BAC Information

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BAC

Clone NameB6Ng01-152F04
Chromosome1 (Build37)5 (Build37)
Map Location 167,412,605 - 167,413,10634,647,209 - 34,648,260
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44
Downstream geneSacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152F04.bB6Ng01-152F04.g
ACCDH947925DH947926
length1,0151,040
definitionDH947925|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F04, 5' end.DH947926|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(167,412,605 - 167,413,106)(34,647,209 - 34,648,260)
sequence
gaattccagggtagtcagaactatatgaaaccttgtctcaataacagaca
acaacccccacccccccacaaaacaaacaaacaaacaaacaaacaaacag
acaaaacccctaacggctggagagatagatagcttagtgattagaagcac
tggctgctcttccagaggaaccgggcttgacttccagcacccacacagca
gctcatcatcatctgtaactctagttccaagggaacctaacattcttctg
gcctccacaggtaccaagcacacatatagacacacatataggcaaaatat
ccataaacacaaaaaattaaaatcaagctgggcatggtcacatatgactt
taatccagcactcaggagacaggtaaatctgagggcagctagagaaaaag
acacaaattagtaaaatgtaggggaaaaaaaaaaaaagagataacactgt
aacagaaatgagtgctgggattaaagacatgaacccatactaccagcact
tggctgaaattcacaaaatcttaaggatacattccactaaattggaaaat
gcaaataaatgaatggattcctagatatatacaacatgccaagactaaag
aaataattcaaatagatctaaaaccaaccattagattgaaatagtagtaa
agttcccattagaaagattccagaaatagatggattcatacagaattcta
tccagatttcaaagaactaatgccaatactattttaattattccataaaa
tagaaaaagaaggcttttaaacacttctgagtctagtttcaccttgatac
tagataaaacaacaataacaaaagaaacttaaaagccaggtagggtgaca
cacacctttagttccaacatagaggtaggtgatctctgagtttaaggtca
gcttggtctacagagtgagttctaagacagccagggcgacacaaacaaac
cctatcttgaaaataaacaaacaaaaccaagaaacaaatcaacaatcaaa
gaaacactggagggg
gaattctctaaactggacaagaccctccaagctagggtgtgtttacagct
cctcaggtccaagagcacctgcaggtgattcaagcctcattacccctcag
ttaggggctgaaaacctgagactgtcccaaagagcagggctacctcatag
gacccttgcccctcctgaccagctgacagttctgtcctgtgtaaaggcac
cttccagctccctacagcagctgactccactaaaaagctggaaggcacgg
gccctgtgcctttcagtgtcaaagctttagatttggggaccagaagctgg
gaagccaccagcagaagcttgtagcactggtactctccagggactggctc
tgagccctctgaggacatcatagacctcattgtgcagcccctgactaggg
atgcaggctccatcttggtactgagatcagacactcactgtgaaggattg
agtgaaaacccaccttcccaggtctgagggctttccccaccctcctccag
caatgctatagttgcaggcttacggggcacaggaaatagcactcccagaa
ttatagattcccctgtaatggggcagggcgggtggcaggtagtcctccat
gtctctttgcaacatacagtccaggagtgagcaaggggcctttccaggcc
tagaagctggatgaacgtccatctgcagtaggcatgacaacagtatcaag
tctgctctggctcctatgaggggctggagcagcagtgggtggtgggtaaa
gctaccgtggagctgctaagggtttccccgcctcagttcctcagattctt
ctttaccccttgaacctgagctcatggatcaagacgagtggagcctcatc
tactaaacagccatgtgatggagaactggattgaccctctgttgaggtgg
tcagctgtggtcagctgtggggtcagctgtggcttttggtctctgaaaat
catcatccaagtgcctcaaagcatggtggggtgtgtctctccatcttctg
ctcacaagaactctgtgaaaatctagacatgtccaggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167412605_167413106
seq2: B6Ng01-152F04.b_448_964

seq1  ACAAATTAGTAAAATGT-------------------ACATA----TTAGC  27
      |||||||||||||||||                   | |||    |    
seq2  ACAAATTAGTAAAATGTAGGGGAAAAAAAAAAAAAGAGATAACACTGTAA  50

seq1  CAGATATG-GTGCT----------ACA--CAGCTGTAATCCCA--ACATG  62
      |||| ||| |||||          |||   | |  || | |||  || ||
seq2  CAGAAATGAGTGCTGGGATTAAAGACATGAACCCATACTACCAGCACTTG  100

seq1  G-GGAAGATCAGATCGTTTTTTAG-TACCTT---GTAAGTTTAAAGCCAT  107
      |  |||  ||| |   | ||   | ||| ||    ||| ||  ||   ||
seq2  GCTGAAATTCACAAAATCTTAAGGATACATTCCACTAAATTGGAA--AAT  148

seq1  CCTGAAAGAAA-GA--GTATTTCTTG-TATAGAGTCTCTCCCATG-----  148
       |  ||| ||| ||  | ||| || | |||| |     | ||| |     
seq2  GC--AAATAAATGAATGGATTCCTAGATATATACAACATGCCAAGACTAA  196

seq1  ----TTGGTTCACA-AGATTTAACTGAAGCCAGAAG--TG--AGAGCACT  189
           |  |||| | |||| |||    | |||  ||  ||  | || | |
seq2  AGAAATAATTCAAATAGATCTAAAACCAACCATTAGATTGAAATAGTAGT  246

seq1  -------CTATTA-----ATCCCAGCTATAGGGAAGCACTCAGTCCTGAA  227
             | ||||     || ||||  |||  || | | ||| | | |||
seq2  AAAGTTCCCATTAGAAAGATTCCAGAAATA--GATGGATTCA-TACAGAA  293

seq1  CTCT----AGACCTGCATGAAC-AATACAGCAAGACTTCCCGGGGAAGTG  272
       |||    |||  |  | |||| ||| |  ||| |||         | | 
seq2  TTCTATCCAGATTTCAAAGAACTAATGC--CAATACT---------ATTT  332

seq1  TGTGTGGGCTGGGGAAGGCAGGAGGTATGTTGATACATACCTGTAATTTA  322
      |   |         |   ||  |  ||    || | | |   |   ||||
seq2  TAATT---------ATTCCATAAAATA----GAAAAAGA--AGGCTTTTA  367

seq1  CACACTTGTGATGGGTGGAGGCATGAAGTTCAGGAGTTCAAGGCTCAGTT  372
       |||||| |||   ||  ||        ||||    || |         |
seq2  AACACTTCTGA---GTCTAG-------TTTCA--CCTTGA------TACT  399

seq1  ATATGAAAC-ACTGTCTCAAAAAAACAAAATAATAGGCTGGGTA--GTGA  419
      | || |||| ||  |   || |||| ||| | | | ||  ||||  ||||
seq2  AGATAAAACAACAAT---AACAAAAGAAACTTAAAAGCCAGGTAGGGTGA  446

seq1  TAGTGCACACCTTTAATCCCAGCACACAGAGGCAGAGGCAGGTGGATTTC  469
       |   |||||||||| | ||| ||         ||||| |||| ||| ||
seq2  CA---CACACCTTTAGTTCCAACA--------TAGAGGTAGGT-GATCTC  484

seq1  TGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAG  502
      ||||||| ||| |||| ||||||||||||||||
seq2  TGAGTTTAAGGTCAGCTTGGTCTACAGAGTGAG  517

seq1: chr5_34647209_34648260
seq2: B6Ng01-152F04.g_70_1109

seq1  GAATTCTCTAAACTGGACAAGACCCTCCAAGCTAGGGTGTGTTTACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAACTGGACAAGACCCTCCAAGCTAGGGTGTGTTTACAGCT  50

seq1  CCTCAGGTCCAAGAGCACCTGCAGGTGATTCAAGCCTCATTACCCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTCCAAGAGCACCTGCAGGTGATTCAAGCCTCATTACCCCTCAG  100

seq1  TTAGGGGCTGAAAACCTGAGACTGTCCCAAAGAGCAGGGCTACCTCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCTGAAAACCTGAGACTGTCCCAAAGAGCAGGGCTACCTCATAG  150

seq1  GACCCTTGCCCCTCCTGACCAGCTGACAGTTCTGTCCTGTGTAAAGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGCCCCTCCTGACCAGCTGACAGTTCTGTCCTGTGTAAAGGCAC  200

seq1  CTTCCAGCTCCCTACAGCAGCTGACTCCACTAAAAAGCTGGAAGGCACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCTCCCTACAGCAGCTGACTCCACTAAAAAGCTGGAAGGCACGG  250

seq1  GCCCTGTGCCTTTCAGTGTCAAAGCTTTAGATTTGGGGACCAGAAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGCCTTTCAGTGTCAAAGCTTTAGATTTGGGGACCAGAAGCTGG  300

seq1  GAAGCCACCAGCAGAAGCTTGTAGCACTGGTACTCTCCAGGGACTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACCAGCAGAAGCTTGTAGCACTGGTACTCTCCAGGGACTGGCTC  350

seq1  TGAGCCCTCTGAGGACATCATAGACCTCATTGTGCAGCCCCTGACTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTCTGAGGACATCATAGACCTCATTGTGCAGCCCCTGACTAGGG  400

seq1  ATGCAGGCTCCATCTTGGTACTGAGATCAGACACTCACTGTGAAGGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCTCCATCTTGGTACTGAGATCAGACACTCACTGTGAAGGATTG  450

seq1  AGTGAAAACCCACCTTCCCAGGTCTGAGGGCTTTCCCCACCCTCCTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAACCCACCTTCCCAGGTCTGAGGGCTTTCCCCACCCTCCTCCAG  500

seq1  CAATGCTATAGTTGCAGGCTTACGGGGCACAGGAAATAGCACTCCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTATAGTTGCAGGCTTACGGGGCACAGGAAATAGCACTCCCAGAA  550

seq1  TTATAGATTCCCCTGTAATGGGGCAGGGCGGGTGGCAGGTAGTCCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATTCCCCTGTAATGGGGCAGGGCGGGTGGCAGGTAGTCCTCCAT  600

seq1  GTCTCTTTGCAACATACAGTCCAGGAGTGAGCAAGGGGCC-TTCCAGGCC  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCTCTTTGCAACATACAGTCCAGGAGTGAGCAAGGGGCCTTTCCAGGCC  650

seq1  TAGAAGCTGGATGAACGTCCATCTGCAGTAGGCATGACAACAGTATCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTGGATGAACGTCCATCTGCAGTAGGCATGACAACAGTATCAAG  700

seq1  TCTGCTCTGGCTCCTATGAGGGGCTGGAGCAGCAGTGGGTGGT-GGTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGCTCTGGCTCCTATGAGGGGCTGGAGCAGCAGTGGGTGGTGGGTAAA  750

seq1  GCTACCGTGGAGCTGCTAAGGGTTTCCCCGCCTCAGTTCCTCAGATTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCGTGGAGCTGCTAAGGGTTTCCCCGCCTCAGTTCCTCAGATTCTT  800

seq1  CTTTAACCCCTTGAACCTGAGCTCATGGATCAAAGACGAGTGGAGCCTCA  848
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTT-ACCCCTTGAACCTGAGCTCATGGATC-AAGACGAGTGGAGCCTCA  848

seq1  TCTACGAAACAGCCCATGTGATGGAGAACTGGATTGACCCTCTGTTGAGG  898
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTACTAAACAG-CCATGTGATGGAGAACTGGATTGACCCTCTGTTGAGG  897

seq1  TGGGTCAGCTGTGGGTCAGCTGTGGGGTCAGCTGTGGCTTTTGGGTCTCT  948
      | |||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  T-GGTCAGCTGT-GGTCAGCTGTGGGGTCAGCTGTGGCTTTT-GGTCTCT  944

seq1  GAAAATCATCCATTCCAGGTGCCTCAGAGCATGGTGGGGTGTGTCTCCTC  998
      ||||||||||   |||| |||||||| ||||||||||||||||||||  |
seq2  GAAAATCATC--ATCCAAGTGCCTCAAAGCATGGTGGGGTGTGTCTCTCC  992

seq1  ATTCCTTTCCTGCTCACAGAAGCTCTGTGAGAGTCTAGATCATGTCCCAG  1048
      ||  |||  |||||||||  | |||||||| | |||||| ||||| ||||
seq2  AT--CTT--CTGCTCACAAGAACTCTGTGAAAATCTAGA-CATGT-CCAG  1036

seq1  GTTA  1052
      ||||
seq2  GTTA  1040