BAC Information

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BAC

Clone NameB6Ng01-154F22
Chromosome1 (Build37)
Map Location 20,522,019 - 20,523,122
singlet/doubletsinglet
Overlap genePkhd1
Upstream genenone
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F22.bB6Ng01-154F22.g
ACCDH949434DH949435
length1,09783
definitionDH949434|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F22, 5' end.DH949435|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattttcactcacatataagttgatagtagtatagatgtctaag
acacataaatgtactctaaaattttgtcttaaatattaaaaaaaaccagt
tttgggatttgaagtgatggccagtgattacaatcacttgttgctcttat
agaggactgggttcagtccccagctcacattggtctgtaattccagtttc
agaggatctgtcatatcttcttctggcctccatgggcacagaatacagtg
gcacacagacatacacataggcaaaatacccatgtaatggaatacatgtc
acatgaaagcagaagacgtggctatttgagagaggtagatccagcaagag
ggtaggaagaaggatagactgttgaaggacctgggaagggaaatgaataa
gaacaaagtaaaatgacatacagtattaaaaatgttgtatttaaacccat
gactctatgtggtaacttaaaaacaaaatcagtagaaaaaaatatttttt
ccacataggcaatgaaaggaaactacagaaagaggtgtgagacactgaaa
gcagactacccttatgccagattttaaaagttaaattacctctgaattat
aggtgcactttaacttttcttactttgttttttttttttttttcaaaatg
atttaagaacctttttcttgttgcttgttactgacagccttgaaaagtaa
ttcttaggactattgtttttgagtgttttatctacacccaattgtagtca
gggaagtctgaatgaaagatactagttcaagaagaactcacaactcaaat
aacctataataaaactgtttattataataatttaccttaacaccatgcta
attagataatgtaaagttttttgttgtttgtttgtttgtttgtttgcttg
ggtttgggttgggtttcttgaatcagatgactcccgaggatgttcggcta
tttctggcttggtaacatatgtcagaataatggagtagctagtatctgtc
caggtagtttaagaaatatattttttaaagagaatattttatgcttaaaa
agaatatacctgaaactagatgtgctaatcacactatgatgaagcat
cttggtcctatgaaggctcaatagatgccccagtataggggaactgaggg
cagggaggcgggtgtgggtgggtggaagaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20522019_20523122
seq2: B6Ng01-154F22.b_46_1142 (reverse)

seq1  ATGCTTCAATCATAGGTGTGATTTAGCACATCTGGGTTTCAAGTATA-TC  49
      ||||||| |||||| |||||| |||||||||||  |||||| ||||| ||
seq2  ATGCTTC-ATCATA-GTGTGA-TTAGCACATCT-AGTTTCAGGTATATTC  46

seq1  TTTTTATAGCATAAAATATTCTCTTTAAAAATAATA--TCTTAAACTACC  97
      |||||| ||||||||||||||||||||||||  |||  ||||||||||||
seq2  TTTTTA-AGCATAAAATATTCTCTTTAAAAAATATATTTCTTAAACTACC  95

seq1  TGGAACAGATACTAGCTACTCCATTATGTCTGACATATGTTACCAAGCCA  147
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGG-ACAGATACTAGCTACTCCATTAT-TCTGACATATGTTACCAAGCCA  143

seq1  GAAATAGCCGAACATCCTCGGGGAGTCATCCTGATTCAAGAAAACCAAAC  197
      ||||||||||||||||||| ||||||||| ||||||||||||| |||| |
seq2  GAAATAGCCGAACATCCTC-GGGAGTCAT-CTGATTCAAGAAACCCAACC  191

seq1  CAAACCCAAGCAAACAAACAAACAAACAAACAAACAAAAAACTTTACATT  247
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAACCCAAGCAAACAAACAAACAAACAAAC-AACAAAAAACTTTACATT  240

seq1  ATCTAATTAGCATGGTGTTAAGGTAAATTATTATAATAAACAGTTTTATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTAGCATGGTGTTAAGGTAAATTATTATAATAAACAGTTTTATT  290

seq1  ATAGGTTATTTGAGTTGTGAGTTCTTCTTGAACTAGTATCTTTCATTCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTATTTGAGTTGTGAGTTCTTCTTGAACTAGTATCTTTCATTCAG  340

seq1  ACTTCCCTGACTACAATTGGGTGTAGATAAAACACTCAAAAACAATAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTGACTACAATTGGGTGTAGATAAAACACTCAAAAACAATAGTC  390

seq1  CTAAGAATTACTTTTCAAGGCTGTCAGTAACAAGCAACAAGAAAAAGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATTACTTTTCAAGGCTGTCAGTAACAAGCAACAAGAAAAAGGTT  440

seq1  CTTAAATCATTTTGAAAAAAAAAAAAAAAACAAAGTAAGAAAAGTTAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCATTTTGAAAAAAAAAAAAAAAACAAAGTAAGAAAAGTTAAAG  490

seq1  TGCACCTATAATTCAGAGGTAATTTAACTTTTAAAATCTGGCATAAGGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTATAATTCAGAGGTAATTTAACTTTTAAAATCTGGCATAAGGGT  540

seq1  AGTCTGCTTTCAGTGTCTCACACCTCTTTCTGTAGTTTCCTTTCATTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTTTCAGTGTCTCACACCTCTTTCTGTAGTTTCCTTTCATTGCC  590

seq1  TATGTGGAAAAAATATTTTTTTCTACTGATTTTGTTTTTAAGTTACCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAAAAAATATTTTTTTCTACTGATTTTGTTTTTAAGTTACCACA  640

seq1  TAGAGTCATGGGTTTAAATACAACATTTTTAATACTGTATGTCATTTTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCATGGGTTTAAATACAACATTTTTAATACTGTATGTCATTTTAC  690

seq1  TTTGTTCTTATTCATTTCCCTTCCCAGGTCCTTCAACAGTCTATCCTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTATTCATTTCCCTTCCCAGGTCCTTCAACAGTCTATCCTTCT  740

seq1  TCCTACCCTCTTGCTGGATCTACCTCTCTCAAATAGCCACGTCTTCTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCTCTTGCTGGATCTACCTCTCTCAAATAGCCACGTCTTCTGCT  790

seq1  TTCATGTGACATGTATTCCATTACATGGGTATTTTGCCTATGTGTATGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGACATGTATTCCATTACATGGGTATTTTGCCTATGTGTATGTC  840

seq1  TGTGTGCCACTGTATTCTGTGCCCATGGAGGCCAGAAGAAGATATGACAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCACTGTATTCTGTGCCCATGGAGGCCAGAAGAAGATATGACAG  890

seq1  ATCCTCTGAAACTGGAATTACAGACCAATGTGAGCTGGGGACTGAACCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGAAACTGGAATTACAGACCAATGTGAGCTGGGGACTGAACCCA  940

seq1  GTCCTCTATAAGAGCAACAAGTGATTGTAATCACTGGCCATCACTTCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTATAAGAGCAACAAGTGATTGTAATCACTGGCCATCACTTCAAA  990

seq1  TCCCAAAACTGGTTTTTTTTAATATTTAAGACAAAATTTTAGAGTACATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAACTGGTTTTTTTTAATATTTAAGACAAAATTTTAGAGTACATT  1040

seq1  TATGTGTCTTAGACATCTATACTACTATCAACTTATATGTGAGTGAAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCTTAGACATCTATACTACTATCAACTTATATGTGAGTGAAAAT  1090

seq1  TGAATTC  1104
      |||||||
seq2  TGAATTC  1097