BAC Information

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BAC

Clone NameB6Ng01-153M23
Chromosome1 (Build37)
Map Location 122,597,418 - 122,747,710
singlet/doubletdoublet
Overlap genenone
Upstream genePtpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153M23.bB6Ng01-153M23.g
ACCDH949017DH949018
length1,121131
definitionDH949017|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M23, 5' end.DH949018|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,597,418 - 122,598,563)(122,747,580 - 122,747,710)
sequence
gaattccatgtgggtgagggtatttgtaggataaattcctagaggaatct
ctgggcaacagtcatagcatttctaattgtgatagatattgtcttgctgc
cctttatgaaagtggtgataattgacatccccacagcaatgctggacttg
gttagttagcatccatctttggcccttctgtacaagccctataaaatgtg
actacaggctacagtttgcccataggatgccaattagtaaactctttcag
tttttgcccaaactgtagcagatctgtagctttggcctcagcatatgcac
actgtacacttagggacccaccttcaactcctaggtgcacaccctttcca
tctgacaggggcctataggcaatcttggcctcagagatgattggtgagtt
aagctagacaattacacttgggcgtgtatgtgcacgtgagcacactcaag
cacacaccaacttgcttggccttttcatgtagattctggggctcaaactc
aggtcctcatgcttttgagggaagttctttactgtcggggccgtctctgc
agccctctctgggttgcttactagatcagtcagccattattctgaagttg
ccatttgtagggatactgtgggcatggggatttgagggaacacttatact
ctaaaatcctttctgaaaagactttcagttgaaacaggagaataatgtag
agaaaggcagcatcctgggcatagcctcggaactctctgaccagataact
tctccagatttccaggtgactggatctggtcatgtctttgagaccttgcc
tttgtcattcctgccagctttttaattgtttaattaactttttttgttta
atttaaaaatgaaccaggatctcatgtagcccaggctagcctcaagctta
ccatgtagccaggatgacccagatcgtctgatcttctctctctacttaga
gggctgagttacaggcgtgtgcaccacaatcaagttctgcgtgctgaggg
accagtcaagcctgttatgttggcagcaccagcccatgagttcccaacgg
atctctcctcatcctctgatggaagacgttcctggtctaagacactcagc
accataatgtacctttaaata
atattaaattatcaaccctggaaaaaaactgagccataaggtagataatg
tctgccctgtgggagggagaggcaggttatagagtagcagggtgtgaggg
aaggctgaggtagaaagggggaggggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_122597418_122598563
seq2: B6Ng01-153M23.b_49_1169

seq1  GAATTCCATGTGGGTGAGGGTATTTGTAGGATAAATTCCTAGAGGAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGGGTGAGGGTATTTGTAGGATAAATTCCTAGAGGAATCT  50

seq1  CTGGGCAACAGTCATAGCATTTCTAATTGTGATAGATATTGTCTTGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAACAGTCATAGCATTTCTAATTGTGATAGATATTGTCTTGCTGC  100

seq1  CCTTTATGAAAGTGGTGATAATTGACATCCCCACAGCAATGCTGGACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGAAAGTGGTGATAATTGACATCCCCACAGCAATGCTGGACTTG  150

seq1  GTTAGTTAGCATCCATCTTTGGCCCTTCTGTACAAGCCCTATAAAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTAGCATCCATCTTTGGCCCTTCTGTACAAGCCCTATAAAATGTG  200

seq1  ACTACAGGCTACAGTTTGCCCATAGGATGCCAATTAGTAAACTCTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGCTACAGTTTGCCCATAGGATGCCAATTAGTAAACTCTTTCAG  250

seq1  TTTTTGCCCAAACTGTAGCAGATCTGTAGCTTTGGCCTCAGCATATGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCCAAACTGTAGCAGATCTGTAGCTTTGGCCTCAGCATATGCAC  300

seq1  ACTGTACACTTAGGGACCCACCTTCAACTCCTAGGTGCACACCCTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACACTTAGGGACCCACCTTCAACTCCTAGGTGCACACCCTTTCCA  350

seq1  TCTGACAGGGGCCTATAGGCAATCTTGGCCTCAGAGATGATTGGTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGGGGCCTATAGGCAATCTTGGCCTCAGAGATGATTGGTGAGTT  400

seq1  AAGCTAGACAATTACACTTGGGCGTGTATGTGCACGTGAGCACACTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGACAATTACACTTGGGCGTGTATGTGCACGTGAGCACACTCAAG  450

seq1  CACACACCAACTTGCTTGGCCTTTTCATGTAGATTCTGGGGCTCAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCAACTTGCTTGGCCTTTTCATGTAGATTCTGGGGCTCAAACTC  500

seq1  AGGTCCTCATGCTTTTGAGGGAAGTTCTTTACTGTCGGGGCCGTCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCATGCTTTTGAGGGAAGTTCTTTACTGTCGGGGCCGTCTCTGC  550

seq1  AGCCCTCTCTGGGTTGCTTACTAGATCAGTCAGCCATTATTCTGAAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTCTGGGTTGCTTACTAGATCAGTCAGCCATTATTCTGAAGTTG  600

seq1  CCATTTGTAGGGATACTGTGGGCATGGGGATTTGAGGGAACACTTATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTAGGGATACTGTGGGCATGGGGATTTGAGGGAACACTTATACT  650

seq1  CTAAAATCCTTTCTGAAAAGACTTTCAGTTGAAACAGGAGAATAATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCCTTTCTGAAAAGACTTTCAGTTGAAACAGGAGAATAATGTAG  700

seq1  AGAAAGGCAGCATCCTGGGCATAGCCTCGGAACTCTCTGACCAGATAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCAGCATCCTGGGCATAGCCTCGGAACTCTCTGACCAGATAACT  750

seq1  TCTCCAGATTTCCAGGTGACTGGATCTGGTCATGTCTTTGAGACCTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGATTTCCAGGTGACTGGATCTGGTCATGTCTTTGAGACCTTGCC  800

seq1  TTTGTCATTCCTGCCAGCTTTTTAATTGTTTAATTAACTTTTTTTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTCCTGCCAGCTTTTTAATTGTTTAATTAACTTTTTTTGTTTA  850

seq1  ATTTAAAAAATGAACCAGGATCTCATGTAGCCCAGGCTAGCCTCAAGCTT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTT-AAAAATGAACCAGGATCTCATGTAGCCCAGGCTAGCCTCAAGCTT  899

seq1  ACCATGTAGCCAAGGATGACCCAGATCGTCTGATTCTTCTCTCTCTACTT  950
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  ACCATGTAGCC-AGGATGACCCAGATCGTCTGA-TCTTCTCTCTCTACTT  947

seq1  TGAGAGGGCTGAGGTTACAGGCGTGTGCACCACATCCAGTTTCTGCGGTG  1000
        |||||||||| |||||||||||||||||||||  ||  |||||| |||
seq2  --AGAGGGCTGA-GTTACAGGCGTGTGCACCACAATCAAGTTCTGC-GTG  993

seq1  CTGAGGACCCAGTCCAGGGCCCTG-TATGTTGGGCAAGCACCCAGCCCAT  1049
      ||||||  |||||| ||   |||| ||||||||   |||| |||||||||
seq2  CTGAGGGACCAGTCAAG---CCTGTTATGTTGG--CAGCA-CCAGCCCAT  1037

seq1  GGAGTCACACAGTGAGTCCTCTTTTCATCTTTTTGTATGGAGAGACGTTC  1099
      |   || ||  |   |  ||||  ||||| | |   ||||| ||||||| 
seq2  GAGTTCCCAACG---GATCTCTCCTCATCCTCT--GATGGA-AGACGTT-  1080

seq1  CCTGGGTTATAAAGCACTCAAGCACACATAATGTACCTTTTAAAATA  1146
      |||||  | |||  ||||| ||||| ||||||||||||||  |||||
seq2  CCTGG--TCTAAGACACTC-AGCAC-CATAATGTACCTTT--AAATA  1121

seq1: chr1_122747580_122747710
seq2: B6Ng01-153M23.g_75_205 (reverse)

seq1  TCCCTCCCCTCCCCCTTTCTACCTCAGCCTTCCCTCACACCCTGCTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCTCCCCCTTTCTACCTCAGCCTTCCCTCACACCCTGCTACTC  50

seq1  TATAACCTGCCTCTCCCTCCCACAGGGCAGACATTATCTACCTTATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCTGCCTCTCCCTCCCACAGGGCAGACATTATCTACCTTATGGCT  100

seq1  CAGTTTTTTTCCAGGGTTGATAATTTAATAT  131
      |||||||||||||||||||||||||||||||
seq2  CAGTTTTTTTCCAGGGTTGATAATTTAATAT  131