BAC Information

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BAC

Clone NameB6Ng01-156H02
Chromosome1 (Build37)
Map Location 127,308,500 - 127,476,324
singlet/doubletdoublet
Overlap geneActr3, Slc35f5
Upstream geneLOC666998
Downstream geneLypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156H02.bB6Ng01-156H02.g
ACCDH950946DH950947
length1,160232
definitionDH950946|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H02, 5' end.DH950947|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,475,160 - 127,476,324)(127,308,500 - 127,308,731)
sequence
gaattctattaactgcctttttttttggtatcacttacaaaggaaaagtt
atattaaaaaaagaaaagaaaaaaactttttaaaagaccctgttactggg
ttagcaaagtgcctcagccagtagagaagtgcttgcttccaagcctggaa
acctgaattcaatccctgggacccacagtgaaaggatagatttatttctt
ataggttgttctctgaccaccacatgtaagatgtgcaacatactcagaca
cacacacgtgcacacacacgtgcacacacacgtgcacacacacacatgaa
atgaatggaataagctaagagcctgctagtgcccaggctgtgtgtgcatg
catctgcaggccatgcaggaagcacaaagcctgcctaaccgccgtagcag
cagggcagttgggttcttacctattgtgtctcttccagcagacttttcag
acccagacaggttcaccagcaccacacctccaatgctgtgagagcaaaac
tcgttaatgatgagcaaaatagtaagctcctaagagactaatcatcaaga
ttaaacactaagaacccatcttaacttcgggtaaaactgtctgagaactt
ggtgatttcattgatgagtgctcatgagctcatcagcacagtacagtaga
gctgcacggacagccagtcctcacaaatgaacactgatgacttacaggaa
gcaattcttactaacagcccattttgcatgggaaaactgaggcctgaaga
ggtaaggtgtcttgacaaagaccacataacagggatgggacacaggcagc
ctggccccggagtccatcatgcttacatgtcttttagttagggagaaggg
atactggtcatcccttcgccaagccttcttttcagagagagaaataagcc
aaacccatataaagctagaaatggcactcttcctgcagtgaaacttaaac
agaaaagctgtcttacacatttggccagtcctgttaaccacatgttttaa
tgggcaaaggaagacacctggaaagctgtgagaagccagaggacattgat
catctaacttacttgtggaatctagaatggacaaataagtgtggaaacag
atggagttagttctagatcttcaaagaagctgcaaggtctctggattcag
gggagcttat
taggttattagtcaatccacaagtacatctgtgaggcttagaattcataa
ggatacacaggatacacaccacaccatgtgctagcctagcctacatctgg
ttttcaacatcagagtgtgctacactacttcatgacactgtttctttgaa
aaattgggttgccagctgttgctatataaaaaccaaatactgcacacata
ctcccaaatccaggaagggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_127475160_127476324
seq2: B6Ng01-156H02.b_46_1205 (reverse)

seq1  ATAAGCTCCCCGGAAATCAGAAGGCCTTGCAGGCTCTTTGAAGA-CTAGA  49
      ||||||||||| |||  ||| || ||||||||  |||||||||| |||||
seq2  ATAAGCTCCCCTGAATCCAG-AGACCTTGCAGCTTCTTTGAAGATCTAGA  49

seq1  ACT-ACT-CATCTTGTTCCCACACTATTTTGCTCATTCTAGATTCCCAAC  97
      ||| ||| |||| |||| |||||||  ||||  |||||||||||||  ||
seq2  ACTAACTCCATC-TGTTTCCACACTTATTTGTCCATTCTAGATTCC--AC  96

seq1  AAGTAAGTTAGATGAATCAATGTCCTCTGGCTTCTCAACAGCTTT-CAGG  146
      |||||||||||||| ||||||||||||||||||||| |||||||| ||||
seq2  AAGTAAGTTAGATG-ATCAATGTCCTCTGGCTTCTC-ACAGCTTTCCAGG  144

seq1  TGTCTTCCTTTTGCCCATTAAAACCATGTGGTTAACAGGACTGGCCAAAT  196
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCTTCC-TTTGCCCATTAAAA-CATGTGGTTAACAGGACTGGCCAAAT  192

seq1  GTGTAAGACAGCTTTTCTGTTTAGGTTTCACCTGCAGGAAGAGTGCCATT  246
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  GTGTAAGACAGCTTTTCTGTTTAAGTTTCA-CTGCAGGAAGAGTGCCATT  241

seq1  TCTAGCTTTATATGGGTTTGGCTTATTTCTCTCTCTG-AAAGAAGGCTTG  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTAGCTTTATATGGGTTTGGCTTATTTCTCTCTCTGAAAAGAAGGCTTG  291

seq1  GCGAAGGGATGACCAGTTATCCCTTCTCCCTAACTAAAAGACATGTAAGC  345
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCGAAGGGATGACCAG-TATCCCTTCTCCCTAACTAAAAGACATGTAAGC  340

seq1  ATGATGGACTCCGGGGCCAGGCTGCCTGTGTCCCATCCCTGTTATGTGGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGACTCCGGGGCCAGGCTGCCTGTGTCCCATCCCTGTTATGTGGT  390

seq1  CTTTGTCAAGACACCTTACCTCTTCAGGCCTCAGTTTTCCCATGCAAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAAGACACCTTACCTCTTCAGGCCTCAGTTTTCCCATGCAAAAT  440

seq1  GGGCTGTTAGTAAGAATTGCTTCCTGTAAGTCATCAGTGTTCATTTGTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTAGTAAGAATTGCTTCCTGTAAGTCATCAGTGTTCATTTGTGA  490

seq1  GGACTGGCTGTCCGTGCAGCTCTACTGTACTGTGCTGATGAGCTCATGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCTGTCCGTGCAGCTCTACTGTACTGTGCTGATGAGCTCATGAG  540

seq1  CACTCATCAATGAAATCACCAAGTTCTCAGACAGTTTTACCCGAAGTTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCAATGAAATCACCAAGTTCTCAGACAGTTTTACCCGAAGTTAA  590

seq1  GATGGGTTCTTAGTGTTTAATCTTGATGATTAGTCTCTTAGGAGCTTACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTCTTAGTGTTTAATCTTGATGATTAGTCTCTTAGGAGCTTACT  640

seq1  ATTTTGCTCATCATTAACGAGTTTTGCTCTCACAGCATTGGAGGTGTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCATCATTAACGAGTTTTGCTCTCACAGCATTGGAGGTGTGGT  690

seq1  GCTGGTGAACCTGTCTGGGTCTGAAAAGTCTGCTGGAAGAGACACAATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAACCTGTCTGGGTCTGAAAAGTCTGCTGGAAGAGACACAATAG  740

seq1  GTAAGAACCCAACTGCCCTGCTGCTACGGCGGTTAGGCAGGCTTTGTGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAACCCAACTGCCCTGCTGCTACGGCGGTTAGGCAGGCTTTGTGCT  790

seq1  TCCTGCATGGCCTGCAGATGCATGCACACACAGCCTGGGCACTAGCAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATGGCCTGCAGATGCATGCACACACAGCCTGGGCACTAGCAGGC  840

seq1  TCTTAGCTTATTCCATTCATTTCATGTGTGTGTGTGCACGTGTGTGTGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTTATTCCATTCATTTCATGTGTGTGTGTGCACGTGTGTGTGCA  890

seq1  CGTGTGTGTGCACGTGTGTGTGTCTGAGTATGTTGCACATCTTACATGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTGCACGTGTGTGTGTCTGAGTATGTTGCACATCTTACATGTG  940

seq1  GTGGTCAGAGAACAACCTATAAGAAATAAATCTATCCTTTCACTGTGGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGAGAACAACCTATAAGAAATAAATCTATCCTTTCACTGTGGGT  990

seq1  CCCAGGGATTGAATTCAGGTTTCCAGGCTTGGAAGCAAGCACTTCTCTAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGATTGAATTCAGGTTTCCAGGCTTGGAAGCAAGCACTTCTCTAC  1040

seq1  TGGCTGAGGCACTTTGCTAACCCAGTAACAGGGTCTTTTAAAAAGTTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGGCACTTTGCTAACCCAGTAACAGGGTCTTTTAAAAAGTTTTT  1090

seq1  TTCTTTTCTTTTTTTAATATAACTTTTCCTTTGTAAGTGATACCAAAAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTTTTAATATAACTTTTCCTTTGTAAGTGATACCAAAAAA  1140

seq1  AAAGGCAGTTAATAGAATTC  1165
      ||||||||||||||||||||
seq2  AAAGGCAGTTAATAGAATTC  1160

seq1: chr1_127308500_127308731
seq2: B6Ng01-156H02.g_73_304

seq1  TAGGTTATTAGTCAATCCACAAGTACATCTGTGAGGCTTAGAATTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTATTAGTCAATCCACAAGTACATCTGTGAGGCTTAGAATTCATAA  50

seq1  GGATACACAGGATACACACCACACCATGTGCTAGCCTAGCCTACATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACAGGATACACACCACACCATGTGCTAGCCTAGCCTACATCTGG  100

seq1  TTTTCAACATCAGAGTGTGCTACACTACTTCATGACACTGTTTCTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACATCAGAGTGTGCTACACTACTTCATGACACTGTTTCTTTGAA  150

seq1  AAATTGGGTTGCCAGCTGTTGCTATATAAAAACCAAATACTGCACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGTTGCCAGCTGTTGCTATATAAAAACCAAATACTGCACACATA  200

seq1  CTCCCAAATCCAGGAAGGGAGGGAGGGAGGGA  232
      ||||||||||||||||||||||||||||||||
seq2  CTCCCAAATCCAGGAAGGGAGGGAGGGAGGGA  232