BAC Information

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BAC

Clone NameB6Ng01-153A10
Chromosome1 (Build37)
Map Location 40,777,077 - 40,925,315
singlet/doubletdoublet
Overlap geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Upstream gene4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4
Downstream geneLOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153A10.bB6Ng01-153A10.g
ACCDH948453DH948454
length870785
definitionDH948453|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A10, 5' end.DH948454|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,924,448 - 40,925,315)(40,777,077 - 40,777,945)
sequence
gaattctggggcatttattccaccataatgtgtgataatgaaggtgaggt
tcaaatccactctttctttgctcaccactcgctcctactttcaaagctct
catcttctgcttcttaagcaggggcaattgtggtttcttttaaagcaata
atcttccaacatcaatgacatccaaaggcctctgggaaggaagtggggac
aggggagaaatgcaaagcccagctttgagggagcacagaaactcagccag
aagggccatgaggctggagaagcgtttgaagtcatttgaggacgccctgt
ctcctcttggcaggtcactccattctttccgttctatttagtactccgtg
ctcgctacaatgtataagttcttaagcaaatgcagagggaggaaaagcta
atgtccctgatactacagtccctcagaatgacagcccagctagacttccc
ctgtggtgagagcaagagctgttcccccaaagaagctctgcatgaagaaa
ggggaatcactgtgccctttatttcagagaccaggacccagcgaggtact
ttccatagtgaccagccatgtactgatttgcaacatgggtgcctggcaca
gccaaagtaacatgatcatgttactgaaatagctgccaaatagcccttgc
gggagctgtcagcctactgtgagtgccagagaggaccagcttcagaagga
agactcataacagggttgcaaacactgctgatggacagcagatctggctt
ccatcatctccctgtgtttccccattcaaatggagcccccatttttaatg
gtcataaattccatttggaattgtgtttggcaaacctatccaaatcatgt
ctcgggggggggggggggga
gaattcacttgcaccttgccttctgaactcaggcaaggagtagggtgggt
gaggcaggtcctaggaccttcagagatctctctcttaagtacttagagtc
acatgatccagaattgggaaactggttagtttgtactagtggtatctgag
ggagacaagaatggcagccgattaactcctaatgaacagttctttcttgc
ccaactctttacacaacctaggaagacagccctaccactttgtaggtgaa
gctgagctggacatattaaagtgtgttcgcataacctcagtcctctcccc
attagctcttgccttcagattcatgactcatttgatagcatgcataggaa
caagcacggttctctcttcgttatattttactgcaaaagcagatcccgga
agtaaaggaaaggtttttttttttttttttttttttttttttttttttat
ctgaaaggatgtgcttcagggggacattattatggagaaaataatttgat
agttaataagtcatataattttagagcagctcctaagatggatttttttt
caaacagcaagttaatgtactcaaataactgaactcaattcatacattct
attatttattaacagtgattggtcattaacttttgggattaaaatttaac
taggaactgccataacagtgaaaacgtttttataactcattctaatttcc
ccaaacttcagggtttccccttggggacttatatttatatgtaaattttt
acccttgaaaagaggagattatggacctgggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40924448_40925315
seq2: B6Ng01-153A10.b_49_918 (reverse)

seq1  -TCCCCCCCCCCCCCCCGAGACATGATTTGGATAGGTTTGCCAAACACAA  49
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCCCCCCCGAGACATGATTTGGATAGGTTTGCCAAACACAA  50

seq1  TTCCAAATGGAA-TTATGACCATTAAAAATGGGGGCTCCATTTGAATGGG  98
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGGAATTTATGACCATTAAAAATGGGGGCTCCATTTGAATGGG  100

seq1  GAAACACAGGGAGATGATGGAAGCCAGATCTGCTGTCCATCAGCAGTGTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAGGGAGATGATGGAAGCCAGATCTGCTGTCCATCAGCAGTGTT  150

seq1  TGCAACCCTGTTATGAGTCTTCCTTCTGAAGCTGGTCCTCTCTGGCACTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCTGTTATGAGTCTTCCTTCTGAAGCTGGTCCTCTCTGGCACTC  200

seq1  ACAGTAGGCTGACAGCTCCCGCAAGGGCTATTTGGCAGCTATTTCAGTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGCTGACAGCTCCCGCAAGGGCTATTTGGCAGCTATTTCAGTAA  250

seq1  CATGATCATGTTACTTTGGCTGTGCCAGGCACCCATGTTGCAAATCAGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCATGTTACTTTGGCTGTGCCAGGCACCCATGTTGCAAATCAGTA  300

seq1  CATGGCTGGTCACTATGGAAAGTACCTCGCTGGGTCCTGGTCTCTGAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGGTCACTATGGAAAGTACCTCGCTGGGTCCTGGTCTCTGAAAT  350

seq1  AAAGGGCACAGTGATTCCCCTTTCTTCATGCAGAGCTTCTTTGGGGGAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCACAGTGATTCCCCTTTCTTCATGCAGAGCTTCTTTGGGGGAAC  400

seq1  AGCTCTTGCTCTCACCACAGGGGAAGTCTAGCTGGGCTGTCATTCTGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGCTCTCACCACAGGGGAAGTCTAGCTGGGCTGTCATTCTGAGG  450

seq1  GACTGTAGTATCAGGGACATTAGCTTTTCCTCCCTCTGCATTTGCTTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAGTATCAGGGACATTAGCTTTTCCTCCCTCTGCATTTGCTTAAG  500

seq1  AACTTATACATTGTAGCGAGCACGGAGTACTAAATAGAACGGAAAGAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATACATTGTAGCGAGCACGGAGTACTAAATAGAACGGAAAGAATG  550

seq1  GAGTGACCTGCCAAGAGGAGACAGGGCGTCCTCAAATGACTTCAAACGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCTGCCAAGAGGAGACAGGGCGTCCTCAAATGACTTCAAACGCT  600

seq1  TCTCCAGCCTCATGGCCCTTCTGGCTGAGTTTCTGTGCTCCCTCAAAGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCTCATGGCCCTTCTGGCTGAGTTTCTGTGCTCCCTCAAAGCT  650

seq1  GGGCTTTGCATTTCTCCCCTGTCCCCACTTCCTTCCCAGAGGCCTTTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGCATTTCTCCCCTGTCCCCACTTCCTTCCCAGAGGCCTTTGGA  700

seq1  TGTCATTGATGTTGGAAGATTATTGCTTTAAAAGAAACCACAATTGCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGATGTTGGAAGATTATTGCTTTAAAAGAAACCACAATTGCCCC  750

seq1  TGCTTAAGAAGCAGAAGATGAGAGCTTTGAAAGTAGGAGCGAGTGGTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGAAGCAGAAGATGAGAGCTTTGAAAGTAGGAGCGAGTGGTGAG  800

seq1  CAAAGAAAGAGTGGATTTGAACCTCACCTTCATTATCACACATTATGGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGAGTGGATTTGAACCTCACCTTCATTATCACACATTATGGTG  850

seq1  GAATAAATGCCCCAGAATTC  868
      ||||||||||||||||||||
seq2  GAATAAATGCCCCAGAATTC  870

seq1: chr1_40777077_40777945
seq2: B6Ng01-153A10.g_71_855

seq1  GAATTCACTTGCACCTTGCCTTCTGAACTCAGGCAAGGAGTAGGGTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCACCTTGCCTTCTGAACTCAGGCAAGGAGTAGGGTGGGT  50

seq1  GAGGCAGGTCCTAGGACCTTCAGAGATCTCTCTCTTAAGTACTTAGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTCCTAGGACCTTCAGAGATCTCTCTCTTAAGTACTTAGAGTC  100

seq1  ACATGATCCAGAATTGGGAAACTGGTTAGTTTGTACTAGTGGTATCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCCAGAATTGGGAAACTGGTTAGTTTGTACTAGTGGTATCTGAG  150

seq1  GGAGACAAGAATGGCAGCCGATTAACTCCTAATGAACAGTTCTTTCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAGAATGGCAGCCGATTAACTCCTAATGAACAGTTCTTTCTTGC  200

seq1  CCAACTCTTTACACAACCTAGGAAGACAGCCCTACCACTTTGTAGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTTTACACAACCTAGGAAGACAGCCCTACCACTTTGTAGGTGAA  250

seq1  GCTGAGCTGGACATATTAAAGTGTGTTCGCATAACCTCAGTCCTCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTGGACATATTAAAGTGTGTTCGCATAACCTCAGTCCTCTCCCC  300

seq1  ATTAGCTCTTGCCTTCAGATTCATGACTCATTTGATAGCATGCATAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTCTTGCCTTCAGATTCATGACTCATTTGATAGCATGCATAGGAA  350

seq1  CAAGCACGGTTCTCTCTTCGTTATATTTTACTGCAAAAGCAGATCCCGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACGGTTCTCTCTTCGTTATATTTTACTGCAAAAGCAGATCCCGGA  400

seq1  AGTAAAGGAAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGAAAGG-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA  449

seq1  TCTGAAAGGATGTGCTTCAGGTGGACATTATTATGGAGAAAATAATTTGA  500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTGAAAGGATGTGCTTCAGGGGGACATTATTATGGAGAAAATAATTTGA  499

seq1  TAGTTAATAAGTCATATAATTTTAGAGCAGCTCCTAAGATGGATTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATAAGTCATATAATTTTAGAGCAGCTCCTAAGATGGATTTTTTT  549

seq1  TCAGACAGCAAGTTAATGTACTCAAATAACTGAACTCAATTCATACATTC  600
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGCAAGTTAATGTACTCAAATAACTGAACTCAATTCATACATTC  599

seq1  TATTATTTATTAACAGTGATTGGTCATTAACTTTTGGTATTAAATTTTAA  650
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  TATTATTTATTAACAGTGATTGGTCATTAACTTTTGGGATTAAAATTTAA  649

seq1  CTAGGACCTGCCATAACAGTGAAGACG-TTTTATAACTCATTCTAATTTC  699
      |||||| |||||||||||||||| ||| ||||||||||||||||||||||
seq2  CTAGGAACTGCCATAACAGTGAAAACGTTTTTATAACTCATTCTAATTTC  699

seq1  CCCAGACTTCAGGTTTCCCCCT--GGGACTTATATTTATATGTAAA-TTT  746
      |||| |||||||| || |||||  |||||||||||||||||||||| |||
seq2  CCCAAACTTCAGGGTTTCCCCTTGGGGACTTATATTTATATGTAAATTTT  749

seq1  TACCCTTG-ATAGAGGAGATTATGGACCTGTGAATGTTGGAATTGTTGGA  795
      |||||||| | ||||||||||||||||||| ||| |              
seq2  TACCCTTGAAAAGAGGAGATTATGGACCTGGGAAAG--------------  785

seq1  AATGAGTCTATTTAATGCAAAAGGAAACTTAGAAGGAAATAAGAACACCT  845
                                                        
seq2  --------------------------------------------------  785

seq1  TGCTAGATTCCCTCTGAGGGAAAG  869
                              
seq2  ------------------------  785