BAC Information

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BAC

Clone NameB6Ng01-155H16
Chromosome1 (Build37)
Map Location 160,947,190 - 161,085,153
singlet/doubletdoublet
Overlap gene4930562F17Rik
Upstream gene6430517E21Rik, Astn1, Pappa2
Downstream geneEG240853, LOC664972, Rfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155H16.bB6Ng01-155H16.g
ACCDH950250DH950251
length1,0461,144
definitionDH950250|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H16, 5' end.DH950251|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,947,190 - 160,948,259)(161,083,987 - 161,085,153)
sequence
gaattcactttcattgtctcaaaaatcagaaacaagcagggaaaaaataa
agcctaaatggattttattacatctctaatcctgtctcacctagcacact
gagtattaataatggaacaaaaagagtttacagaagcaagataaaaataa
atcaactggcaccggatttatgtgataggtacgtactttgtcctggtgat
gagtcacttgcttaggatctgctcaggttcagcaggaagtgaatggacca
tcttcagcttaatagtccccctcccatctctactgttgctccattatgag
gttcaggctctttaattttgaaaaatgcagctggttagttttcccggatg
agataatttaggaactgcatggttgacccatccaaacagaatactcttaa
ttttccaaattcccactcatctttgagcacagttcaagtgtcctttcttc
tgggaatccatccctgtcaccatagacagaagtgatgactccttactttg
gatcctatgttataaatgttcccaagtctatccctcccagcggtgatgat
gatatatgctagctgccattgaagaaatggaaatgatcggagaactttaa
cccctacttaaaaaaaaaaaagtctgtggtagtaggttatacaaaactat
tttcatacaggcatataaatgagcccttgttttacatgtgaactgaggta
aagctaaggaaaaagttgtgtaattagtaactagatcgggtggtagaaga
agctgaactgggagctcagatcctccagcttgtatcacacagtgattccc
tgtctcaacactgaaaactgtactctctattttgctgtatgtctcattgc
caaaaggagaatgagggaggtagagaagaggtgggtaaggaagaaggaag
aactagataaagctttaaagttgagataggaaattgttcaaaattaggaa
ctgtagccagtaattatcacagctatagatgtagtgagaaagcagtgaaa
agaagctgcttggtcaggcttctccctgtgggggttgaaggagggg
gaattcaagagtgaagtcacctgaccctgtatgggagacatttagatcga
tctgtatatatcttctatttctcatgaccgagtcttgttatattaaggaa
tttatctatttcatctgtgttatttggtttgttgttaaaattatttaaaa
tatcccctttaaaaatcccctgttttctatggtgccaactgtattgtctc
tctgatctctctgatttacggtgattaatgtgaattctttttcagacaat
ttaaagacatctaggtttttttttgatatggttaatagaaatttgttggc
tcctttgattgtgttttctcttgctttttcaggtacccataaaacgaatg
tgttgcctgttatgtagttttatagactgactttgagagggaaaaaaaca
tccttatttagcagtgattaatatgaggaaatgagagactaatccttatc
agacaaaaacctgataaaaataaatgagtttggttgaaaaataccagaac
aagaagacagtgtacaactggcacaaggtcttacaactcaagaagaaaag
gcaaaacttctgtggaaggacacttctaaccaggacataaaagatttcca
tggattgagctgagaataagtaaaaacccacactccaaaattgtaaagca
ctagagaaacaatgtacagtaacaacatatcaattaataggactatcatg
tataagcatacacacacacacacacacacacacacacacacacacatata
tatatatatatatatatatatatatttaaattacatgaaagaaggaatac
aatcatgatacataggagtccgaaaatcatagactatttaaaaataatta
actagaagccaaatgaaattttcagtaccaggattgggttacatataatt
aacttgctggctaaaaagttcatgggaacacctccccccccacccccaaa
caacccaggctattgccaacactactgtttgctcctccacaaatttcagt
aagtcctaatgctgagacacaccctcataacttcagtgtaccagagagtg
agctggtgcctatctagagctcagagatggacccaacctgacctgggtgc
caacacctgaacgagaataagcagaaccaaggtaaacaaatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160947190_160948259
seq2: B6Ng01-155H16.b_45_1090

seq1  GAATTCACTTTCATTGTCTCAAAAATCAGAAACAAGCAGGGAAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCATTGTCTCAAAAATCAGAAACAAGCAGGGAAAAAATAA  50

seq1  AGCCTAAATGGATTTTATTACATCTCTAATCCTGTCTCACCTAGCACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAATGGATTTTATTACATCTCTAATCCTGTCTCACCTAGCACACT  100

seq1  GAGTATTAATAATGGAACAAAAAGAGTTTACAGAAGCAAGATAAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTAATAATGGAACAAAAAGAGTTTACAGAAGCAAGATAAAAATAA  150

seq1  ATCAACTGGCACCGGATTTATGTGATAGGTACGTACTTTGTCCTGGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGGCACCGGATTTATGTGATAGGTACGTACTTTGTCCTGGTGAT  200

seq1  GAGTCACTTGCTTAGGATCTGCTCAGGTTCAGCAGGAAGTGAATGGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTTGCTTAGGATCTGCTCAGGTTCAGCAGGAAGTGAATGGACCA  250

seq1  TCTTCAGCTTAATAGTCCCCCTCCCATCTCTACTGTTGCTCCATTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCTTAATAGTCCCCCTCCCATCTCTACTGTTGCTCCATTATGAG  300

seq1  GTTCAGGCTCTTTAATTTTGAAAAATGCAGCTGGTTAGTTTTCCCGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGCTCTTTAATTTTGAAAAATGCAGCTGGTTAGTTTTCCCGGATG  350

seq1  AGATAATTTAGGAACTGCATGGTTGACCCATCCAAACAGAATACTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTAGGAACTGCATGGTTGACCCATCCAAACAGAATACTCTTAA  400

seq1  TTTTCCAAATTCCCACTCATCTTTGAGCACAGTTCAAGTGTCCTTTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAATTCCCACTCATCTTTGAGCACAGTTCAAGTGTCCTTTCTTC  450

seq1  TGGGAATCCATCCCTGTCACCATAGACAGAAGTGATGACTCCTTACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCCATCCCTGTCACCATAGACAGAAGTGATGACTCCTTACTTTG  500

seq1  GATCCTATGTTATAAATGTTCCCAAGTCTATCCCTCCCAGCGGTGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATGTTATAAATGTTCCCAAGTCTATCCCTCCCAGCGGTGATGAT  550

seq1  GATATATGCTAGCTGCCATTGAAGAAATGGAAATGATCGGAGAACTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGCTAGCTGCCATTGAAGAAATGGAAATGATCGGAGAACTTTAA  600

seq1  CCCCTACTTAAAAAAAAAAAAGTCTGTGGTAGTAGGTTATACAAAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACTTAAAAAAAAAAAAGTCTGTGGTAGTAGGTTATACAAAACTAT  650

seq1  TTTCATACAGGCATATAAATGAGCCCTTGTTTTACATGTGAACTGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACAGGCATATAAATGAGCCCTTGTTTTACATGTGAACTGAGGTA  700

seq1  AAGCTAAGGAAAAAGTTGTGTAATTAGTAACTAGATCGGGTGGTAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGGAAAAAGTTGTGTAATTAGTAACTAGATCGGGTGGTAGAAGA  750

seq1  AGCTGAACTGGGAGCTCAGATCCTCCAGCTTGTATCACACAGTGATTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTGGGAGCTCAGATCCTCCAGCTTGTATCACACAGTGATTCCC  800

seq1  TGTCTCAACACTGAAAACTGTACTCTCTATTTTGCTGTATGTCTCATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAACACTGAAAACTGTACTCTCTATTTTGCTGTATGTCTCATTGC  850

seq1  CAAAAGGAGAAGGAGGGAGGTAGAGAAGAGGTGGGTAAGGAAGAAGGAAG  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGAATGAGGGAGGTAGAGAAGAGGTGGGTAAGGAAGAAGGAAG  900

seq1  AACTAGATAAAAGCTTTAAAGTTGAAGAATAGGAAATTGTTCAAAAATTA  950
      |||||||| ||||||||||||||||   |||||||||||||| |||||||
seq2  AACTAGAT-AAAGCTTTAAAGTTGA--GATAGGAAATTGTTC-AAAATTA  946

seq1  GGAAACTGTAGCCAGTAAATTTATTCAACAGGCTATAGAATGTAAGTGAG  1000
      || |||||||||||||||  ||||   ||| ||||||| |||| ||||||
seq2  GG-AACTGTAGCCAGTAA--TTAT--CACA-GCTATAG-ATGT-AGTGAG  988

seq1  AAAAGCAAGTGAAAAAAGAAAGCCTGCTTTTGGTCAGGGCTTCTACCACA  1050
       ||||| ||||  |||||||   ||||  ||||||| ||||||| ||   
seq2  -AAAGC-AGTG--AAAAGAA--GCTGC--TTGGTCA-GGCTTCTCCC---  1026

seq1  GTTGGGGGTTGAAGGAGGGG  1070
        ||||||||||||||||||
seq2  TGTGGGGGTTGAAGGAGGGG  1046

seq1: chr1_161083987_161085153
seq2: B6Ng01-155H16.g_65_1208 (reverse)

seq1  AGCATTTGGTTTTTCCCCTTGGTTCCTGGCTTA-TCTCGGTTCAGGTTGT  49
      ||||||||    ||  |||||||||   ||||| |||| ||||||| |||
seq2  AGCATTTG----TTTACCTTGGTTC--TGCTTATTCTC-GTTCAGG-TGT  42

seq1  TGGCCACCCAGTGTCAGGTGTGGGTTCCATCTCATAGAAGCTCTTAGATA  99
      ||| ||||||| ||||||| |||| ||||||||     ||||| ||||||
seq2  TGG-CACCCAG-GTCAGGT-TGGG-TCCATCTC---TGAGCTC-TAGATA  84

seq1  GGCACCAGCTCCACTTCTCTGTGTTCACTG-AGTTATGAGGGTGTTGTCT  148
      |||||||||| ||| |||||| || ||||| ||||||||||||| |||| 
seq2  GGCACCAGCT-CAC-TCTCTG-GTACACTGAAGTTATGAGGGTG-TGTC-  129

seq1  TCAGCAATAGGACCTTACTGAAATTTTGTGGA-GAGCAAACAGTAGTGTT  197
      |||||| ||||| |||||||||| |||||||| |||||||||||||||||
seq2  TCAGCATTAGGA-CTTACTGAAA-TTTGTGGAGGAGCAAACAGTAGTGTT  177

seq1  GGCAATAGCCTGGGTTGTTTGGGGGTGGGGGGGGAGGTGTTCCCATGGAA  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCAATAGCCTGGGTTGTTTGGGGGTGGGGGGGGAGGTGTTCCCAT-GAA  226

seq1  CTTTTTTAGCCAGCAAGTTAATTATATGTAACCCAATCCTGGTACTGAAA  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTTTTAGCCAGCAAGTTAATTATATGTAACCCAATCCTGGTACTGAAA  275

seq1  ATTTCATTTGGCTTCTAGTTAATTATTTTTAAATAGTCTATTGATTTTCG  347
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTCATTTGGCTTCTAGTTAATTATTTTTAAATAGTCTA-TGATTTTCG  324

seq1  GACTCCTATGTATCATGATTGTATTCCTTCTTTCATGTAATTTAAATATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTATGTATCATGATTGTATTCCTTCTTTCATGTAATTTAAATATA  374

seq1  TATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTG  424

seq1  TGTGTGTGTGTATGCTTATACATGATAGTCCTATTAATTGATATGTTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATGCTTATACATGATAGTCCTATTAATTGATATGTTGTT  474

seq1  ACTGTACATTGTTTCTCTAGTGCTTTACAATTTTGGAGTGTGGGTTTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACATTGTTTCTCTAGTGCTTTACAATTTTGGAGTGTGGGTTTTTA  524

seq1  CTTATTCTCAGCTCAATCCATGGAAATCTTTTATGTCCTGGTTAGAAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTCAGCTCAATCCATGGAAATCTTTTATGTCCTGGTTAGAAGTG  574

seq1  TCCTTCCACAGAAGTTTTGCCTTTTCTTCTTGAGTTGTAAGACCTTGTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCACAGAAGTTTTGCCTTTTCTTCTTGAGTTGTAAGACCTTGTGC  624

seq1  CAGTTGTACACTGTCTTCTTGTTCTGGTATTTTTCAACCAAACTCATTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTACACTGTCTTCTTGTTCTGGTATTTTTCAACCAAACTCATTTA  674

seq1  TTTTTATCAGGTTTTTGTCTGATAAGGATTAGTCTCTCATTTCCTCATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCAGGTTTTTGTCTGATAAGGATTAGTCTCTCATTTCCTCATAT  724

seq1  TAATCACTGCTAAATAAGGATGTTTTTTTCCCTCTCAAAGTCAGTCTATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTGCTAAATAAGGATGTTTTTTTCCCTCTCAAAGTCAGTCTATA  774

seq1  AAACTACATAACAGGCAACACATTCGTTTTATGGGTACCTGAAAAAGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACATAACAGGCAACACATTCGTTTTATGGGTACCTGAAAAAGCAA  824

seq1  GAGAAAACACAATCAAAGGAGCCAACAAATTTCTATTAACCATATCAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACACAATCAAAGGAGCCAACAAATTTCTATTAACCATATCAAAA  874

seq1  AAAAACCTAGATGTCTTTAAATTGTCTGAAAAAGAATTCACATTAATCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTAGATGTCTTTAAATTGTCTGAAAAAGAATTCACATTAATCAC  924

seq1  CGTAAATCAGAGAGATCAGAGAGACAATACAGTTGGCACCATAGAAAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATCAGAGAGATCAGAGAGACAATACAGTTGGCACCATAGAAAACA  974

seq1  GGGGATTTTTAAAGGGGATATTTTAAATAATTTTAACAACAAACCAAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTTTAAAGGGGATATTTTAAATAATTTTAACAACAAACCAAATA  1024

seq1  ACACAGATGAAATAGATAAATTCCTTAATATAACAAGACTCGGTCATGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGAAATAGATAAATTCCTTAATATAACAAGACTCGGTCATGAG  1074

seq1  AAATAGAAGATATATACAGATCGATCTAAATGTCTCCCATACAGGGTCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGATATATACAGATCGATCTAAATGTCTCCCATACAGGGTCAG  1124

seq1  GTGACTTCACTCTTGAATTC  1167
      ||||||||||||||||||||
seq2  GTGACTTCACTCTTGAATTC  1144