BAC Information

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BAC

Clone NameB6Ng01-154C17
Chromosome1 (Build37)
Map Location 113,303,267 - 113,304,399
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C17.bB6Ng01-154C17.g
ACCDH949288DH949289
length1,1171,228
definitionDH949288|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C17, 5' end.DH949289|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacattgattattttattgatagaggacttttctaagaaacatat
gaacagaatttctaatcatgataggaaagacaaaaaaataaataaataaa
cctttgaaaccaaaggtttcaaaatgaaccaaaccaaacaaaataaaaca
gacaaacaaaaacaaaacaaaatgtgaactgagacaaaagaaaacatttg
tctaaaattgatatcaatgaaccagtgagtttactgagatttcttacagt
gatttaatattagttatatcaccaagacatcccattggtcaattagttac
agtttcattagagaatatgtatcttagttaaatgcttttgtaaaatgccc
caacttcatcaatctctatggaacaagaggggtttcatgagtatccaatg
aatgcttctgtgccttgtaattcctatgaacccagtgatcctgttgagct
tttgtttttcccccaaatcaggtattcataaggtgtttcttaagaattct
cctaagagaggatataactaaccctgcagagatataatgacggataccca
agtggccctctctcagaatacagtgggattagaaactcaaggggggattg
tggaaggggatgcttgggaggtgggcagtgagcaagatataatgtgaatt
taaaaataaaatctcccaggagcgatcataagctgctttgataaatgatt
tcaacatcccagcaaagtatttatgcagttctaattaattcccaacagcc
caaaatctacacctcatggatggattaggtttctatgccctgaatacttt
acaatggctataatttacaacacatgacactttgagtaacacactcaaat
catatgcaaactttcatacacttgaagcaattggaataattaatttcaat
tttctcttacattctacataacattacttatcactatatgattgctctaa
cttcattatacagaatttatctatagtaccacctctattgatcacatttt
ccatccttgtatatcagttccaccacacagcagcacatattacattttaa
tcttctagattttgtactattttaagttataatgtcaatacagaaaaaga
aaacgtactggatattt
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacaaagatggatttttgtatattaaacc
atccctgcatccctggaataaaacctacttgatcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgatgatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggcttttcttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtccctgtgccctctagtgagtctagctaatggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccatctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctcctctcccgtttctt
cttggaggcactcagaagctctggagtttcctcttagaaatgctttcatt
gtgtcccaaaggttgggtacgtgtggcttcatttcataaactctaaagtc
taatttctttctttatcctcccttgaccagggatcatgagaaggggttgt
tcagttcacgggagtgtgcttcattttttttttggtatggagaatgcctt
agcctggggatcgagaactgtacattcaatgaacttagcgcttgactatg
gccattggaggcacgagtggtctagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113303267_113304399
seq2: B6Ng01-154C17.b_48_1164 (reverse)

seq1  AAATATCCAGTACGTTTTCTTTTTTCTGTATTGACATATATTAAACTAAA  50
      ||||||||||||||||||| ||||||||||||||||| |||  |||| ||
seq2  AAATATCCAGTACGTTTTC-TTTTTCTGTATTGACAT-TAT--AACTTAA  46

seq1  AATAGTTACAAAATTCTAAGAAGATTAAAATGGTAATTATTGTGCTGCTG  100
      ||||| ||||||| ||| ||||||||||||| |||||   ||||||||||
seq2  AATAG-TACAAAA-TCT-AGAAGATTAAAAT-GTAAT--ATGTGCTGCTG  90

seq1  GTGGTGGTGGAACTGATATAACAAGGATGGAAAATGTGATCAATAGAGGT  150
         |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  --TGTGGTGGAACTGATAT-ACAAGGATGGAAAATGTGATCAATAGAGGT  137

seq1  GGTACTAATAGATAAATTCTTGTATAATGAAGTTAGAGCAATCATATAGT  200
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTACT-ATAGATAAATTC-TGTATAATGAAGTTAGAGCAATCATATAGT  185

seq1  GATAAGTAATGTTATGTAGAATGTAAGAGAAAATTGAAATTAATTATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTAATGTTATGTAGAATGTAAGAGAAAATTGAAATTAATTATTCC  235

seq1  AATTTGCTTCAAGTGTATGAAAGTTTGCATATGATTTGAGTGTGTTACTC  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTGCTTCAAGTGTATGAAAGTTTGCATATGATTTGAGTGTGTTACTC  284

seq1  AAAGTGTCATGTGTTGTAAATTATAGCCATTGTAAAGTATTCAGGGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCATGTGTTGTAAATTATAGCCATTGTAAAGTATTCAGGGCATA  334

seq1  GAAACCTAATCCATCCATGAGGTGTAGATTTTGGGCTGTTGGGAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTAATCCATCCATGAGGTGTAGATTTTGGGCTGTTGGGAATTAAT  384

seq1  TAGAACTGCATAAATACTTTGCTGGGATGTTGAAATCATTTATCAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGCATAAATACTTTGCTGGGATGTTGAAATCATTTATCAAAGCA  434

seq1  GCTTATGATCGCTCCTGGGAGATTTTATTTTTAAATTCACATTATATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGATCGCTCCTGGGAGATTTTATTTTTAAATTCACATTATATCTT  484

seq1  GCTCACTGCCCACCTCCCAAGCATCCCCTTCCACAATCCCCCCTTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGCCCACCTCCCAAGCATCCCCTTCCACAATCCCCCCTTGAGTT  534

seq1  TCTAATCCCACTGTATTCTGAGAGAGGGCCACTTGGGTATCCGTCATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCCCACTGTATTCTGAGAGAGGGCCACTTGGGTATCCGTCATTAT  584

seq1  ATCTCTGCAGGGTTAGTTATATCCTCTCTTAGGAGAATTCTTAAGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCAGGGTTAGTTATATCCTCTCTTAGGAGAATTCTTAAGAAACA  634

seq1  CCTTATGAATACCTGATTTGGGGGAAAAACAAAAGCTCAACAGGATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGAATACCTGATTTGGGGGAAAAACAAAAGCTCAACAGGATCACT  684

seq1  GGGTTCATAGGAATTACAAGGCACAGAAGCATTCATTGGATACTCATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATAGGAATTACAAGGCACAGAAGCATTCATTGGATACTCATGAA  734

seq1  ACCCCTCTTGTTCCATAGAGATTGATGAAGTTGGGGCATTTTACAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTTGTTCCATAGAGATTGATGAAGTTGGGGCATTTTACAAAAGC  784

seq1  ATTTAACTAAGATACATATTCTCTAATGAAACTGTAACTAATTGACCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTAAGATACATATTCTCTAATGAAACTGTAACTAATTGACCAAT  834

seq1  GGGATGTCTTGGTGATATAACTAATATTAAATCACTGTAAGAAATCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTCTTGGTGATATAACTAATATTAAATCACTGTAAGAAATCTCAG  884

seq1  TAAACTCACTGGTTCATTGATATCAATTTTAGACAAATGTTTTCTTTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCACTGGTTCATTGATATCAATTTTAGACAAATGTTTTCTTTTGT  934

seq1  CTCAGTTCACATTTTGTTTTGTTTTTGTTTGTCTGTTTTATTTTGTTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCACATTTTGTTTTGTTTTTGTTTGTCTGTTTTATTTTGTTTGG  984

seq1  TTTGGTTCATTTTGAAACCTTTGGTTTCAAAGGTTTATTTATTTATTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCATTTTGAAACCTTTGGTTTCAAAGGTTTATTTATTTATTTTT  1034

seq1  TTGTCTTTCCTATCATGATTAGAAATTCTGTTCATATGTTTCTTAGAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTCCTATCATGATTAGAAATTCTGTTCATATGTTTCTTAGAAAA  1084

seq1  GTCCTCTATCAATAAAATAATCAATGTGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  GTCCTCTATCAATAAAATAATCAATGTGAATTC  1117