BAC Information

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BAC

Clone NameB6Ng01-155A09
Chromosome1 (Build37)
Map Location 21,763,061 - 21,798,032
singlet/doubletdoublet
Overlap geneKcnq5
Upstream geneIl17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155A09.bB6Ng01-155A09.g
ACCDH949912DH949913
length1,0601,062
definitionDH949912|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A09, 5' end.DH949913|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,796,946 - 21,798,032)(21,763,061 - 21,764,125)
sequence
gaattcattgaacatatttatgtattaagtatgatgaagtaggtatttct
atttttctataataatggatcactttaatttagcttcatatataattgca
tatcatagaatatttcccaattgttaaaaattatcagtactcatttctta
tattaatgactcactgtttaatatttcttttaatagctatatcctaattt
tccttttagacagtagaagagaatggtgtacagagagatagataaacttg
tattacctcacatggctgatgagagtcactcagaaaataatccaaaaatg
atataattttctgccctaaaatcacattctcgtatttattaaaatctatt
cctttttgtgatttttcctgaataagtacatgcctcaatttattttgttt
cgtgatttagttagcactgttcatttatatagaaacctggagctggatta
ggatgatcacaggctgaacctggtagtggaccatcatgcagagcatctca
gtaagatgctaaaggactgttttgaaacacagtcagtgcgtggtaggcac
agggaggggccactttgttttgttaagctatttggaagctgagtggtaat
atcccttggataggagtgatgatctgaatgaacttacatttcacaaagga
ccattttataatggtttggatgagacccaaggcaagaaaatagaatagta
ctgagatgagagaatcctgcagtggccagatagaattagcactagaccca
acttgtcaagatagatgtttgccataacttgcatatgagtcccaacttca
ttaaaatgttgatttaagcaataacacaatttttaaaaatgctgttggta
ctttaaaagctgtgctcagaagttgttctatgttatgtctccaaatgtag
tcttctgaagtctgtggaatggcagggactacaatataagcttccacaaa
aagaaagtttctctgagtaataaaaatacagagattggattggggctcag
agtgagtatgattctaggaatgagtactaaattcaaaccaggggaaggga
ggggagggag
gaattctgtaagagaacaataaaaatggtaattattaataaaagtaattt
ggagacattaaaacagaattaacacacattcattaaataatttttatgtt
tggttactaaattctgtggtattacatcagtgtactggataaaatacatt
aaaatgattgcttttctgcttatcagacttcactgtgtgaaatgcatgct
catgtgttgccctcacttatgtttggcttatgcagttaataaagcactgt
tttcattcaagcattccttatttctaggttgcagggctgatatatagtcc
agaatataaagtgtaaccttaagtgtagcattgaagccagactagagaag
tgttatctatctgctagatgagaaatgatctggctcaaggattccaggaa
atctagcacctgcttacaacatgtaaggcttccttaactggctcctgagg
atcttgaaaaagtgtttctgtccaaatacgaatgagaaagagagagagag
agagagagagagagagagagagagagagagagagatattctaagaactaa
gaagggaaaatgtcactgagtagaattttttagaaatgtgacaattctat
atgtgacaattctgtatgtaacaattatggtagtttcttacaggtataca
ttgaattaactatgggaaatttaggttttgctcattttaatcccatagta
attatacaattgtcagcaacagcaatcagatacataaccagaatggcaca
ttaagaaaactggacaaacagccagtataatttttaaaactataacactc
cactggccatagtactggctttatttgagtttaaagtcatattactctca
gcatctgagtttgaggcaatttgtttccagaataattggaaactaaacta
tagggcttgtatattgatatgttgtctcaggcttcctctagtactgtatg
cttagtaataacagaaaatcagcaagtctgttcaggaaacaaaacaaagt
gaactaccataatagagcatgattcagagagcatcctgggaaatatctct
cccaattgccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_21796946_21798032
seq2: B6Ng01-155A09.b_47_1106 (reverse)

seq1  CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCCTTGGTTTTGA  50
                      |||||||   |||||||||||||  ||| |||||
seq2  ----------------CTCCCTC---CCCTCCCTTCCCC--TGG-TTTGA  28

seq1  ATTTAGTACTTCATTCCTAGAATCATACTCACTCTGAGCCCCAATTCCAA  100
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  ATTTAGTAC-TCATTCCTAGAATCATACTCACTCTGAGCCCCAA-TCCAA  76

seq1  TCTCTGTATTTTTTATTTACTCAGAGAAACTTTCTTTTTTGTGGAAGCTT  150
      |||||||||||||   |||||||||||||||||| |||||||||||||||
seq2  TCTCTGTATTTTT--ATTACTCAGAGAAACTTTC-TTTTTGTGGAAGCTT  123

seq1  ATATTGTAGTCCCTGCCATTCCACAGACTTCAGAAGACTACATTTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAGTCCCTGCCATTCCACAGACTTCAGAAGACTACATTTGGAGA  173

seq1  CATAACATAGAACAACTTCTGAGCACAGCTTTTAAAGTACCAACAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATAGAACAACTTCTGAGCACAGCTTTTAAAGTACCAACAGCATT  223

seq1  TTTAAAAATTGTGTTATTGCTTAAATCAACATTTTAATGAAGTTGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTGTGTTATTGCTTAAATCAACATTTTAATGAAGTTGGGACT  273

seq1  CATATGCAAGTTATGGCAAACATCTATCTTGACAAGTTGGGTCTAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAAGTTATGGCAAACATCTATCTTGACAAGTTGGGTCTAGTGCT  323

seq1  AATTCTATCTGGCCACTGCAGGATTCTCTCATCTCAGTACTATTCTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATCTGGCCACTGCAGGATTCTCTCATCTCAGTACTATTCTATTT  373

seq1  TCTTGCCTTGGGTCTCATCCAAACCATTATAAAATGGTCCTTTGTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTTGGGTCTCATCCAAACCATTATAAAATGGTCCTTTGTGAAAT  423

seq1  GTAAGTTCATTCAGATCATCACTCCTATCCAAGGGATATTACCACTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTCATTCAGATCATCACTCCTATCCAAGGGATATTACCACTCAGC  473

seq1  TTCCAAATAGCTTAACAAAACAAAGTGGCCCCTCCCTGTGCCTACCACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATAGCTTAACAAAACAAAGTGGCCCCTCCCTGTGCCTACCACGC  523

seq1  ACTGACTGTGTTTCAAAACAGTCCTTTAGCATCTTACTGAGATGCTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGTGTTTCAAAACAGTCCTTTAGCATCTTACTGAGATGCTCTGC  573

seq1  ATGATGGTCCACTACCAGGTTCAGCCTGTGATCATCCTAATCCAGCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTCCACTACCAGGTTCAGCCTGTGATCATCCTAATCCAGCTCCA  623

seq1  GGTTTCTATATAAATGAACAGTGCTAACTAAATCACGAAACAAAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTATATAAATGAACAGTGCTAACTAAATCACGAAACAAAATAAAT  673

seq1  TGAGGCATGTACTTATTCAGGAAAAATCACAAAAAGGAATAGATTTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATGTACTTATTCAGGAAAAATCACAAAAAGGAATAGATTTTAAT  723

seq1  AAATACGAGAATGTGATTTTAGGGCAGAAAATTATATCATTTTTGGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGAGAATGTGATTTTAGGGCAGAAAATTATATCATTTTTGGATTA  773

seq1  TTTTCTGAGTGACTCTCATCAGCCATGTGAGGTAATACAAGTTTATCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGTGACTCTCATCAGCCATGTGAGGTAATACAAGTTTATCTAT  823

seq1  CTCTCTGTACACCATTCTCTTCTACTGTCTAAAAGGAAAATTAGGATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTACACCATTCTCTTCTACTGTCTAAAAGGAAAATTAGGATATA  873

seq1  GCTATTAAAAGAAATATTAAACAGTGAGTCATTAATATAAGAAATGAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAAAGAAATATTAAACAGTGAGTCATTAATATAAGAAATGAGTA  923

seq1  CTGATAATTTTTAACAATTGGGAAATATTCTATGATATGCAATTATATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATTTTTAACAATTGGGAAATATTCTATGATATGCAATTATATAT  973

seq1  GAAGCTAAATTAAAGTGATCCATTATTATAGAAAAATAGAAATACCTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAATTAAAGTGATCCATTATTATAGAAAAATAGAAATACCTACT  1023

seq1  TCATCATACTTAATACATAAATATGTTCAATGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  TCATCATACTTAATACATAAATATGTTCAATGAATTC  1060

seq1: chr1_21763061_21764125
seq2: B6Ng01-155A09.g_66_1127

seq1  GAATTCTGTAAGAGAACAATAAAAATGGTAATTATTAATAAAAGTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGAGAACAATAAAAATGGTAATTATTAATAAAAGTAATTT  50

seq1  GGAGACATTAAAACAGAATTAACACACATTCATTAAATAATTTTTATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATTAAAACAGAATTAACACACATTCATTAAATAATTTTTATGTT  100

seq1  TGGTTACTAAATTCTGTGGTATTACATCAGTGTACTGGATAAAATACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTAAATTCTGTGGTATTACATCAGTGTACTGGATAAAATACATT  150

seq1  AAAATGATTGCTTTTCTGCTTATCAGACTTCACTGTGTGAAATGCATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTGCTTTTCTGCTTATCAGACTTCACTGTGTGAAATGCATGCT  200

seq1  CATGTGTTGCCCTCACTTATGTTTGGCTTATGCAGTTAATAAAGCACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTGCCCTCACTTATGTTTGGCTTATGCAGTTAATAAAGCACTGT  250

seq1  TTTCATTCAAGCATTCCTTATTTCTAGGTTGCAGGGCTGATATATAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCAAGCATTCCTTATTTCTAGGTTGCAGGGCTGATATATAGTCC  300

seq1  AGAATATAAAGTGTAACCTTAAGTGTAGCATTGAAGCCAGACTAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAAGTGTAACCTTAAGTGTAGCATTGAAGCCAGACTAGAGAAG  350

seq1  TGTTATCTATCTGCTAGATGAGAAATGATCTGGCTCAAGGATTCCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTATCTGCTAGATGAGAAATGATCTGGCTCAAGGATTCCAGGAA  400

seq1  ATCTAGCACCTGCTTACAACATGTAAGGCTTCCTTAACTGGCTCCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCACCTGCTTACAACATGTAAGGCTTCCTTAACTGGCTCCTGAGG  450

seq1  ATCTTGAAAAAGTGTTTCTGTCCAAATACGAATGAGAAAGAGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAAAAAGTGTTTCTGTCCAAATACGAATGAGAAAGAGAGAGAGAG  500

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATTCTAAGAACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATTCTAAGAACTAA  550

seq1  GAAGGGAAAATGTCACTGAGTAGAATTTTTTAGAAATGTGACAATTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAAATGTCACTGAGTAGAATTTTTTAGAAATGTGACAATTCTAT  600

seq1  ATGTGACAATTCTGTATGTAACAATTATGGTAGTTTCTTACAGGTATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAATTCTGTATGTAACAATTATGGTAGTTTCTTACAGGTATACA  650

seq1  TTGAATTAACTATGGGAAATTTAGGTTTTGCTCATTTTAATCCCATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAACTATGGGAAATTTAGGTTTTGCTCATTTTAATCCCATAGTA  700

seq1  ATTATACAATTGTCAGCAACAGCAATCAGATACATAACCAGAATGGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAATTGTCAGCAACAGCAATCAGATACATAACCAGAATGGCACA  750

seq1  TTAAGAAAACTGGACAAACAGCCAGTATAATTTTTAAAACTATAACACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAACTGGACAAACAGCCAGTATAATTTTTAAAACTATAACACTC  800

seq1  CACTGGCCATAGTACTGGCTTTATTTGAGTTTAAAGTCATATTACTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCATAGTACTGGCTTTATTTGAGTTTAAAGTCATATTACTCTCA  850

seq1  GCATCTGAGTTTGAGGCAATTTGTTTCCAGAATAATTGGAAACTAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAGTTTGAGGCAATTTGTTTCCAGAATAATTGGAAACTAAACTA  900

seq1  TAGGGCTTGTATATTGATATGTTGTCTCAGGCTT-CTCTAGTACTGTATG  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGGGCTTGTATATTGATATGTTGTCTCAGGCTTCCTCTAGTACTGTATG  950

seq1  CTTAGTAATAACAGAAAAATCAGCAAGTCTGTTCAAGGAAACAAAACAAA  999
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CTTAGTAATAACAG-AAAATCAGCAAGTCTGTTC-AGGAAACAAAACAAA  998

seq1  GTGAACTACCATAATAAGAAGGCATGATTCAGAGAAGCATCCT-GGAAAT  1048
      ||||||||||||||| |||  ||||||||||||| |||||||| ||||||
seq2  GTGAACTACCATAAT-AGA--GCATGATTCAGAG-AGCATCCTGGGAAAT  1044

seq1  ATCTCTCCC-ATTGCCAA  1065
      ||||||||| ||||||||
seq2  ATCTCTCCCAATTGCCAA  1062