BAC Information

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BAC

Clone NameB6Ng01-152G09
Chromosome1 (Build37)
Map Location 15,101,998 - 15,260,681
singlet/doubletdoublet
Overlap geneLOC100039959
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
Downstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152G09.bB6Ng01-152G09.g
ACCDH947981DH947982
length973944
definitionDH947981|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G09, 5' end.DH947982|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,101,998 - 15,102,606)(15,259,736 - 15,260,681)
sequence
gaattctccttccaaaaagtgtaaggagctaggctccttaatgttcaggg
aaatatcaaatttattgctattttcccaggagtctggtttgacttatatc
actaatacagtattaatcaggttctctacagaaacaagactaatataatg
aatatgcactcaaaggacatttgttatattttgttatgtgattgagtctg
tgcaatccaacagtgcttgcctctctctggagaaagtgagaacacagtag
ctactcagcccatgaggcttgatgctttataagtcctcacctagttctaa
agacctgaaagtttttggagtctaccagtcttctggctacattggaagcc
caaggatgctcgattctgataccagtaaaggtatgcaacagcaggaatat
ggttgatgaacttttcagggagagccaaggcaagcagacataatgcaaag
cttttgcgttggatcccctgttaacaggtagattgatcatatttaagata
tgtcttcccacttcaaaacttttaagagaaaacaaaaacaaaaatcaaaa
acaaccctcagagatatgaacagtggcttgccctattttgattctagatc
caaaaaaataacaggaagaaacaattacttttcctttacatcaatggact
caattccccaacaaaaagagatagaataacatactggatacataaacagg
acccaacattttgatgcatacaggaaacccaccacagagacaaagacaga
aactacctcagaataaaagactggaaaacaattttccaagcaaacagccc
aaagaaagaagttggagtagccgttctaatatgaaacaaaatcaactttc
aacctaaagttatcaaaaaagaaaaggaggggcagtttatactcatcaac
tgtaaaatctaccaagatgaactcacattctgaacttctatgcttcaaat
acaagggcacccacattctgtaa
gaattcctgatctttccaagacttttaccatgaatgggtgttggatcttg
tcgaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggaatacgttgatggatttccgtatattaaacc
attcctgcatccctggaataaaacctacttggtcaggatgggtgattgct
ttaatgtgaagaaccacactcttaatgtggttagtgctaagtagtgtagg
ggtggagtctgaattagaggattctctttcctccttccttccttacaatt
atgtctctatggtggctcgcatggtgtcactggtgtcagatgagcttgtc
tacctgtggtaactataaggataatttcttttatattgtctaaagtcaat
gaatacagaaatcatgataactgcattcagttgcccacagaagtctagtg
tatatagccccatcttctgtattgtatactgcatagattgaaaatatcat
accattttcctatgagatatgataattaaaaacgtggcattagtgcatat
tcagtatataaagtgctaagttacacaaagacaacttcatacaagcatgt
tatgtactacaaagttaatcatttttgcagaaaattcatttgaaactctg
aaaggttactatatcagactccataaagttgttttctgaagaacaatgtg
tttctgtggaacatacaaaagtgaaaattatcggctctctgctcctccct
gttccagagacagcccgcatcttcttgtgcagtgccagccctgttccgta
gacaaatggtgaaggtcggtgtgaactaatttggccgtatttggctcctg
gccaccaggcttcttctgcttttgcaaattgtgagattgttgccatcaac
acccctccatgacctcaacacttggtctacatgttccagtatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15101998_15102606
seq2: B6Ng01-152G09.b_46_654

seq1  GAATTCTCCTTCCAAAAAGTGTAAGGAGCTAGGCTCCTTAATGTTCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCCAAAAAGTGTAAGGAGCTAGGCTCCTTAATGTTCAGGG  50

seq1  AAATATCAAATTTATTGCTATTTTCCCAGGAGTCTGGTTTGACTTATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAATTTATTGCTATTTTCCCAGGAGTCTGGTTTGACTTATATC  100

seq1  ACTAATACAGTATTAATCAGGTTCTCTACAGAAACAAGACTAATATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATACAGTATTAATCAGGTTCTCTACAGAAACAAGACTAATATAATG  150

seq1  AATATGCACTCAAAGGACATTTGTTATATTTTGTTATGTGATTGAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCACTCAAAGGACATTTGTTATATTTTGTTATGTGATTGAGTCTG  200

seq1  TGCAATCCAACAGTGCTTGCCTCTCTCTGGAGAAAGTGAGAACACAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCAACAGTGCTTGCCTCTCTCTGGAGAAAGTGAGAACACAGTAG  250

seq1  CTACTCAGCCCATGAGGCTTGATGCTTTATAAGTCCTCACCTAGTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGCCCATGAGGCTTGATGCTTTATAAGTCCTCACCTAGTTCTAA  300

seq1  AGACCTGAAAGTTTTTGGAGTCTACCAGTCTTCTGGCTACATTGGAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAAAGTTTTTGGAGTCTACCAGTCTTCTGGCTACATTGGAAGCC  350

seq1  CAAGGATGCTCGATTCTGATACCAGTAAAGGTATGCAACAGCAGGAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGCTCGATTCTGATACCAGTAAAGGTATGCAACAGCAGGAATAT  400

seq1  GGTTGATGAACTTTTCAGGGAGAGCCAAGGCAAGCAGACATAATGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGAACTTTTCAGGGAGAGCCAAGGCAAGCAGACATAATGCAAAG  450

seq1  CTTTTGCGTTGGATCCCCTGTTAACAGGTAGATTGATCATATTTAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCGTTGGATCCCCTGTTAACAGGTAGATTGATCATATTTAAGATA  500

seq1  TGTCTTCCCACTTCAAAACTTTTAAGAGAAAACAAAAACAAAAATCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCCACTTCAAAACTTTTAAGAGAAAACAAAAACAAAAATCAAAA  550

seq1  ACAACCCTCAGAGATATGAACAGTGGCTTGCCCTATTTTGATTCTAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCTCAGAGATATGAACAGTGGCTTGCCCTATTTTGATTCTAGATC  600

seq1  CAAAAAAAT  609
      |||||||||
seq2  CAAAAAAAT  609

seq1: chr1_15259736_15260681
seq2: B6Ng01-152G09.g_69_1012 (reverse)

seq1  TCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCGTT  50
      |||||||||||||||||||||| || ||||||||| ||| |||||| |||
seq2  TCATACTGGAACATGTAGACCAAGT-GTTGAGGTC-ATGGAGGGGT-GTT  47

seq1  GATGGCAACAATCTC-CACTTTGCCACTGCAGATGGCAGCCCTGGTGACC  99
      ||||||||||||||| || ||||| |  ||||| |  |  ||||||| ||
seq2  GATGGCAACAATCTCACAATTTGCAAAAGCAGAAG--AAGCCTGGTGGCC  95

seq1  AGGCGCCCAATACGGCCAAATTCGTTCACACCGACCTTCACCATTTTGTC  149
      ||| ||| |||||||||||||| |||||||||||||||||||| ||||||
seq2  AGGAGCCAAATACGGCCAAATTAGTTCACACCGACCTTCACCA-TTTGTC  144

seq1  TACGGGACGAGGCTGGCACTGCACAAGAAGATGC-GGCTGTCTCTGGAAC  198
      ||||| ||  |||||||||||||||||||||||| |||||||||||||||
seq2  TACGGAACAGGGCTGGCACTGCACAAGAAGATGCGGGCTGTCTCTGGAAC  194

seq1  AGGGAGGAGCAGAGAGCCGATAATTTTCAC-TTTGTATGTTCCACAGAAA  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGAGGAGCAGAGAGCCGATAATTTTCACTTTTGTATGTTCCACAGAAA  244

seq1  CACATTGTTCTTCAGAAAACAACTTTATGGAGTCTGATATAGTAACCTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTTCTTCAGAAAACAACTTTATGGAGTCTGATATAGTAACCTTT  294

seq1  CAGAGTTTCAAATGAATTTTCTGC-AAAATGATTAACTTTGTAGTACATA  346
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGAGTTTCAAATGAATTTTCTGCAAAAATGATTAACTTTGTAGTACATA  344

seq1  ACATGCTTGTATGAAGTTGTCTTTGTGTAACTTAGCACTTTATATACTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTGTATGAAGTTGTCTTTGTGTAACTTAGCACTTTATATACTGA  394

seq1  ATATGCACTAATGCCACGTTTTTAATTATCATATCTCATAGGAAAATGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACTAATGCCACGTTTTTAATTATCATATCTCATAGGAAAATGGT  444

seq1  ATGATATTTTCAATCTATGCAGTATACAATACAGAAGATGGGGCTATATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTCAATCTATGCAGTATACAATACAGAAGATGGGGCTATATA  494

seq1  CACTAGACTTCTGTGGGCAACTGAATGCAGTTATCATGATTTCTGTATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACTTCTGTGGGCAACTGAATGCAGTTATCATGATTTCTGTATTC  544

seq1  ATTGACTTTAGACAATATAAAAGAAATTATCCTTATAGTTACCACAGGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTTAGACAATATAAAAGAAATTATCCTTATAGTTACCACAGGTA  594

seq1  GACAAGCTCATCTGACACCAGTGACACCATGCGAGCCACCATAGAGACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTCATCTGACACCAGTGACACCATGCGAGCCACCATAGAGACAT  644

seq1  AATTGTAAGGAAGGAAGGAGGAAAGAGAATCCTCTAATTCAGACTCCACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAGGAAGGAAGGAGGAAAGAGAATCCTCTAATTCAGACTCCACC  694

seq1  CCTACACTACTTAGCACTAACCACATTAAGAGTGTGGTTCTTCACATTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTACTTAGCACTAACCACATTAAGAGTGTGGTTCTTCACATTAA  744

seq1  AGCAATCACCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCACCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGAAT  794

seq1  GGTTTAATATACGGAAATCCATCAACGTATTCCATTATATAAACAAACTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATATACGGAAATCCATCAACGTATTCCATTATATAAACAAACTC  844

seq1  AAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTCGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTCGA  894

seq1  CAAGATCCAACACCCATTCATGGTAAAAGTCTTGGAAAGATCAGGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCAACACCCATTCATGGTAAAAGTCTTGGAAAGATCAGGAATTC  944