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGGTATCAGGAAATAGGGTATCTGAATTC  1123