BAC Information

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BAC

Clone NameB6Ng01-152K20
Chromosome1 (Build37)
Map Location 154,752,036 - 154,853,506
singlet/doubletdoublet
Overlap geneEG668097, Nmnat2
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7
Downstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K20.bB6Ng01-152K20.g
ACCDH948194DH948195
length1,104779
definitionDH948194|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K20, 5' end.DH948195|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,852,401 - 154,853,506)(154,752,036 - 154,752,691)
sequence
gaattctcaggctctcgctccccaagtctcctaccaacacgactcctaga
ggaagagcctgctaagagattcttccaaatgccagctatctgagaagtac
cagcaggaaggcatctgagaggtaccctgcgcagagctgagggtttgaac
atctgccaggccatcgatcaacatcaaatgacagcaaatttgcccacaat
ggaaaaacaggctgaagaagcaaaaagcaagtctataaaactggcaccat
gccctctctgtaaaaactgctctggggcttacagagagtagaccagtctc
tgagggtccctaaaacctaaataagcccggggttgtttttttcccaagtg
ttctttaattggaggaagcattttaatcatctgtgtcttaggacatactg
gatgattataagcattttcatgccttataagggaaagagaggctgagagc
tggggatgcttgcctagcacacatgaggccttgggctcactccccaggac
cagaagagaaaaaaagggtgggggtgaagccattctttatttatctgaca
tcacagtcctacactccagaaccccagccgtaaatcagagaggcctttcc
acttagtgataatccctaccctcaaagccacagtcttgagcacgtacagg
tactgttaaactccctgtgttgagtgtccgttatgggccatgagccgttg
caagccttcttgcatgcacacacttgttaaattgggaggacatcccagtg
aggtcacaggagcaaggttcaaacccaggcgtgtgatctcagcgtctggg
caggagaccactctcctctccctcccaggccttgctgattcctgagctgt
ccactcctgaccaggcattgctcactcccgagtatctgtccagccttctg
accttacctttgggtcagggaaatcttggcacaaattctgtctctacact
caccagtttcaaacagtgtttcaacctctaacttctcatctatgagacta
atacttgatgaggcatttgtggggaataaatgggggaaattaactcagtc
aaggacctttagaatggccctaataattttacaataattttgcaattatt
tatt
gaattccattatggcacacatacacacacaaatattttatctaccttccc
cattgatttcctccatactactttcttccctctcttccttgtgctctccc
cctcttagtcatccattctgctttcattgtcctgtgaatttccattagat
tctccactgcttccctccctacagaccttttcttcccttttcatggtcct
gtttgaactttcatgacacatacacatttttaatctagatgctgtgtatg
agagaaaatgttatttgtctttttcagtatggcttctttttcttaatatt
tgatctccagttccttgctttttcaaaaaaaaaaaaaaaaaaaaacctgg
ttccgagggggtttgcgattgaaaaaaaatccattatgtatattttctta
tctgctgatggacacataaactagttctatttcttagctataaggactag
tgcaacaataaatatggatgtgccagtatctctggtgtgttgactttaag
ttttgttcccaagaatggcagagctaacttttatggtagttttattttta
gtttcttgggggacttagacactgacttccagagaagctgggccagctta
cattaccacctacaaagcataagaattcctttactctccacatcatcacc
agcaggtctgttttcttctttctttttcttttccttttgtttggttgttt
tagttttctgtctgttttgttttgtttgtttgttacagactggttctctc
agtgtaggattggttgggcctggtctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154852401_154853506
seq2: B6Ng01-152K20.b_45_1148 (reverse)

seq1  AATAAATAATTGCAAAATTATTGTTAAAATATTAAGGGCCATCTAAAAGG  50
      |||||||||||||||||||||||| ||| |||| ||||||||   |||||
seq2  AATAAATAATTGCAAAATTATTGTAAAATTATT-AGGGCCATTCTAAAGG  49

seq1  TTCTTGACTGAGTTAATTT-CCCCATTTATTCCCCCACAAATGCCTCATC  99
      | ||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TCCTTGACTGAGTTAATTTCCCCCATTTATT-CCCCACAAATGCCTCATC  98

seq1  AAGTATTAGTCTCATAGATGAGAAGTTAGAGGTTGAAACACTGTTTGAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAGTCTCATAGATGAGAAGTTAGAGGTTGAAACACTGTTTGAAA  148

seq1  CTGGTGAGTGGTAGAGACAGAATTTGTGCCAAGATTTCCCTGACCCAAAG  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGT-GTAGAGACAGAATTTGTGCCAAGATTTCCCTGACCCAAAG  197

seq1  GTAAGGTCAGAAGGCTGGACAGATACTCGGGAGTGAGCAATGCCTGGTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTCAGAAGGCTGGACAGATACTCGGGAGTGAGCAATGCCTGGTCA  247

seq1  GGAGTGGACAGCTCAGGAATCAGCAAGGCCTGGGAGGGAGAGGAGAGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGACAGCTCAGGAATCAGCAAGGCCTGGGAGGGAGAGGAGAGTGG  297

seq1  TCTCCTGCCCAGACGCTGAGATCACACGCCTGGGTTTGAACCTTGCTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCCAGACGCTGAGATCACACGCCTGGGTTTGAACCTTGCTCCT  347

seq1  GTGACCTCACTGGGATGTCCTCCCAATTTAACAAGTGTGTGCATGCAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCACTGGGATGTCCTCCCAATTTAACAAGTGTGTGCATGCAAGA  397

seq1  AGGCTTGCAACGGCTCATGGCCCATAACGGACACTCAACACAGGGAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCAACGGCTCATGGCCCATAACGGACACTCAACACAGGGAGTTT  447

seq1  AACAGTACCTGTACGTGCTCAAGACTGTGGCTTTGAGGGTAGGGATTATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACCTGTACGTGCTCAAGACTGTGGCTTTGAGGGTAGGGATTATC  497

seq1  ACTAAGTGGAAAGGCCTCTCTGATTTACGGCTGGGGTTCTGGAGTGTAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTGGAAAGGCCTCTCTGATTTACGGCTGGGGTTCTGGAGTGTAGG  547

seq1  ACTGTGATGTCAGATAAATAAAGAATGGCTTCACCCCCACCCTTTTTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATGTCAGATAAATAAAGAATGGCTTCACCCCCACCCTTTTTTTC  597

seq1  TCTTCTGGTCCTGGGGAGTGAGCCCAAGGCCTCATGTGTGCTAGGCAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTCCTGGGGAGTGAGCCCAAGGCCTCATGTGTGCTAGGCAAGC  647

seq1  ATCCCCAGCTCTCAGCCTCTCTTTCCCTTATAAGGCATGAAAATGCTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGCTCTCAGCCTCTCTTTCCCTTATAAGGCATGAAAATGCTTAT  697

seq1  AATCATCCAGTATGTCCTAAGACACAGATGATTAAAATGCTTCCTCCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCCAGTATGTCCTAAGACACAGATGATTAAAATGCTTCCTCCAAT  747

seq1  TAAAGAACACTTGGGAAAAAAACAACCCCGGGCTTATTTAGGTTTTAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACACTTGGGAAAAAAACAACCCCGGGCTTATTTAGGTTTTAGGG  797

seq1  ACCCTCAGAGACTGGTCTACTCTCTGTAAGCCCCAGAGCAGTTTTTACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGAGACTGGTCTACTCTCTGTAAGCCCCAGAGCAGTTTTTACAG  847

seq1  AGAGGGCATGGTGCCAGTTTTATAGACTTGCTTTTTGCTTCTTCAGCCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATGGTGCCAGTTTTATAGACTTGCTTTTTGCTTCTTCAGCCTG  897

seq1  TTTTTCCATTGTGGGCAAATTTGCTGTCATTTGATGTTGATCGATGGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATTGTGGGCAAATTTGCTGTCATTTGATGTTGATCGATGGCCT  947

seq1  GGCAGATGTTCAAACCCTCAGCTCTGCGCAGGGTACCTCTCAGATGCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGTTCAAACCCTCAGCTCTGCGCAGGGTACCTCTCAGATGCCTT  997

seq1  CCTGCTGGTACTTCTCAGATAGCTGGCATTTGGAAGAATCTCTTAGCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGTACTTCTCAGATAGCTGGCATTTGGAAGAATCTCTTAGCAGG  1047

seq1  CTCTTCCTCTAGGAGTCGTGTTGGTAGGAGACTTGGGGAGCGAGAGCCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCTAGGAGTCGTGTTGGTAGGAGACTTGGGGAGCGAGAGCCTG  1097

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1104

seq1: chr1_154752036_154752691
seq2: B6Ng01-152K20.g_67_722

seq1  GAATTCCATTATGGCACACATACACACACAAATATTTTATCTACCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATGGCACACATACACACACAAATATTTTATCTACCTTCCC  50

seq1  CATTGATTTCCTCCATACTACTTTCTTCCCTCTCTTCCTTGTGCTCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTCCTCCATACTACTTTCTTCCCTCTCTTCCTTGTGCTCTCCC  100

seq1  CCTCTTAGTCATCCATTCTGCTTTCATTGTCCTGTGAATTTCCATTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGTCATCCATTCTGCTTTCATTGTCCTGTGAATTTCCATTAGAT  150

seq1  TCTCCACTGCTTCCCTCCCTACAGACCTTTTCTTCCCTTTTCATGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTGCTTCCCTCCCTACAGACCTTTTCTTCCCTTTTCATGGTCCT  200

seq1  GTTTGAACTTTCATGACACATACACATTTTTAATCTAGATGCTGTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACTTTCATGACACATACACATTTTTAATCTAGATGCTGTGTATG  250

seq1  AGAGAAAATGTTATTTGTCTTTTTCAGTATGGCTTCTTTTTCTTAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATGTTATTTGTCTTTTTCAGTATGGCTTCTTTTTCTTAATATT  300

seq1  TGATCTCCAGTTCCTTGCTTTTTCAAAAAAAAAAAAAAAAAAAAACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCAGTTCCTTGCTTTTTCAAAAAAAAAAAAAAAAAAAAACCTGG  350

seq1  TTCCGAGGGGGTTTGCGATTGAAAAAAAATCCATTATGTATATTTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGGGGGTTTGCGATTGAAAAAAAATCCATTATGTATATTTTCTTA  400

seq1  TCTGCTGATGGACACATAAACTAGTTCTATTTCTTAGCTATAAGGACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATGGACACATAAACTAGTTCTATTTCTTAGCTATAAGGACTAG  450

seq1  TGCAACAATAAATATGGATGTGCCAGTATCTCTGGTGTGTTGACTTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAATAAATATGGATGTGCCAGTATCTCTGGTGTGTTGACTTTAAG  500

seq1  TTTTGTTCCCAAGAATGGCAGAGCTAACTTTTATGGTAGTTTTATTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCCAAGAATGGCAGAGCTAACTTTTATGGTAGTTTTATTTTTA  550

seq1  GTTTCTTGGGGGACTTAGACACTGACTTCCAGAGAAGCTGGGCCAGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGGGGGACTTAGACACTGACTTCCAGAGAAGCTGGGCCAGCTTA  600

seq1  CATTACCACCTACAAAGCATAAGAATTCCTTTACTCTCCACATCATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACCTACAAAGCATAAGAATTCCTTTACTCTCCACATCATCACC  650

seq1  AGCAGG  656
      ||||||
seq2  AGCAGG  656