BAC Information

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BAC

Clone NameB6Ng01-154O10
Chromosome1 (Build37)
Map Location 168,962,445 - 169,090,699
singlet/doubletdoublet
Overlap geneC030014K22Rik
Upstream geneLOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102
Downstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154O10.bB6Ng01-154O10.g
ACCDH949822DH949823
length1,184947
definitionDH949822|Mus musculus domesticus DNA, BAC clone: B6Ng01-154O10, 5' end.DH949823|Mus musculus domesticus DNA, BAC clone: B6Ng01-154O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,962,445 - 168,963,634)(169,089,751 - 169,090,699)
sequence
gaattcaggcatcgctaaaagattgaactcttattaagtccccgacgccc
tgcgtgcatccgaatccttccagcctttgctgttacatctccagtgtcct
gggttggttcccagctggtcctatagacaagcaaattactggcaggctct
ggttaagacactgtacttagcacacctagagaagtgagtgacaaggctcc
ttttaaaaggctgttggaaatgaggcttgccacactcctgcatcctctct
actccgtcttgagaatgcagcggcctcatgggacttcataggtcttgggg
aactagatctcttaatatgcccaaaaccaacctcggataataggctttct
gtatactggttccaaaatacttagatgttaacctttgttctctctctctc
tctctctctctctcacacacacacacacacacacacacacacacacacac
acacacacaaaccagaatgtgtctgtttggtgaggagaagctcatctcgg
ccttggcttcccttctccccttggcaaagtggtagtatagagtttcacac
cctgttcctgcagctgtgttgggtgaggcagggaatcagtaccagaccca
tgacggaaaatgttccatcaggaatccactctggcttggttcctccttca
tcccttttctcgcctggctgcaaaagaagacttaagaatgccacctgact
gccctgtctttccctcaataaagagaacatcctcacccaatatgcctctt
gctattgagcagagcagaccaacaaccgagacttaactcctccgtgggtg
aaagaaaactttatgaggagggaggcttgaaatccagcggcctttcctca
ggatggtagctcctggcattccatctgccctcttaagaatactagagtca
gtcagctctacccagcatagaccagagtggggttgttctgagagcattaa
ctctgaaacaaaagaattcattttcaggatcactgctggtatattttagc
tgtagtctctggatcgctgcccgacctagtgtgacctcggtgccacccta
gatcacttttgcggttttctctttgagaaaataaacagacccatcaggtg
tctaagcaaatcctactggattcggttctagtgccaaccagcgtgggggg
aggttacagggtaatggactggaacttcccaggg
gaattcccagaaaagcacgccagaaaacttatgatcatgacaacggctca
ttaataaggtattacttactgtgctacacacaattacaatagcatctatt
tttgtaagtttataactttacttctgtgtaggtccttatcacctcaccat
gctttatggctagtacaatattgtaagaggaaaaaaatgaaccctttata
tttcagcaccttcaggcttgctttgttgtatatttgtgtgcacatacaca
tgtatgtaggtccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
aacagagatcactgtcagcttgtccttaaaagctttcttagtctttgaga
cagggcctgtctctgaatctgtggcttgtggacttggctggactggctgg
ccagtagcccctcctgtctctgcctccttaatgctgggctcataggctga
cactcctactcccagtttatttacacaagggctgaggacaggcttacaca
ccaagcactttaacctccccctgctttttgaataagggcctggtatcttt
ttctttgcggtcacctcacaaaatacacagttaactgtccccagggctga
ttcttagctggacttagggatttgctatagacaaagggtagtatgtatat
ttttagcttgctttagtgaaggacttgagtggatgcttatataaagagaa
agttccaggcaagccagtagctttctcctctggaaagcaagcagcaggag
caagaagtcttaagccaagtattctgctgagcagtcagccctagccaagg
tcccagactcatctcaatgtgagagcagagtggaggagcagcaagctgcc
accctgagcaggtggagggctggctttcagagagtggaaagctaaggaat
ccagctgaggggcaaatatatggtgggggccagcgtgctgaatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168962445_168963634
seq2: B6Ng01-154O10.b_49_1232

seq1  GAATTCAGGCATCGCTAAAAGATTGAACTCTTATTAAGTCCCCGACGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCATCGCTAAAAGATTGAACTCTTATTAAGTCCCCGACGCCC  50

seq1  TGCGTGCATCCGAATCCTTCCAGCCTTTGCTGTTACATCTCCAGTGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCATCCGAATCCTTCCAGCCTTTGCTGTTACATCTCCAGTGTCCT  100

seq1  GGGTTGGTTCCCAGCTGGTCCTATAGACAAGCAAATTACTGGCAGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGTTCCCAGCTGGTCCTATAGACAAGCAAATTACTGGCAGGCTCT  150

seq1  GGTTAAGACACTGTACTTAGCACACCTAGAGAAGTGAGTGACAAGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGACACTGTACTTAGCACACCTAGAGAAGTGAGTGACAAGGCTCC  200

seq1  TTTTAAAAGGCTGTTGGAAATGAGGCTTGCCACACTCCTGCATCCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGGCTGTTGGAAATGAGGCTTGCCACACTCCTGCATCCTCTCT  250

seq1  ACTCCGTCTTGAGAATGCAGCGGCCTCATGGGACTTCATAGGTCTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGTCTTGAGAATGCAGCGGCCTCATGGGACTTCATAGGTCTTGGGG  300

seq1  AACTAGATCTCTTAATATGCCCAAAACCAACCTCGGATAATAGGCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATCTCTTAATATGCCCAAAACCAACCTCGGATAATAGGCTTTCT  350

seq1  GTATACTGGTTCCAAAATACTTAGATGTTAACCTTTGTTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTGGTTCCAAAATACTTAGATGTTAACCTTTGTTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACAC  450

seq1  ACACACACAAACCAGAATGTGTCTGTTTGGTGAGGAGAAGCTCATCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAACCAGAATGTGTCTGTTTGGTGAGGAGAAGCTCATCTCGG  500

seq1  CCTTGGCTTCCCTTCTCCCCTTGGCAAAGTGGTAGTATAGAGTTTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTTCCCTTCTCCCCTTGGCAAAGTGGTAGTATAGAGTTTCACAC  550

seq1  CCTGTTCCTGCAGCTGTGTTGGGTGAGGCAGGGAATCAGTACCAGACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCTGCAGCTGTGTTGGGTGAGGCAGGGAATCAGTACCAGACCCA  600

seq1  TGACGGAAAATGTTCCATCAGGAATCCACTCTGGCTTGGTTCCTCCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGAAAATGTTCCATCAGGAATCCACTCTGGCTTGGTTCCTCCTTCA  650

seq1  TCCCTTTTCTCGCCTGGCTGCAAAAGAAGACTTAAGAATGCCACCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTCTCGCCTGGCTGCAAAAGAAGACTTAAGAATGCCACCTGACT  700

seq1  GCCCTGTCTTTCCCTCAATAAAGAGAACATCCTCACCCAATATGCCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCTTTCCCTCAATAAAGAGAACATCCTCACCCAATATGCCTCTT  750

seq1  GCTATTGAGCAGAGCAGACCAACAACCGAGACTTAACTCCTCCGTGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGAGCAGAGCAGACCAACAACCGAGACTTAACTCCTCCGTGGGTG  800

seq1  AAAGAAAACTTTATGAGGAGGGAGGCTTGAAATCCAGCGGCCTTTCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACTTTATGAGGAGGGAGGCTTGAAATCCAGCGGCCTTTCCTCA  850

seq1  GGATGGTAGCTCCTGGCATTCCATCTGCCCTCTTAAG-ATACTAGAGTCA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGATGGTAGCTCCTGGCATTCCATCTGCCCTCTTAAGAATACTAGAGTCA  900

seq1  GTCAGCTCTACCCAGCATAGACCAGAGTGGGGTTGTTCTGAGAGCATTAA  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCAGCTCTACCCAGCATAGACCAGAGTGGGGTTGTTCTGAGAGCATT-A  949

seq1  ACTCTGAAAACAAAAGAATTCATTTTCAGGAATCACTGCTGGTATATTTT  999
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTCTG-AAACAAAAGAATTCATTTTCAGG-ATCACTGCTGGTATATTTT  997

seq1  AGCTGTAGTCTCTGGATCGCTGCCCGACCTAGTGTGACCTCGGTGCCACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAGTCTCTGGATCGCTGCCCGACCTAGTGTGACCTCGGTGCCACC  1047

seq1  CTAGTATCACTTTTGC-GTTTTCTCTTTGAGAGATAAACCAGACCCATAC  1098
      |||| ||||||||||| ||||||||||||||| |  || ||||||||| |
seq2  CTAG-ATCACTTTTGCGGTTTTCTCTTTGAGAAAATAAACAGACCCAT-C  1095

seq1  AGGTGTCTAAAGCAAATTCCTACTGAAGTCGGTTCTAAGTGCAAACCAGC  1148
      |||||||| ||||||| |||||||| | |||||||| ||||| |||||||
seq2  AGGTGTCT-AAGCAAA-TCCTACTGGATTCGGTTCT-AGTGCCAACCAGC  1142

seq1  -TGGGGGAGAGTTACAGTGTAAATGGACTGAACTTTTCCAGGG  1190
       ||||||   ||||||| || ||||||||| |  || ||||||
seq2  GTGGGGGGAGGTTACAGGGT-AATGGACTGGAACTTCCCAGGG  1184

seq1: chr1_169089751_169090699
seq2: B6Ng01-154O10.g_69_1015 (reverse)

seq1  GCTCAGTCAGCACAGCTTGGCCCCCACCCTATATCTGCCCCTCAGCCTGG  50
      ||||| ||||||| || ||||||||||| ||||| |||||||||| ||||
seq2  GCTCATTCAGCAC-GC-TGGCCCCCACCATATATTTGCCCCTCAG-CTGG  47

seq1  ATTCCTTAGCTTTCCACTCTCTGAAAGCCAG-CCTCCACCTGCTCAGGGT  99
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTCCTTAGCTTTCCACTCTCTGAAAGCCAGCCCTCCACCTGCTCAGGGT  97

seq1  GGCAGCTTGCTGCTCCTCCACTCTGCTCTCACATTGAGATGATGTCT-GG  148
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  GGCAGCTTGCTGCTCCTCCACTCTGCTCTCACATTGAGATGA-GTCTGGG  146

seq1  ACCTTGGCTAGGGCTGACTGCTCAGCAGAATAACTTGGCTTAAGACTTCC  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  ACCTTGGCTAGGGCTGACTGCTCAGCAGAAT-ACTTGGCTTAAGACTTCT  195

seq1  TGCTCCTGCTGCTTGCCTTCCAGAGGAGAAAGCTACTGGCTTGCCTGGAG  248
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TGCTCCTGCTGCTTGCTTTCCAGAGGAGAAAGCTACTGGCTTGCCTGGAA  245

seq1  CTTTCTCTTT-TATAAGCATCCACTCAAGTCCTTCACTAAAGCAAGCTAA  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTATATAAGCATCCACTCAAGTCCTTCACTAAAGCAAGCTAA  295

seq1  AAATATACATACTACCCTTTGTCTATAGCAAATCCCTAAGTCCAGCTAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACATACTACCCTTTGTCTATAGCAAATCCCTAAGTCCAGCTAAG  345

seq1  AATCAGCCCTGGGGACAGTTAACTGTGTATTTTGTGAGGTGACCGCAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCCTGGGGACAGTTAACTGTGTATTTTGTGAGGTGACCGCAAAG  395

seq1  AAAAAGATACCAGGCCCTTATTCAAAAAGCAGGGGGAGGTTAAAGTGCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATACCAGGCCCTTATTCAAAAAGCAGGGGGAGGTTAAAGTGCTT  445

seq1  GGTGTGTAAGCCTGTCCTCAGCCCTTGTGTAAATAAACTGGGAGTAGGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTAAGCCTGTCCTCAGCCCTTGTGTAAATAAACTGGGAGTAGGAG  495

seq1  TGTCAGCCTATGAGCCCAGCATTAAGGAGGCAGAGACAGGAGGGGCTACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCTATGAGCCCAGCATTAAGGAGGCAGAGACAGGAGGGGCTACT  545

seq1  GGCCAGCCAGTCCAGCCAAGTCCACAAGCCACAGATTCAGAGACAGGCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCAGTCCAGCCAAGTCCACAAGCCACAGATTCAGAGACAGGCCC  595

seq1  TGTCTCAAAGAGTAAGAAAGCTTTTAAGGACAAGCTGACAGTGATCTCTG  647
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAGACTAAGAAAGCTTTTAAGGACAAGCTGACAGTGATCTCTG  645

seq1  TTCTCACACACACACACACACACACACACACACACACACGGACCTACATA  697
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACACACACACACACACACACACACACACACACACGGACCTACATA  695

seq1  CATGTGTATGTGCACACAAATATACAACAAAGCAAGCCTGAAGGTGCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATGTGCACACAAATATACAACAAAGCAAGCCTGAAGGTGCTGA  745

seq1  AATATAAAGGGTTCATTTTTTTCCTCTTACAATATTGTACTAGCCATAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGGGTTCATTTTTTTCCTCTTACAATATTGTACTAGCCATAAA  795

seq1  GCATGGTGAGGTGATAAGGACCTACACAGAAGTAAAGTTATAAACTTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGAGGTGATAAGGACCTACACAGAAGTAAAGTTATAAACTTACA  845

seq1  AAAATAGATGCTATTGTAATTGTGTGTAGCACAGTAAGTAATACCTTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATGCTATTGTAATTGTGTGTAGCACAGTAAGTAATACCTTATT  895

seq1  AATGAGCCGTTGTCATGATCATAAGTTTTCTGGCGTGCTTTTCTGGGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCGTTGTCATGATCATAAGTTTTCTGGCGTGCTTTTCTGGGAAT  945

seq1  TC  949
      ||
seq2  TC  947