BAC Information

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BAC

Clone NameB6Ng01-152B03
Chromosome1 (Build37)
Map Location 174,215,936 - 174,340,856
singlet/doubletdoublet
Overlap geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Upstream geneUsp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152B03.bB6Ng01-152B03.g
ACCDH947736DH947737
length1,141821
definitionDH947736|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B03, 5' end.DH947737|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,215,936 - 174,217,076)(174,340,036 - 174,340,856)
sequence
gaattcagtgtcacggtgggggaagggaggagatggaggatggagacaga
gcatcagccgaggtcaccaaagcagctacagggtgagagagggaaagctg
ggtgtctgcaaggagccccccaatacatctgtgtctgcactcactggctg
gccccctaccttagacacggagatgttctcttgtccagccttgaagacag
cacgattgcagagaccagcgatccgagacagggctgtccatgtgggggac
cgtttgtcaaaagtggcccctgggaagaaaggagggagaagcttggctct
cccttagagcatttcataccccaggatccctcttctgcgtggtccctcgg
caggatccatttcccgtcaccctttccggagcacccaaatcaccagactg
gtcctctgtggtgtcagcctcatggatctggttgtcaaaccacatgtgag
ccactgtcatgcggttctgggtgagggtgcccgtcttgtctgagcagatg
gtggacgtggagcccagcgtctccacggcctccaggttcttcaccaggca
gtttttgcgagccatgcgcttggctgtcagcgtcaggcacacctggcaga
cagagaggagaattaaaagggccaagtcgagagtgacaggtgtctatgat
tctttcccattcggaagctctaatccttttctattaatcccactcacaaa
agactgggtgggacctagcaggaaatagcgacagttcaactttaggcatc
ttaaataggttcttaggccgtatctgtggtaaacgcccggaagaaagttc
atgatatctgactccagagcagtacaaagatgtggcaaccacccacatga
aagggacacagaaactatggatgaaaatggttcctctgagggcagcaagg
agaaaagctggggctagggcttgacagtcactgagctgctgtgaggacag
gagaaccaggatagtgacacatcacagtggctgatgaagacaggggatgg
acagaagtattcatttcagcagcagcagcattaaaggtggaaagctgaag
aatgtccatggaatttgcagttaagtcactggtgacctttgaaaaagtct
ttatagcacacgagaaaggaatgaaacccacgactggagtc
gaattcaaaataagctagggttacatatctacatggtagacttttttttt
tatcattagagagataaaactaaatgagggtgggcccacaaaactgagag
acccgtctaattcatcaaagcagtcagtaccataaggtctcacaccaaac
actgctacttcttggaagccagggctcagtagcctgctcggctatttaat
aaactggaacttttctaaccaaaatatttttttctaagcattggatcagg
taaatcaaagccttggctcactggctggaaagttaggaaaacatctgtat
ttactgattaaacttctttggccgtgttaatagaatccttgcataagcac
atcacttggtagaatttaacaaatttgttctggattacttttataaatag
aacaaacgaatactacatttaaaactaaagcggaatgttttgcacgataa
atgataaaaaggatggctttgcattccgagagtttcttaaacccaaagaa
gaaatatcaggttccccctaagtggaggggggcaaggtgcacctgtagga
gattaggagtggagtgtccggttttacataaataattgtattgtatcatg
aaattgtgaaacctgatttgagaacccaaccacacagcctcttaagtccc
accccccgcccagttcccaggtttttaaagagaaaaacttaaagtcgtca
gtatttttcaaaggtttctaactgagaaagaaagaaagaaagatagaaag
aaagaagaaagaaagaagaaagaaagaaagaaagaagaagaagaaagaag
ggagggaagggggagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174215936_174217076
seq2: B6Ng01-152B03.b_45_1185

seq1  GAATTCAGTGTCACGGTGGGGGAAGGGAGGAGATGGAGGATGGAGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCACGGTGGGGGAAGGGAGGAGATGGAGGATGGAGACAGA  50

seq1  GCATCAGCCGAGGTCACCAAAGCAGCTACAGGGTGAGAGAGGGAAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCCGAGGTCACCAAAGCAGCTACAGGGTGAGAGAGGGAAAGCTG  100

seq1  GGTGTCTGCAAGGAGCCCCCCAATACATCTGTGTCTGCACTCACTGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGCAAGGAGCCCCCCAATACATCTGTGTCTGCACTCACTGGCTG  150

seq1  GCCCCCTACCTTAGACACGGAGATGTTCTCTTGTCCAGCCTTGAAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTACCTTAGACACGGAGATGTTCTCTTGTCCAGCCTTGAAGACAG  200

seq1  CACGATTGCAGAGACCAGCGATCCGAGACAGGGCTGTCCATGTGGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTGCAGAGACCAGCGATCCGAGACAGGGCTGTCCATGTGGGGGAC  250

seq1  CGTTTGTCAAAAGTGGCCCCTGGGAAGAAAGGAGGGAGAAGCTTGGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTCAAAAGTGGCCCCTGGGAAGAAAGGAGGGAGAAGCTTGGCTCT  300

seq1  CCCTTAGAGCATTTCATACCCCAGGATCCCTCTTCTGCGTGGTCCCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGAGCATTTCATACCCCAGGATCCCTCTTCTGCGTGGTCCCTCGG  350

seq1  CAGGATCCATTTCCCGTCACCCTTTCCGGAGCACCCAAATCACCAGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCATTTCCCGTCACCCTTTCCGGAGCACCCAAATCACCAGACTG  400

seq1  GTCCTCTGTGGTGTCAGCCTCATGGATCTGGTTGTCAAACCACATGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGTGGTGTCAGCCTCATGGATCTGGTTGTCAAACCACATGTGAG  450

seq1  CCACTGTCATGCGGTTCTGGGTGAGGGTGCCCGTCTTGTCTGAGCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCATGCGGTTCTGGGTGAGGGTGCCCGTCTTGTCTGAGCAGATG  500

seq1  GTGGACGTGGAGCCCAGCGTCTCCACGGCCTCCAGGTTCTTCACCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACGTGGAGCCCAGCGTCTCCACGGCCTCCAGGTTCTTCACCAGGCA  550

seq1  GTTTTTGCGAGCCATGCGCTTGGCTGTCAGCGTCAGGCACACCTGGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCGAGCCATGCGCTTGGCTGTCAGCGTCAGGCACACCTGGCAGA  600

seq1  CAGAGAGGAGAATTAAAAGGGCCAAGTCGAGAGTGACAGGTGTCTATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGAGAATTAAAAGGGCCAAGTCGAGAGTGACAGGTGTCTATGAT  650

seq1  TCTTTCCCATTCGGAAGCTCTAATCCTTTTCTATTAATCCCACTCACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCATTCGGAAGCTCTAATCCTTTTCTATTAATCCCACTCACAAA  700

seq1  AGACTGGGTGGGACCTAGCAGGAAATAGCGACAGTTCAACTTTAGGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGTGGGACCTAGCAGGAAATAGCGACAGTTCAACTTTAGGCATC  750

seq1  TTAAATAGGTTCTTAGGCCGTATCTGTGGTAAACGCCCGGAAGAAAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGGTTCTTAGGCCGTATCTGTGGTAAACGCCCGGAAGAAAGTTC  800

seq1  ATGATATCTGACTCCAGAGCAGGTACAAAGATGTGGCAACCACCCACATG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGATATCTGACTCCAGAGCA-GTACAAAGATGTGGCAACCACCCACATG  849

seq1  AAAGGGACAACAGAAACTATGGATGAAAATGGGTTCCTCTGAGGGCAGCA  900
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGGGAC-ACAGAAACTATGGATGAAAAT-GGTTCCTCTGAGGGCAGCA  897

seq1  AGGAGAAAAGCTGGGGCTAGGGCTTGACAGTCACTGAGCTGCTGTGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAGCTGGGGCTAGGGCTTGACAGTCACTGAGCTGCTGTGAGGA  947

seq1  CAGGAGAACCAGGATAGTGACACATCACAGTGGCTGATGAAGGACAGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  CAGGAGAACCAGGATAGTGACACATCACAGTGGCTGATGAA-GACA-GGG  995

seq1  GATGGACAGAAGTATTCATTTCAGCAGCAGCAGCATT-AAGGATGAGAGC  1049
      ||||||||||||||||||||||||||||||||||||| ||||  || |||
seq2  GATGGACAGAAGTATTCATTTCAGCAGCAGCAGCATTAAAGGTGGAAAGC  1045

seq1  TGAGAAATGTCAATGG-ATTTGCTAGTT-AGTCACTGGTGACCTTTGAAA  1097
      |||  |||||| |||| |||||| |||| |||||||||||||||||||||
seq2  TGAAGAATGTCCATGGAATTTGC-AGTTAAGTCACTGGTGACCTTTGAAA  1094

seq1  GAGTCTTTATAGCACACGAGACAGG-ATGAACCCCA-GACT-GAGTC  1141
       |||||||||||||||||||| ||| ||||| |||| |||| |||||
seq2  AAGTCTTTATAGCACACGAGAAAGGAATGAAACCCACGACTGGAGTC  1141

seq1: chr1_174340036_174340856
seq2: B6Ng01-152B03.g_68_888 (reverse)

seq1  CCCTCCCTCCCCCTTCCCTCCCTTCTTTCT--TTGTTCTTTCTTTCTTTC  48
      ||||||||||||||||||||||||||||||  || |||||||||||||||
seq2  CCCTCCCTCCCCCTTCCCTCCCTTCTTTCTTCTTCTTCTTTCTTTCTTTC  50

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC  98
      |||| ||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TTTC-TTCTTTCTTTC-TTCTTTCTTTCTATCTTTCTTTCTTTCTTTCTC  98

seq1  AGTTAGAAACCTTTGAAAAATACTGACGACTTTAAGTTTTTCTCTTTAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAACCTTTGAAAAATACTGACGACTTTAAGTTTTTCTCTTTAAA  148

seq1  AACCTGGGAACTGGGCGGGGGGTGGGACTTAAGAGGCTGTGTGGTTGGGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGAACTGGGCGGGGGGTGGGACTTAAGAGGCTGTGTGGTTGGGT  198

seq1  TCTCAAATCAGGTTTCACAATTTCATGATACAATACAATTATTTATGTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATCAGGTTTCACAATTTCATGATACAATACAATTATTTATGTAA  248

seq1  AACCGGACACTCCACTCCTAATCTCCTACAGGTGCACCTTGCCCCCCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGACACTCCACTCCTAATCTCCTACAGGTGCACCTTGCCCCCCTCC  298

seq1  ACTTAGGGGGAACCTGATATTTCTTCTTTGGGTTTAAGAAACTCTCGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGGGGAACCTGATATTTCTTCTTTGGGTTTAAGAAACTCTCGGAA  348

seq1  TGCAAAGCCATCCTTTTTATCATTTATCGTGCAAAACATTCCGCTTTAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCCATCCTTTTTATCATTTATCGTGCAAAACATTCCGCTTTAGT  398

seq1  TTTAAATGTAGTATTCGTTTGTTCTATTTATAAAAGTAATCCAGAACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTAGTATTCGTTTGTTCTATTTATAAAAGTAATCCAGAACAAA  448

seq1  TTTGTTAAATTCTACCAAGTGATGTGCTTATGCAAGGATTCTATTAACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAATTCTACCAAGTGATGTGCTTATGCAAGGATTCTATTAACAC  498

seq1  GGCCAAAGAAGTTTAATCAGTAAATACAGATGTTTTCCTAACTTTCCAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGAAGTTTAATCAGTAAATACAGATGTTTTCCTAACTTTCCAGC  548

seq1  CAGTGAGCCAAGGCTTTGATTTACCTGATCCAATGCTTAGAAAAAAATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCCAAGGCTTTGATTTACCTGATCCAATGCTTAGAAAAAAATAT  598

seq1  TTTGGTTAGAAAAGTTCCAGTTTATTAAATAGCCGAGCAGGCTACTGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAGAAAAGTTCCAGTTTATTAAATAGCCGAGCAGGCTACTGAGC  648

seq1  CCTGGCTTCCAAGAAGTAGCAGTGTTTGGTGTGAGACCTTATGGTACTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCCAAGAAGTAGCAGTGTTTGGTGTGAGACCTTATGGTACTGA  698

seq1  CTGCTTTGATGAATTAGACGGGTCTCTCAGTTTTGTGGGCCCACCCTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGATGAATTAGACGGGTCTCTCAGTTTTGTGGGCCCACCCTCAT  748

seq1  TTAGTTTTATCTCTCTAATGATAAAAAAAAAAGTCTACCATGTAGATATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTATCTCTCTAATGATAAAAAAAAAAGTCTACCATGTAGATATG  798

seq1  TAACCCTAGCTTATTTTGAATTC  821
      |||||||||||||||||||||||
seq2  TAACCCTAGCTTATTTTGAATTC  821