BAC Information

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BAC

Clone NameB6Ng01-156D11
Chromosome1 (Build37)
Map Location 10,654,427 - 10,774,460
singlet/doubletdoublet
Overlap geneCpa6, LOC433271
Upstream geneMybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156D11.bB6Ng01-156D11.g
ACCDH950780DH950781
length1,172169
definitionDH950780|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D11, 5' end.DH950781|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,773,265 - 10,774,460)(10,654,427 - 10,654,595)
sequence
gaattccaactggccttcgcagttagccactttctgctcaatgattgtta
gtgctcaatctgatgctatttagtcttttgcttggaagccccaagcaggg
aagagtctctctctactgggaactccaattcagtagggttccccagacaa
cgctgtttgcctggtatatcgtttgctccatcagtcagccagctcctgcc
atctcagatagatgttatgaacacctatttgatggtgttttatgtttcac
ctgcttttttttttatctgctacttgctaattattctttttctctttctt
gctatatataagttcacttattcaaaaccaaaattactgtggcaaatatt
gtagattgctctctggaccatacagaacatttattatgttatttgagaaa
catgattgtaaatgcatccttaaacatctgtgtcaatccctcactgttca
atacaactggtgacagctgactttaaatgtaacctcctgactcaccatct
cactgagacttcaatgggtgctttatttttgagagcccattaactaaatg
cataaagttgaggagtccctgggtctctgtctcacagttatagttgagtg
acacttgctaatgagtcctctgttgcatttgtatatgcttcaatcttcca
gtttcagccacccttcaaggtaatatctatgctctgaggtgagaagatca
catgctaataagagctgaaatacttttccaaaggagctaatgccagactg
attgatctactgatgtctgccttgataaaatgaatgatactcagccttca
caatcagaggtacaagagagcaagcttatccatgagggatttagcttctc
tttctgccagcgttcaatccagaaagcaatttccagcaaagccccatacc
aggttgctagggaagacaaaatccatgtagtggattgtggtgacactctg
ccctcagcaggcatatgctgcttctacagcatggaatactttctatttca
ttaaagcaaagcctgtggctcctgtgacttcttcaaaccaggagaagctt
agcacaccactttattaacttctttgtataggaaaacaatacttgcttag
aacttcttcccattattacctttacgtttgaattattctggagagccgac
gactgtgaaatcagttcaattc
cagggccaagaagtgggagtgggtgggtaggggagcagggtgaggggagg
gtatagggaactttctgcatagcatttgaaatataaataaagaaaatatc
taataaaatttttaaaaagggaaaataaaaagatagtggatcaaaataat
catgggaggtagagggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_10773265_10774460
seq2: B6Ng01-156D11.b_44_1215 (reverse)

seq1  GAATTGAACTGGATTTTTCAG----CTGCTGCTTCAGAATCATATCCTAT  46
      |||||||||| |||||  |||    | ||| || |||||| || ||    
seq2  GAATTGAACT-GATTTCACAGTCGTCGGCT-CTCCAGAATAAT-TC----  43

seq1  AACTGTAAAGTGTTAATTTATGTGAAGATGGTTCTAAGCAAGGTATTTTG  96
      ||  |||||| ||  | | ||| |||||  ||||||||||| |||||   
seq2  AAACGTAAAG-GT--AATAATGGGAAGA-AGTTCTAAGCAA-GTATT---  85

seq1  GTTTTCCCTATTACAAAG-AGTTTATAAAGTTGTGTGTGCCTTAAGCTTC  145
      ||||| |||| ||||||| |||| ||||||| |||||     ||||||||
seq2  GTTTT-CCTA-TACAAAGAAGTTAATAAAGTGGTGTG----CTAAGCTTC  129

seq1  TCTTGGTTTGGAAGGAAGTCACAGGGAGCCACAGGCTTTGCTTTTAATTG  195
      || |||||||  | ||||||||| ||||||||||||||||||||  | ||
seq2  TCCTGGTTTG--AAGAAGTCACA-GGAGCCACAGGCTTTGCTTT--AATG  174

seq1  AAATAGAAAGTTATTTCCATGCTGTAGAAGCAGCATATGCCTTGCTGAGG  245
      |||||||||||   ||||||||||||||||||||||||||| ||||||||
seq2  AAATAGAAAGT--ATTCCATGCTGTAGAAGCAGCATATGCC-TGCTGAGG  221

seq1  GCAGAGTGTCCACCACAATCCACTACATGGATTTTGTCTTCCCTAGCAAC  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGT-CACCACAATCCACTACATGGATTTTGTCTTCCCTAGCAAC  270

seq1  CTGGTATGGGGCTTTGCTGGAAATTGCTTTCTGGATTGAACGCTGGCAG-  344
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGTATGGGGCTTTGCTGGAAATTGCTTTCTGGATTGAACGCTGGCAGA  320

seq1  AAGGGAAGCTAAATCCCTCATGGATAAGCTTGCTCTCTTGTACCTCTGAT  394
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCTAAATCCCTCATGGATAAGCTTGCTCTCTTGTACCTCTGAT  370

seq1  TGTGAAGGCTGAGTATCATTCATTTTATCAAGGCAGACATCAGTAGATCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGCTGAGTATCATTCATTTTATCAAGGCAGACATCAGTAGATCA  420

seq1  ATCAGTCTGGCATTAGCTCCTTTGGAAAAGTATTTCAGCTCTTATTAGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTGGCATTAGCTCCTTTGGAAAAGTATTTCAGCTCTTATTAGCA  470

seq1  TGTGATCTTCTCACCTCAGAGCATAGATATTACCTTGAAGGGTGGCTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTTCTCACCTCAGAGCATAGATATTACCTTGAAGGGTGGCTGAA  520

seq1  ACTGGAAGATTGAAGCATATACAAATGCAACAGAGGACTCATTAGCAAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGATTGAAGCATATACAAATGCAACAGAGGACTCATTAGCAAGT  570

seq1  GTCACTCAACTATAACTGTGAGACAGAGACCCAGGGACTCCTCAACTTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAACTATAACTGTGAGACAGAGACCCAGGGACTCCTCAACTTTA  620

seq1  TGCATTTAGTTAATGGGCTCTCAAAAATAAAGCACCCATTGAAGTCTCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAGTTAATGGGCTCTCAAAAATAAAGCACCCATTGAAGTCTCAG  670

seq1  TGAGATGGTGAGTCAGGAGGTTACATTTAAAGTCAGCTGTCACCAGTTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGTGAGTCAGGAGGTTACATTTAAAGTCAGCTGTCACCAGTTGT  720

seq1  ATTGAACAGTGAGGGATTGACACAGATGTTTAAGGATGCATTTACAATCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAGTGAGGGATTGACACAGATGTTTAAGGATGCATTTACAATCA  770

seq1  TGTTTCTCAAATAACATAATAAATGTTCTGTATGGTCCAGAGAGCAATCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAAATAACATAATAAATGTTCTGTATGGTCCAGAGAGCAATCT  820

seq1  ACAATATTTGCCACAGTAATTTTGGTTTTGAATAAGTGAACTTATATATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTGCCACAGTAATTTTGGTTTTGAATAAGTGAACTTATATATA  870

seq1  GCAAGAAAGAGAAAAAGAATAATTAGCAAGTAGCAGATAAAAAAAAAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAGAGAAAAAGAATAATTAGCAAGTAGCAGATAAAAAAAAAAGC  920

seq1  AGGTGAAACATAAAACACCATCAAATAGGTGTTCATAACATCTATCTGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAACATAAAACACCATCAAATAGGTGTTCATAACATCTATCTGAG  970

seq1  ATGGCAGGAGCTGGCTGACTGATGGAGCAAACGATATACCAGGCAAACAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGAGCTGGCTGACTGATGGAGCAAACGATATACCAGGCAAACAG  1020

seq1  CGTTGTCTGGGGAACCCTACTGAATTGGAGTTCCCAGTAGAGAGAGACTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTCTGGGGAACCCTACTGAATTGGAGTTCCCAGTAGAGAGAGACTC  1070

seq1  TTCCCTGCTTGGGGCTTCCAAGCAAAAGACTAAATAGCATCAGATTGAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTTGGGGCTTCCAAGCAAAAGACTAAATAGCATCAGATTGAGC  1120

seq1  ACTAACAATCATTGAGCAGAAAGTGGCTAACTGCGAAGGCCAGTTGGAAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAATCATTGAGCAGAAAGTGGCTAACTGCGAAGGCCAGTTGGAAT  1170

seq1  TC  1196
      ||
seq2  TC  1172

seq1: chr1_10654427_10654595
seq2: B6Ng01-156D11.g_73_241

seq1  CAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGTGAGGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGTGAGGGGAGG  50

seq1  GTATAGGGAACTTTCTGCATAGCATTTGAAATATAAATAAAGAAAATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGGAACTTTCTGCATAGCATTTGAAATATAAATAAAGAAAATATC  100

seq1  TAATAAAATTTTTAAAAAGGGAAAAAAAAAAGAAAGTGGAACAAAATAAT  150
      ||||||||||||||||||||||||| ||||||| |||||| |||||||||
seq2  TAATAAAATTTTTAAAAAGGGAAAATAAAAAGATAGTGGATCAAAATAAT  150

seq1  CATGGGAGGTAGAGGGAGC  169
      |||||||||||||||||||
seq2  CATGGGAGGTAGAGGGAGC  169