BAC Information

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BAC

Clone NameB6Ng01-156E06
Chromosome1 (Build37)12 (Build37)
Map Location 100,061,912 - 100,062,46632,631,616 - 32,631,846
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156E06.bB6Ng01-156E06.g
ACCDH950815DH950816
length555482
definitionDH950815|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E06, 5' end.DH950816|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,061,912 - 100,062,466)(32,631,616 - 32,631,846)
sequence
gaattcatttcctggactggacctttttgaaggaccatcgtggtctgtgc
tgctgagtgggtcagtggtcctgaggtggtcaggaccaggttgatgtcta
gggtccgtgctgcaccctgaagccaggtcgatgtctgtgggtcatgctac
cactcgaggccataatttctgagtggcctgtgatgctatctgaggatgtg
gtgggactggggcccttgccactactgagggccatgactgggtctgaggt
cttacagcagccggagtctatgttggtgtctgtggcctgtgttaccactg
gaggttgttggtatgcccctggcctatgccgctgagccatgttgattttg
tgggctgtgctgcccacaggctgctgcagaggggtcatgactgggctgag
gtcctgctgcagctggggtctgtgatgatgtctgtggcccatgttaccac
caaggctatgtctgtgatctaagctgtagtctgaagccatgttgatgtga
gtagcctgcactgccacctgagactagatttgatatctgtggttggaact
ccctt
ttccaaagactcctagctagaaagtgacctcagtaaaaacacaggcattc
cacagaatccactgttaactattgtgctgtagtgggtccaaagccagcag
acttgctttttcctgttcagctgatttcactttacttcaaaatataaaat
ttttatgatggtaagtggtctaatattgctgtctcttgtgaggctacgct
ggggactagcaaacacagaagtggatgctcacagttagctattggatgga
tcacagggcccccaatggaggagctagagaaattacccaaggagctaaag
gaatctgcaaccctataggtggaacaacaatatgaactaaccagtacccc
ccaaagctcatgtctctagctgcatatgcagcagaagatggcctagttgg
ccatcagtggaagagaggcccattggacttgcaaactttatatacctcag
tacagggaaatgccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100061912_100062466
seq2: B6Ng01-156E06.b_48_602

seq1  GAATTCATTTCCTGGACTGGACCTTTTTGAAGGACCATCGTGGTCTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTGGACTGGACCTTTTTGAAGGACCATCGTGGTCTGTGC  50

seq1  TGCTGAGTGGGTCAGTGGTCCTGAGGTGGTCAGGACCAGGTTGATGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTGGGTCAGTGGTCCTGAGGTGGTCAGGACCAGGTTGATGTCTA  100

seq1  GGGTCCGTGCTGCACCCTGAAGCCAGGTCGATGTCTGTGGGTCATGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCGTGCTGCACCCTGAAGCCAGGTCGATGTCTGTGGGTCATGCTAC  150

seq1  CACTCGAGGCCATAATTTCTGAGTGGCCTGTGATGCTATCTGAGGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGAGGCCATAATTTCTGAGTGGCCTGTGATGCTATCTGAGGATGTG  200

seq1  GTGGGACTGGGGCCCTTGCCACTACTGAGGGCCATGACTGGGTCTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACTGGGGCCCTTGCCACTACTGAGGGCCATGACTGGGTCTGAGGT  250

seq1  CTTACAGCAGCCGGAGTCTATGTTGGTGTCTGTGGCCTGTGTTACCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCAGCCGGAGTCTATGTTGGTGTCTGTGGCCTGTGTTACCACTG  300

seq1  GAGGTTGTTGGTATGCCCCTGGCCTATGCCGCTGAGCCATGTTGATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGTTGGTATGCCCCTGGCCTATGCCGCTGAGCCATGTTGATTTTG  350

seq1  TGGGCTGTGCTGCCCACAGGCTGCTGCAGAGGGGTCATGACTGGGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTGCTGCCCACAGGCTGCTGCAGAGGGGTCATGACTGGGCTGAG  400

seq1  GTCCTGCTGCAGCTGGGGTCTGTGATGATGTCTGTGGCCCATGTTACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTGCAGCTGGGGTCTGTGATGATGTCTGTGGCCCATGTTACCAC  450

seq1  CAAGGCTATGTCTGTGATCTAAGCTGTAGTCTGAAGCCATGTTGATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTATGTCTGTGATCTAAGCTGTAGTCTGAAGCCATGTTGATGTGA  500

seq1  GTAGCCTGCACTGCCACCTGAGACTAGATTTGATATCTGTGGTTGGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGCACTGCCACCTGAGACTAGATTTGATATCTGTGGTTGGAACT  550

seq1  CCCTT  555
      |||||
seq2  CCCTT  555

seq1: chr12_32631616_32631846
seq2: B6Ng01-156E06.g_278_554 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCATTTCCCTGTACTGAGGTATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      ||||| || ||||||||||| |||||||||                ||||
seq2  GCAAGTCCAATGGGCCTCTC-TTCCACTGATGGCCAACTAGGCCATCTTC  99

seq1  TGATACATACGCAGCTAGAGACACGAGC-TCCGGGGGTACTGGTCAGTTC  102
      || | |||| ||||||||||||| |||| |  |||||||||||| |||||
seq2  TGCTGCATATGCAGCTAGAGACATGAGCTTTGGGGGGTACTGGTTAGTTC  149

seq1  ATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTA  152
      ||| ||||||||||||||||||||||||||  ||||||||||||||||||
seq2  ATATTGTTGTTCCACCTATAGGGTTGCAGATTCCTTTAGCTCCTTGGGTA  199

seq1  CTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGA  202
       |||||||| |||||||||||||| ||||||||||| ||||||||||| |
seq2  ATTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTAA  248

seq1  CTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||||||||||||||||||||||||||
seq2  CTGTGAGCATCCACTTCTGTGTTTGCTAG  277