BAC Information

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BAC

Clone NameB6Ng01-154H03
Chromosome1 (Build37)
Map Location 92,625,158 - 92,783,241
singlet/doubletdoublet
Overlap geneCol6a3
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8
Downstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H03.bB6Ng01-154H03.g
ACCDH949487DH949488
length1,167893
definitionDH949487|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H03, 5' end.DH949488|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,625,158 - 92,626,316)(92,782,677 - 92,783,241)
sequence
gaattcttgtttccccaactgttggcactgctggagaatgctggagaacc
ctaaggagatggagctttaatggaggaagtgggttgctgggcttgggctg
agtgtggatgcaggatgattagccagcacctgctcttgccagcttgcctt
gcctccatgatggactgtgtccctctggaaccatgagcccagatgactct
tcctccctgaagtcaccgttagcgacttttatcacagcaacagaaaagta
actgagacaggcccattggaatgatctgcttttacagtgtgttaaatttt
ccaccaggtttttcattcctcaaaaacatttattgtttagtagaacaaac
tactattgttccagttggaggttttctgtacacagttcttggggaggaaa
taggcacacagtcatttcactttcaaacatccattggtttggattttata
catctgctcattctttcttcttcttggaaaccatactgttctttctttta
aaaaaaagtgtgtgtctttatagggtattaaggagaactagagaaatatt
taattcctctctttactacaataaacacggtataaatggtaccagagtgt
gcctggcgttgggttacaggaaagggtcatgagccttggaggaaggaaaa
ctcacaatgtggctgagctcgaggaaggctgggaggctgcctgctggact
tggtcagtttaaagagaaaacacaaggattagagatgcgcatagcgcagt
agcagaacacttgcctcacagaccttaggtttgatccccagtatggcaac
aacaaaaacaaacaagaaactgcagagccagacttttaaccttctaatta
acttctcagtaaaaagcaaaagctctatttcccccatctacagaataaat
aaagctgtatttgggccatcgtggccaacagacttccaagccttgagagg
cttgcttagaagagtggacttctagaatgtcactcaatactgattaggga
taggagggtgtccacagaccaggtggagtcaccctgttccttcaacagct
ctctgattcagtccttcactcaacggttacagcctactggtcttggccac
tacctcagcgcctgacctcatgaattggatgatcacagcttccacacttt
ccacaccaaagctgagc
gaattcagtaagaatgttacctattcagtaacattcaaattcacttctag
tagagacagtgaaactaattaggcagtacaatgtacgtgaatagagctag
aaaagctcagggctagtctacatagtaattacttaggacaatatccaagt
catacccaaacacaggaatacacaatggaccaggaaataggtgggttgta
gtattattcatgaaagggttagtagaacagaattcctctggtgcaggttt
tcactagacccagaggaatagcataatcatgtatttactaaagggcccct
ggtggtgggtttaacaatagactagcattgcatcagagcattcacctggc
tcctgtgtttagctgatcttaattaagggttgttactattctcagttgta
aacacggcctggctcccaccatctttttatgtatacattttctttgtttt
gtgttaagaccagtgtaccttgacagatgtattcacctagctttcttgtt
tttcttctgtattataagactggtgcttgctttgagaaaatacattcaga
tacacactcctttgtgtctgtatatgtttgtcatttgtgccaactccttg
ctcgcttgtaaccagaaccctgtttcctgcagattaaggacccaattgag
gttcgtctgcaccactagcctttgagctccctgacattccagagtcaagg
tcaaagtttagctagtgatccctcaccctgtcttgtccttgtcccacagg
ggtacaagggacacattggggcagaatgtgaagggtggcttctttcccgg
ggctcagaaaatactgtgaagctgagaaggaaggctgccccaaggacact
gaggaagatggcctgtctccactcagctcttaaatactggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92625158_92626316
seq2: B6Ng01-154H03.b_46_1212

seq1  GAATTCTTGTTTCCCCAACTGTTGGCACTGCTGGAGAATGCTGGAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTCCCCAACTGTTGGCACTGCTGGAGAATGCTGGAGAACC  50

seq1  CTAAGGAGATGGAGCTTTAATGGAGGAAGTGGGTTGCTGGGCTTGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGATGGAGCTTTAATGGAGGAAGTGGGTTGCTGGGCTTGGGCTG  100

seq1  AGTGTGGATGCAGGATGATTAGCCAGCACCTGCTCTTGCCAGCTTGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGATGCAGGATGATTAGCCAGCACCTGCTCTTGCCAGCTTGCCTT  150

seq1  GCCTCCATGATGGACTGTGTCCCTCTGGAACCATGAGCCCAGATGACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATGATGGACTGTGTCCCTCTGGAACCATGAGCCCAGATGACTCT  200

seq1  TCCTCCCTGAAGTCACCGTTAGCGACTTTTATCACAGCAACAGAAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGAAGTCACCGTTAGCGACTTTTATCACAGCAACAGAAAAGTA  250

seq1  ACTGAGACAGGCCCATTGGAATGATCTGCTTTTACAGTGTGTTAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACAGGCCCATTGGAATGATCTGCTTTTACAGTGTGTTAAATTTT  300

seq1  CCACCAGGTTTTTCATTCCTCAAAAACATTTATTGTTTAGTAGAACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGTTTTTCATTCCTCAAAAACATTTATTGTTTAGTAGAACAAAC  350

seq1  TACTATTGTTCCAGTTGGAGGTTTTCTGTACACAGTTCTTGGGGAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGTTCCAGTTGGAGGTTTTCTGTACACAGTTCTTGGGGAGGAAA  400

seq1  TAGGCACACAGTCATTTCACTTTCAAACATCCATTGGTTTGGATTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACACAGTCATTTCACTTTCAAACATCCATTGGTTTGGATTTTATA  450

seq1  CATCTGCTCATTCTTTCTTCTTCTTGGAAACCATACTGTTCTTTCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCATTCTTTCTTCTTCTTGGAAACCATACTGTTCTTTCTTTTA  500

seq1  AAAAAAAGTGTGTGTCTTTATAGGGTATTAAGGAGAACTAGAGAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTGTGTGTCTTTATAGGGTATTAAGGAGAACTAGAGAAATATT  550

seq1  TAATTCCTCTCTTTACTACAATAAACACGGTATAAATGGTACCAGAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTCTCTTTACTACAATAAACACGGTATAAATGGTACCAGAGTGT  600

seq1  GCCTGGCGTTGGGTTACAGGAAAGGGTCATGAGCCTTGGAGGAAGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCGTTGGGTTACAGGAAAGGGTCATGAGCCTTGGAGGAAGGAAAA  650

seq1  CTCACAATGTGGCTGAGCTCGAGGAAGGCTGGGAGGCTGCCTGCTGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATGTGGCTGAGCTCGAGGAAGGCTGGGAGGCTGCCTGCTGGACT  700

seq1  TGGTCAGTTTAAAGAGAAAACACAAGGATTAGAGATGCGCATAGCGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTTTAAAGAGAAAACACAAGGATTAGAGATGCGCATAGCGCAGT  750

seq1  AGCAGAACACTTGCCTCACAGACCTTAGGTTTGATCCCCAGTATGGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACACTTGCCTCACAGACCTTAGGTTTGATCCCCAGTATGGCAAC  800

seq1  AACAAAAACAAACAAGAAACTGCAGAGCCAGACTTTTAAACCTTCTAATT  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAAAAACAAACAAGAAACTGCAGAGCCAGACTTTT-AACCTTCTAATT  849

seq1  AACTTCTCAGT-AAAAGCAAAAGCTCTATTTCCCCCATCTACAGAATAAA  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCAGTAAAAAGCAAAAGCTCTATTTCCCCCATCTACAGAATAAA  899

seq1  TAAAGCTGTATGT-GGCCATCGTGGCCAACAGAC-TCCAAGCC-TGAGAG  946
      ||||||||||| | |||||||||||||||||||| |||||||| ||||||
seq2  TAAAGCTGTATTTGGGCCATCGTGGCCAACAGACTTCCAAGCCTTGAGAG  949

seq1  GCTTGCTTAGAAGAGT-GAC-TCTAGAATGTCAC-CAATACTGAATAGGG  993
      |||||||||||||||| ||| ||||||||||||| ||||||||| |||||
seq2  GCTTGCTTAGAAGAGTGGACTTCTAGAATGTCACTCAATACTGATTAGGG  999

seq1  ATAGGA-GGTGTCCCAACAGACCAGGT-GAGTCACCCTGTTCCCTTCAAC  1041
      |||||| |||||||  ||||||||||| ||||||||||||| ||||||||
seq2  ATAGGAGGGTGTCC--ACAGACCAGGTGGAGTCACCCTGTT-CCTTCAAC  1046

seq1  AGCTCTCTGA-TCAGTCTCTCACTCCAGCGGGTACAG-CTACTGGTCTTG  1089
      |||||||||| ||||||  ||||| || ||| ||||| ||||||||||||
seq2  AGCTCTCTGATTCAGTCCTTCACT-CAACGGTTACAGCCTACTGGTCTTG  1095

seq1  GCCACTAACTCAGCG-CTGA-CTCATGAA-TGGATGAGCCACCAGCTTCC  1136
      ||||||| ||||||| |||| |||||||| ||||||| |   ||||||||
seq2  GCCACTACCTCAGCGCCTGACCTCATGAATTGGATGATC--ACAGCTTCC  1143

seq1  ACAGCTTCCACA-CAAAGCTGAGC  1159
      |||  ||||||| |||||||||||
seq2  ACACTTTCCACACCAAAGCTGAGC  1167

seq1: chr1_92782677_92783241
seq2: B6Ng01-154H03.g_394_958 (reverse)

seq1  CCCCCAGTATTAAGGAGCTGAGTGGAGACAGGCCATCTTCCTCAGTGTCC  50
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTATTTAAGAGCTGAGTGGAGACAGGCCATCTTCCTCAGTGTCC  50

seq1  TTGGGGCAGCCTTCCTTCTCAGCTTCACAGTATTTTCTGAGCCCCGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAGCCTTCCTTCTCAGCTTCACAGTATTTTCTGAGCCCCGGGAA  100

seq1  AGAAGCCACCCTTCACCTTCTGCCCCAATGTGTCCCTTGTACCCCTGTGG  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAGCCACCCTTCACATTCTGCCCCAATGTGTCCCTTGTACCCCTGTGG  150

seq1  GACAAGGACAAGACAGGGTGAGGGATCACTAGCTAAACTTTGACCTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGACAAGACAGGGTGAGGGATCACTAGCTAAACTTTGACCTTGAC  200

seq1  TCTGGAATGTCAGGGAGCTCAAAGGCTAGTGGTGCAGACGAACCTCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGTCAGGGAGCTCAAAGGCTAGTGGTGCAGACGAACCTCAATT  250

seq1  GGGTCCTTAATCTGCAGGAAACAGGGTTCTGGTTACAAGCGAGCAAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTAATCTGCAGGAAACAGGGTTCTGGTTACAAGCGAGCAAGGAG  300

seq1  TTGGCACAAATGACAAACATATACAGACACAAAGGAGTGTGTATCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACAAATGACAAACATATACAGACACAAAGGAGTGTGTATCTGAAT  350

seq1  GTATTTTCTCAAAGCAAGCACCAGTCTTATAATACAGAAGAAAAACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTCAAAGCAAGCACCAGTCTTATAATACAGAAGAAAAACAAGA  400

seq1  AAGCTAGGTGAATACATCTGTCAAGGTACACTGGTCTTAACACAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGGTGAATACATCTGTCAAGGTACACTGGTCTTAACACAAAACAA  450

seq1  AGAAAATGTATACATAAAAAGATGGTGGGAGCCAGGCCGTGTTTACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTATACATAAAAAGATGGTGGGAGCCAGGCCGTGTTTACAACT  500

seq1  GAGAATAGTAACAACCCTTAATTAAGATCAGCTAAACACAGGAGCCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGTAACAACCCTTAATTAAGATCAGCTAAACACAGGAGCCAGGT  550

seq1  GAATGCTCTGATGCA  565
      |||||||||||||||
seq2  GAATGCTCTGATGCA  565