BAC Information

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BAC

Clone NameB6Ng01-156I21
Chromosome1 (Build37)
Map Location 7,859,444 - 8,003,310
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156I21.bB6Ng01-156I21.g
ACCDH951028DH951029
length7211,085
definitionDH951028|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I21, 5' end.DH951029|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,002,778 - 8,003,310)(7,859,444 - 7,860,552)
sequence
gaattcctcagaagagaaagagttgggacattgcaagagccagaagctag
gacactaggattacaaggtttttgaacaactaagtatataagtgagcaca
tggcatacatggatccacaccagtttttttgcatatataaaacagctgtt
aatttagtatttttatgggacgcctgactatgagaaggagtaggtctcta
gctcttgtacctattcttgtcattcttttcctcctgctgacttgcttttt
tcaacttccacatgatagcttttgcataatcttatttagttttgtaatat
tgtttgttgtctcttaaaggcctcctcttttctgagagacaaaaagggaa
tgcatctaaatgggagggtagatggttaggaactggtggtagtagagggg
ctggaaactttaatcagcatattttgtatgaaaattatctatctttaata
aaagaaaaacaaacatgtatatgattatttttagttaaaaaataatttat
tttatataacaataatgtattttgaggacctttatatccctgcaatttcc
aattcttcaataaaagaaaattagaagagcaagttcactttgaaatatct
attattaatattgaaatcaatttttaatttttttaaattaaaatctatac
tttaaattggctttgttaaaccattaatgctagaagcaaataagctacca
gctactctgcctgcctcaaaa

gaattcctaaagtccatatagaaactaccagaagagtagaatgaggggag
ggtaaaggagggagaagtgaatttcttctgttataggcagcaaggatgga
ggatagcttgaggaaagagaagctatgcagaatttgtcttaaggtttgga
aaagtgtttaagattttctttttattctcctgtccttcaatgtctctctt
taattcttacattgcttccaaaattctcatgtccacgtcctgtaagttag
caattttgtcatttcttctcttagaaacacttctaaattctaataaagca
gactgcccactgatttgtttgttttattgcatagatcttctagttttaca
cataaaattactaatttttgaatatcaataattctccattgagagaacca
ttaagccaagctatctttcagtgtgtaaatctctctattttccaaaatgc
tttcaaatgttaaaattgtgtaactattatatataaaacccgaagtacca
gatggcattatctctacacacaacctatcttcttctgtttgaaaacctcc
tcttcccctttatgtccccccttcctcatctttcctccttttctctgtgt
cttctctctcttttctttttcatgaaaattcaagtattttctatgctagc
tcagagatatatgatttggatcaggcctatcttttatttggggcattaga
tttatcaacttttatccaatacgtattattatccactgaatgtcctgttg
ctattataaactatcctggacagtgcctctggacatccacattattggat
gacacaattggatttaggctattaatagccaggtagctgctcataacatt
actgtgctaaaggatgcaagaatgcattaagtataagcagaagattcaga
gaacacagaataaatgacttttgaggagtgtcagagacaaggcctaattc
cacaaccagctttcaagcaaataacccagaaaaacaaattgcttcaaagg
ctaaagtcatttgtttcaatgacctaaaactatttatctaccgaaacaac
ctctccctgaatccctagacatacacattgaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_8002778_8003310
seq2: B6Ng01-156I21.b_225_764 (reverse)

seq1  TTTTGAGGCAGGCAGAGTAGCTGGTAGC-TATTTGCTTCTAGCATTAATG  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTGAGGCAGGCAGAGTAGCTGGTAGCTTATTTGCTTCTAGCATTAATG  50

seq1  GTTTAACAAAGCCAATTT-AAGTATAGATTTTAATT--AAAAAATT-AAA  95
      |||||||||||||||||| |||||||||||||||||  |||||||| |||
seq2  GTTTAACAAAGCCAATTTAAAGTATAGATTTTAATTTAAAAAAATTAAAA  100

seq1  ATTGATTTCAATATTAATAATAGATATTTC-AAGTGAACTTGCTCTTCTA  144
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTGATTTCAATATTAATAATAGATATTTCAAAGTGAACTTGCTCTTCTA  150

seq1  A-TTTCTTTTATTGAAGAATTGGAAATTGCAGGGATATAAAGGTCCTCAA  193
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTATTGAAGAATTGGAAATTGCAGGGATATAAAGGTCCTCAA  200

seq1  AATACATTATTGTTATATAAAATAAATTATTTTTTAACTAAAAATAATCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTATTGTTATATAAAATAAATTATTTTTTAACTAAAAATAATCA  250

seq1  TATACATGTTTGTTTTTCTTTTATTAAAGATAGATAATTTTCATACAAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTTTGTTTTTCTTTTATTAAAGATAGATAATTTTCATACAAAA  300

seq1  TATGCTGATTAAAGTTTCCAGCCCCTCTACTACCACCAGTTCCTAACCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATTAAAGTTTCCAGCCCCTCTACTACCACCAGTTCCTAACCAT  350

seq1  CTACCCTCCCATTTAGATGCATTCCCTTTTTGTCTCTCAGAAAAGAGGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTCCCATTTAGATGCATTCCCTTTTTGTCTCTCAGAAAAGAGGAG  400

seq1  GCCTTTAAGAGACAACAAACAATATTACAAAACTAAATAAGATTATGCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAAGAGACAACAAACAATATTACAAAACTAAATAAGATTATGCAA  450

seq1  AAGCTATCATGTGGAAGTTGAAAAAAGCAAGTCAGCAGGAGGAAAAGAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCATGTGGAAGTTGAAAAAAGCAAGTCAGCAGGAGGAAAAGAAT  500

seq1  GACAAGAATAGGTACAAGAGCTAGAGACCTACTCCTTCTC  533
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAATAGGTACAAGAGCTAGAGACCTACTCCTTCTC  540


seq1: chr1_7859444_7860552
seq2: B6Ng01-156I21.g_69_1153

seq1  GAATTCCTAAAGTCCATATAGAAACTACCAGAAGAGTAGAATGAGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAGTCCATATAGAAACTACCAGAAGAGTAGAATGAGGGGAG  50

seq1  GGTAAAGGAGGGAGAAGTGAATTTCTTCTGTTATAGGCAGCAAGGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGAGGGAGAAGTGAATTTCTTCTGTTATAGGCAGCAAGGATGGA  100

seq1  GGATAGCTTGAGGAAAGAGAAGCTATGCAGAATTTGTCTTAAGGTTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTTGAGGAAAGAGAAGCTATGCAGAATTTGTCTTAAGGTTTGGA  150

seq1  AAAGTGTTTAAGATTTTCTTTTTATTCTCCTGTCCTTCAATGTCTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTAAGATTTTCTTTTTATTCTCCTGTCCTTCAATGTCTCTCTT  200

seq1  TAATTCTTACATTGCTTCCAAAATTCTCATGTCCACGTCCTGTAAGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTACATTGCTTCCAAAATTCTCATGTCCACGTCCTGTAAGTTAG  250

seq1  CAATTTTGTCATTTCTTCTCTTAGAAACACTTCTAAATTCTAATAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTCATTTCTTCTCTTAGAAACACTTCTAAATTCTAATAAAGCA  300

seq1  GACTGCCCACTGATTTGTTTGTTTTATTGCATAGATCTTCTAGTTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCACTGATTTGTTTGTTTTATTGCATAGATCTTCTAGTTTTACA  350

seq1  CATAAAATTACTAATTTTTGAATATCAATAATTCTCCATTGAGAGAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTACTAATTTTTGAATATCAATAATTCTCCATTGAGAGAACCA  400

seq1  TTAAGCCAAGCTATCTTTCAGTGTGTAAATCTCTCTATTTTCCAAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCAAGCTATCTTTCAGTGTGTAAATCTCTCTATTTTCCAAAATGC  450

seq1  TTTCAAATGTTAAAATTGTGTAACTATTATATATAAAACCCGAAGTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGTTAAAATTGTGTAACTATTATATATAAAACCCGAAGTACCA  500

seq1  GATGGCATTATCTCTACACACAACCTATCTTCTTCTGTTTGAAAACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATTATCTCTACACACAACCTATCTTCTTCTGTTTGAAAACCTCC  550

seq1  TCTTCCCCTTTATGTCCCCCCTTCCTCATCTTTCCTCCTTTTCTCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTTTATGTCCCCCCTTCCTCATCTTTCCTCCTTTTCTCTGTGT  600

seq1  CTTCTCTCTCTTTTCTTTTTCATGAAAATTCAAGTATTTTCTATGCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTCTTTTCTTTTTCATGAAAATTCAAGTATTTTCTATGCTAGC  650

seq1  TCAGAGATATATGATTTGGATCAGGCCTATCTTTTATTTGGGGCATTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATATATGATTTGGATCAGGCCTATCTTTTATTTGGGGCATTAGA  700

seq1  TTTATCAACTTTTATCCAATACGTATTATTATCCACTGAATGTCCTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAACTTTTATCCAATACGTATTATTATCCACTGAATGTCCTGTTG  750

seq1  CTATTATAAACTATCCTGGACAGTGCCTCTGGACATCCACATTATTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATAAACTATCCTGGACAGTGCCTCTGGACATCCACATTATTGGAT  800

seq1  GACACAATTGGATTTTAGGCTATTAATAGCCAGGTAGCTGCTCATAACAT  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACACAATTGGA-TTTAGGCTATTAATAGCCAGGTAGCTGCTCATAACAT  849

seq1  TACTGTGCTAAAGGATGCAAGAATGCATTAAGTATAAGCAGAAGATTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCTAAAGGATGCAAGAATGCATTAAGTATAAGCAGAAGATTCAG  899

seq1  AGAAACACAGAAATAAATGAACATTTGAGGAGTGTCAGAAGACAAAGGCC  950
      || ||||||| |||||||| || ||||||||||||||| |||| ||||||
seq2  AG-AACACAG-AATAAATG-ACTTTTGAGGAGTGTCAG-AGAC-AAGGCC  944

seq1  TAATTCCAACAACCAAGCCTTCCAAAAGCAAATAAAACCAAGAAAAAACA  1000
      ||||||| |||||| ||| |||   ||||||||  |||| || |||||||
seq2  TAATTCC-ACAACC-AGCTTTC---AAGCAAAT--AACCCAG-AAAAACA  986

seq1  AAATGCCTTCAAAGGCTAAAAGTTCATTTGTTTCCAAATGACCTAAAAAC  1050
      || || ||||||||||||||   |||||||||||  |||||||| |||||
seq2  AATTG-CTTCAAAGGCTAAA--GTCATTTGTTTC--AATGACCT-AAAAC  1030

seq1  CAATTATACTACCAGAAACCAACACTCACCTGAATCACTAAGACAAACAC  1100
       | |||| ||||| ||||| | | ||| |||||||| || ||||| ||||
seq2  TATTTAT-CTACC-GAAACAACCTCTC-CCTGAATCCCT-AGACATACAC  1076

seq1  ATTGAAAGC  1109
      |||||||||
seq2  ATTGAAAGC  1085


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