BAC Information

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BAC

Clone NameB6Ng01-154A03
Chromosome1 (Build37)
Map Location 9,620,284 - 9,621,153
singlet/doubletsinglet
Overlap genenone
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik
Downstream geneMybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154A03.bB6Ng01-154A03.g
ACCDH949165DH949166
length1,236857
definitionDH949165|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A03, 5' end.DH949166|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaaacaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctacctattcaacattg
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactgtttgcagatgaaat
gatagtatgtatgtgaccctaaaaattccaccagagatgtcctaaacctg
ataagcagctttggtgaagtagctggatagaaaattaactcaaacaagtc
gatggcctttctctaaacaaagaataaataggctgagacagaaattaggg
aaacaacacccttctcaatagtcacaaataatataaaataccttggtgtg
actctaactaaagaagtgaaagatctgtatgataagaacttcaagtctct
gaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgct
catggattggcaggatcaatatagtcaaaatggctatcttgccaaaagca
atctacagattcaatgcaatccccatcaaaattccaactcaattcttcaa
cgaattagaaagagcaatctgcaaattcatctggaataacaaaaaaccta
ggatagcataaactcttctcaaggataaaagaacctctggtggaatcacc
atgcctgacctaaagctgtactacagagcaattgtgataaaaactgcatg
gtactggtatagcaacagacaagtaaaccaatggaatagaattgaagatc
cagaaatgaacccacacacctatggtcacttaatctttgacaagggagct
aaaaccatccagtgggaaaaagacagcattttcaacaatggtgctggcac
actggtggttatcatgtaaaagatgcaaattgatccattcctatctctta
tacttaaggtcatatctagtggatcaaggacttcccataacagagacagt
gaactttaagagaagaagttgggaaggcttgagatttggcacaggaaaat
tctaaatagacagcatgctgtgctgtagatcgaaattgacatggaacctc
ataaggtgaagctctcgtaggcaagaccgctataagacaaaggcaccatc
gattggaaggaatcttgctattccttaactgacatg
gaattccttctggtatgtctacaaagtgacaagggtacaggtccacctgt
gtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaatgcaa
gatctttgagttttgtttttatttttaaagactttatgtttcattgtggg
tgtgtagagggctctctcctccctgcctccacactgtccctgctcctctg
caaggacagagaattttcatggaatagtctcctggatttatggccgtgag
gcttgtgtgtgagactacatagcctgctttcctggtgaggtcactgtttc
ttgagttattgtcttgctttacttggcctgcatgaataacaagaatgtgg
tgcagagggcttatttatgaagtaccaaatctctgcctggttatacctta
ccaagcaagcttcccatcagacctgactcctcaggagcactttagtccta
gggtctggtttgaagtctagtgaggctaaatgagcagggctgggccttct
tcctccgagttggagcagacagacaaaagcctgtggtctcctaagccaat
gcactttgtaggtttcagttgaggactaattttgctggtagggaatgcag
gcaggaggccaaaggcagcagttggcagcaagtagactcttttgaattta
aaagagtcgtcaccacccacatcttgcttctgagccaagcaagggtcact
ggcccggactgacctggacactgggtgaccacctggggctgcaggatcag
ccaaatgctacagtgggatatggagagcttgtgtcagccgccctgagcct
tcccctgccacctctttgagagagaccctggacctggcttcagaaatgat
tctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_9620284_9621153
seq2: B6Ng01-154A03.g_67_923 (reverse)

seq1  AAATAGAATCATTTCCTGAGCCAGGGTCCAGGGTTCTCTCTCAGAAGAAG  50
      |||||||||||||||   ||||| ||||||||| ||||||||| ||| ||
seq2  AAATAGAATCATTTCTGAAGCCA-GGTCCAGGG-TCTCTCTCA-AAG-AG  46

seq1  GTGGGCAGGGGAAGGGCTCCAGGGCGGCTGAACACAAGGCTCTCCATTTC  100
      || |||||||||| |||| ||||||||||| |||||| ||||||||| ||
seq2  GT-GGCAGGGGAA-GGCT-CAGGGCGGCTG-ACACAA-GCTCTCCATATC  91

seq1  CCACTGTAGCATTTGGGCTGATCCTGCAGCCCCAGGTGGTCACCCAGTGT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCACTGTAGCATTT-GGCTGATCCTGCAGCCCCAGGTGGTCACCCAGTGT  140

seq1  GCCAGGTCAGTCCGGGCCAGTGACCCTTGCTTGGCTCAGAAGCAAGATGT  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCAGGTCAGTCCGGGCCAGTGACCCTTGCTTGGCTCAGAAGCAAGATGT  189

seq1  GGGTGGTGACGACTCTTTTGAATTCAAAAGAGTCTACTTGCTGCCAACTG  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGTGGTGACGACTCTTTTAAATTCAAAAGAGTCTACTTGCTGCCAACTG  239

seq1  CTGCCTTTGGCCTCCTGCCTGCATTCCCTACCAGCAAAATTAGTCCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTGGCCTCCTGCCTGCATTCCCTACCAGCAAAATTAGTCCTCAA  289

seq1  CTGAAACCTACAAAGTGCATTGGCTTAGGAGACCACAGGCTTTTGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTACAAAGTGCATTGGCTTAGGAGACCACAGGCTTTTGTCTGT  339

seq1  CTGCTCCAACTCGGAGGAAGAAGGCCCAGCCCTGCTCATTTAGCCTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAACTCGGAGGAAGAAGGCCCAGCCCTGCTCATTTAGCCTCACT  389

seq1  AGACTTCAAACCAGACCCTAGGACTAAAGTGCTCCTGAGGAGTCAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAAACCAGACCCTAGGACTAAAGTGCTCCTGAGGAGTCAGGTCT  439

seq1  GATGGGAAGCTTGCTTGGTAAGGTATAACCAGGCAGAGATTTGGTACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAGCTTGCTTGGTAAGGTATAACCAGGCAGAGATTTGGTACTTC  489

seq1  ATAAATAAGCCCTCTGCACCACATTCTTGTTATTCATGCAGGCCAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAGCCCTCTGCACCACATTCTTGTTATTCATGCAGGCCAAGTAA  539

seq1  AGCAAGACAATAACTCAAGAAACAGTGACCTCACCAGGAAAGCAGGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACAATAACTCAAGAAACAGTGACCTCACCAGGAAAGCAGGCTAT  589

seq1  GTAGTCTCACACACAAGCCTCACGGCCATAAATCCAGGAGACTATTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCACACACAAGCCTCACGGCCATAAATCCAGGAGACTATTCCAT  639

seq1  GAAAATTCTCTGTCCTTGCAGAGGAGCAGGGACAGTGTGGAGGCAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCTCTGTCCTTGCAGAGGAGCAGGGACAGTGTGGAGGCAGGGAG  689

seq1  GAGAGAGCCCTCT---TATCTACAGAGATCTCCCTTTATGCCTCAGAAAT  747
      |||||||||||||    | | |||  ||    | |  |  | | | ||||
seq2  GAGAGAGCCCTCTACACACCCACAATGA--AACATAAAGTCTTTAAAAAT  737

seq1  GAAAGGACACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACA  797
       |||  |||   |||      |||  |  |||||||||||||||||||||
seq2  AAAA--ACAAAACTC-AAAGATCTTGCATTCTCTCTCTCACACACACACA  784

seq1  CACACACACACACACCCACACACACAGGTGGACCTGTACCCTTGTCACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCCACACACACAGGTGGACCTGTACCCTTGTCACTT  834

seq1  TGTAGACATACCAGAAGGAATTC  870
      |||||||||||||||||||||||
seq2  TGTAGACATACCAGAAGGAATTC  857