BAC Information

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BAC

Clone NameB6Ng01-153H20
Chromosome1 (Build37)
Map Location 40,734,445 - 40,884,098
singlet/doubletdoublet
Overlap geneSlc9a2, Mfsd9, Tmem182
Upstream gene4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4
Downstream genePpia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153H20.bB6Ng01-153H20.g
ACCDH948788DH948789
length887819
definitionDH948788|Mus musculus domesticus DNA, BAC clone: B6Ng01-153H20, 5' end.DH948789|Mus musculus domesticus DNA, BAC clone: B6Ng01-153H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,734,445 - 40,735,333)(40,883,282 - 40,884,098)
sequence
gaattctttcaaagagtgatttgcacagttggtagggtatggagtcccag
gctgtttcttcacatggaagaaacagatacccaactcttctctaacccaa
actcagtatggctgctaacataggcatcctccagacgttgctgaagcaga
ggctggggaataaaactaatttttcgttgttccttttttgttgttgttgt
tttagtgttcaataatggctctaatctcaacactattatttttatgggca
tcttttctcttggtaatttaggattattttcctagctgctttctcttgta
tctagaaattgtactaaatgccttgccagtcttcatctttaaatagtccc
aggaccctggcctgcttgaaggcggtaggaatgattcttgtcaatggtct
ccactaactgcactgatgttctaacagaccattagaggtgagaggtgatg
gagccagagtatcactgagaagaattgtaagcactttagtgttacttgag
ggaaagagtctcaaacctgtaattataattcctggaaatatctagagctc
ttccagtgcggttaggtcctcacaacatcttggtagggaaggatagaggc
acaaagccctcagcatgagtcataaagcactagatagaaatgtgtctcgg
gatgccagagagaccttgtgtctctctccagtgtgagggtgcccaccatg
aggaagaactgacgcctcaagacttcttgtcaagccatacttgtattgct
ccggcacgtgtgtggcatctcatgttcctcaccctgtgcttggaatcaag
agtaagttgcatcaagcaggtcaacacttgtcaacacttttatgagagcc
gcgtagttgcgggaaatacaatgatcattctctgata
gaattctattctgagtgtcctgggatctggcaaggattctactctgcgta
cttggcatctttatttttctgtttcacatgacttgattctgcaaatccct
cacatcctgaaaaccatatctcttcaaaatattgaggcctttcattatgg
aacattattataaatacagagccttcttcaaatgtaactcgagatatttc
taccatcctaccaaggagaaaattgtttaagaattacagtgttgatttgc
cttgccatttctctctatgtgcatcataagatacacaacaacaaaaaaag
gtgatcaacaagtaaattgaacaccattcttgcagataccaaattgaaat
tctgcctcatgtcaggtgctgtggaaggtaatcaattgctagtgttgcac
tgtcaaatcaaaaatgcgtaaaacgtagagaaacgtgacagtctgtgagg
acaacggattgatggtactttatacagaatataggaaggatcccaggctc
cattttaacacattgcttaaagtttattgctaaacgagattttgagagga
ggagcaagcaggaagaaaacagggaaggcagtcagtcctgagacagcaca
aaacatggaagaggaaatggaatcggggaatacagcaggacctgccagtg
acttagtataaagatgcaagacaacggtaggcttgatgctagagaaggaa
cccgggaggaaacaagatatatttaattatgcttccttgtgaggtagtcg
gttttttaagtaacagttctgccctcatgtttatggctttaccccagaag
ttctctttttaaaaaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40734445_40735333
seq2: B6Ng01-153H20.b_35_921

seq1  GAATTCTTTCAAAGAGTGATTTGCACAGTTGGTAGGGTATGGAGTCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAAGAGTGATTTGCACAGTTGGTAGGGTATGGAGTCCCAG  50

seq1  GCTGTTTCTTCACATGGAAGAAACAGATACCCAACTCTTCTCTAACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTTCACATGGAAGAAACAGATACCCAACTCTTCTCTAACCCAA  100

seq1  ACTCAGTATGGCTGCTAACATAGGCATCCTCCAGACGTTGCTGAAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTATGGCTGCTAACATAGGCATCCTCCAGACGTTGCTGAAGCAGA  150

seq1  GGCTGGGGAATAAAACTAATTTTTCGTTGTTCCTTTTTTGTTGTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAATAAAACTAATTTTTCGTTGTTCCTTTTTTGTTGTTGTTGT  200

seq1  TTTAGTGTTCAATAATGGCTCTAATCTCAACACTATTATTTTTATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTTCAATAATGGCTCTAATCTCAACACTATTATTTTTATGGGCA  250

seq1  TCTTTTCTCTTGGTAATTTAGGATTATTTTCCTAGCTGCTTTCTCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTTGGTAATTTAGGATTATTTTCCTAGCTGCTTTCTCTTGTA  300

seq1  TCTAGAAATTGTACTAAATGCCTTGCCAGTCTTCATCTTTAAATAGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAATTGTACTAAATGCCTTGCCAGTCTTCATCTTTAAATAGTCCC  350

seq1  AGGACCCTGGCCTGCTTGAAGGCGGTAGGAATGATTCTTGTCAATGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTGGCCTGCTTGAAGGCGGTAGGAATGATTCTTGTCAATGGTCT  400

seq1  CCACTAACTGCACTGATGTTCTAACAGACCATTAGAGGTGAGAGGTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAACTGCACTGATGTTCTAACAGACCATTAGAGGTGAGAGGTGATG  450

seq1  GAGCCAGAGTATCACTGAGAAGAATTGTAAGCACTTTAGTGTTACTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGTATCACTGAGAAGAATTGTAAGCACTTTAGTGTTACTTGAG  500

seq1  GGAAAGAGTCTCAAACCTGTAATTATAATTCCTGGAAATATCTAGAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGTCTCAAACCTGTAATTATAATTCCTGGAAATATCTAGAGCTC  550

seq1  TTCCAGTGCGGTTAGGTCCTCACAACATCTTGGTAGGGAAGGATAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGCGGTTAGGTCCTCACAACATCTTGGTAGGGAAGGATAGAGGC  600

seq1  ACAAAGCCCTCAGCATGAGTCATAAAGCACTAGATAGAAATGTGTCTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCCTCAGCATGAGTCATAAAGCACTAGATAGAAATGTGTCTCGG  650

seq1  GATGCCAGAGAGACCTTGTGTCTCTCTCCAGTGTGAGGGTGCCCACCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGAGAGACCTTGTGTCTCTCTCCAGTGTGAGGGTGCCCACCATG  700

seq1  AGGAAGAACTGACGCCTCAAGACTTCTTGTCAAGCCATACTTGTATTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAACTGACGCCTCAAGACTTCTTGTCAAGCCATACTTGTATTGCT  750

seq1  CCGGCACGTGTGTGGCAATCTCATGTTCCTCACCCTGTGCTTGGAATCAA  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCGGCACGTGTGTGGC-ATCTCATGTTCCTCACCCTGTGCTTGGAATCAA  799

seq1  GAGTAAGTTGCATCAAGCAGGTCAACCACTTGTCAACACTTTTATGAGAG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGTAAGTTGCATCAAGCAGGTCAA-CACTTGTCAACACTTTTATGAGAG  848

seq1  CCGCGTAG-TGCGGGAAAATACAGTGATCAGTCTCTGAGA  889
      |||||||| |||||| ||||||| |||||| ||||||| |
seq2  CCGCGTAGTTGCGGG-AAATACAATGATCATTCTCTGATA  887

seq1: chr1_40883282_40884098
seq2: B6Ng01-153H20.g_68_886 (reverse)

seq1  TGATTTTTT-AAAAGAGAACTTCTGGGGTAAAGCCATAAAACATGAGGGG  49
      ||||||||| ||||||||||||||||||||||||||| |||||||| |||
seq2  TGATTTTTTAAAAAGAGAACTTCTGGGGTAAAGCCAT-AAACATGA-GGG  48

seq1  CAGAACTGTTACTT-AAAAACCGACTACCTCACAAGG-AGCATAATTAAA  97
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  CAGAACTGTTACTTAAAAAACCGACTACCTCACAAGGAAGCATAATTAAA  98

seq1  TATATCTTGTTTCCTCCCGGGTTCCTTCTCTAGCATCAAGCCTACCGTTG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTGTTTCCTCCCGGGTTCCTTCTCTAGCATCAAGCCTACCGTTG  148

seq1  TCTTGCATCTTTATACTAAGTCACTGGCAGGTCCTGCTGTATTCCCCGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATCTTTATACTAAGTCACTGGCAGGTCCTGCTGTATTCCCCGAT  198

seq1  TCCATTTCCTCTTCCATG-TTTGTGCTGTCTCAGGACTGACTGCCTTCCC  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCATTTCCTCTTCCATGTTTTGTGCTGTCTCAGGACTGACTGCCTTCCC  248

seq1  TGTTTTCTTCCTGCTTGCTCCTCCTCTCAAAATCTCGTTTAGCAATAAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTCCTGCTTGCTCCTCCTCTCAAAATCTCGTTTAGCAATAAAC  298

seq1  TTTAAGCAATGTGTTAAAATGGAGCCTGGGATCCTTCCTATATTCTGTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAATGTGTTAAAATGGAGCCTGGGATCCTTCCTATATTCTGTAT  348

seq1  AAAGTACCATCAATCCGTTGTCCTCACAGACTGTCACGTTTCTCTACGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCATCAATCCGTTGTCCTCACAGACTGTCACGTTTCTCTACGTT  398

seq1  TTACGCATTTTTGATTTGACAGTGCAACACTAGCAATTGATTACCTTCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCATTTTTGATTTGACAGTGCAACACTAGCAATTGATTACCTTCCA  448

seq1  CAGCACCTGACATGAGGCAGAATTTCAATTTGGTATCTGCAAGAATGGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTGACATGAGGCAGAATTTCAATTTGGTATCTGCAAGAATGGTG  498

seq1  TTCAATTTACTTGTTGATCACCTTTTTTTGTTGTTGTGTATCTTATGATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTACTTGTTGATCACCTTTTTTTGTTGTTGTGTATCTTATGATG  548

seq1  CACATAGAGAGAAATGGCAAGGCAAATCAACACTGTAATTCTTAAACAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAGAGAAATGGCAAGGCAAATCAACACTGTAATTCTTAAACAAT  598

seq1  TTTCTCCTTGGTAGGATGGTAGAAATATCTCGAGTTACATTTGAAGAAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTGGTAGGATGGTAGAAATATCTCGAGTTACATTTGAAGAAGG  648

seq1  CTCTGTATTTATAATAATGTTCCATAATGAAAGGCCTCAATATTTTGAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATTTATAATAATGTTCCATAATGAAAGGCCTCAATATTTTGAAG  698

seq1  AGATATGGTTTTCAGGATGTGAGGGATTTGCAGAATCAAGTCATGTGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGTTTTCAGGATGTGAGGGATTTGCAGAATCAAGTCATGTGAAA  748

seq1  CAGAAAAATAAAGATGCCAAGTACGCAGAGTAGAATCCTTGCCAGATCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATAAAGATGCCAAGTACGCAGAGTAGAATCCTTGCCAGATCCC  798

seq1  AGGACACTCAGAATAGAATTC  817
      |||||||||||||||||||||
seq2  AGGACACTCAGAATAGAATTC  819