BAC Information

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BAC

Clone NameB6Ng01-156O09
Chromosome1 (Build37)
Map Location 19,075,092 - 19,076,244
singlet/doubletsinglet
Overlap genenone
Upstream geneCrisp4, EG574082, EG654460, Defb17, LOC383499, EG435611, LOC100040189
Downstream geneTcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156O09.bB6Ng01-156O09.g
ACCDH951278DH951279
length1,1731,159
definitionDH951278|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O09, 5' end.DH951279|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
cttcatagcagtcttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaatacatgaaactcaag
aagaatgaagactgaagtgtggacactatgtccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagcgatccaccccataatc
agcatccaaacgctgacaccattgcatacactagaaagattttatcgaca
ggaccagatgtagctgtctcttgtgagactatgccgggcctagcaaacac
ataagtggatgctcacagtcagctaatggatggatcatagggctcccatg
gaggagctagagtccaagagctaaagggatctgcagccctataggtggaa
caacattatgactatcagtaccccggagctcttgacttctagctgcatat
atattaaagatggcctagtcggccatcacttgcaagagaggccaatggac
ttgcaaccttatattgctcagtacatggacacgcaaggccaaaaggggag
tggggtgggcagggagatggtgg
gaattctattctttagatgttagtaaaacacattacttctctataattta
agctaagtggaatcaaaacaattaagtgatcactgaacttatatcaaata
ctgttttggagagtgatgaagacattttatatttagtgtatagaatgaca
ttggatgggggctggggacattgcttagtggttagtgcttttcattcttc
tcgaggatcagcttctatgttaggtggcccacaacttctgtaactctagt
cttatgtgctccaatagcttcttgtggcttccagtggcacctatatagaa
gtggcaaacacacacacacacacacacacacacacacacacacacacaca
cacacgcacacacacgcagaaatgttaaaaaaatattgaagtattattgg
taatttttaaagggaactgaatatttttaggtgagggcagagctcatata
tgaaatacaagttaaaagttcaaaatcaaaaaaaattcaaaatcaaacta
tgatgaaatgcaaaatatggtaacaaaatatgacttcctggagtgaaaca
gacaatggcataggttatgtttcctaggacatggttgaaaggaagaacct
aaaacagaacaatcatagccctagggactactatgtgacattaaaaatca
aagttatggaatcataataattcattcacattttcaacatctaactgttc
ttccatagataatttttctttcctcttacttttctaccaggacatgctac
acactttgttctttataaaacaccccactccccgccccttgaacctctca
tgttttctctgttctaaagaaggaaatgacacactcaaagcataaaagct
gaacttcccacgggacgacttggatggaaaccagatgagagagatacatt
aaggccagaagtgtgggtcagagcatatcaaaccgaaagcatgaagctag
agtaaagtttggggggtattgtatgttttcagatcatttaaggctagccc
tacagttaaaagggtgtccctaatagaaggataattttccagacagtgga
gcagtaagttgagtatattgtaaggtatcttagcatacatgcctgactgg
acaaattcaaatggatcaggaaatatggggtagaatactcttaatttaag
gaacttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19075092_19076244
seq2: B6Ng01-156O09.g_69_1227 (reverse)

seq1  ATTACAGTTACTTAAATTAAGAGTTATTCTACCCAATTTATTTCTGATCA  50
      |||| |||| ||||||||||||| |||||||||| || | || |||||| 
seq2  ATTA-AGTTCCTTAAATTAAGAG-TATTCTACCCCATAT-TTCCTGATCC  47

seq1  TATCTAATTTGT-CAGTCA-GCATCTATGCTAGATTACTTTAAAATATAC  98
        |  ||||||| |||||| |||| |||||||   ||| ||| |||||||
seq2  ATTTGAATTTGTCCAGTCAGGCATGTATGCTAAGATACCTTACAATATAC  97

seq1  TCAATTTACTGCT-CACTGTCTAGAAATTTATCCTTTTA-TAGGGACACC  146
      |||| |||||||| |||||||| |||| |||||||| || ||||||||||
seq2  TCAACTTACTGCTCCACTGTCTGGAAAATTATCCTTCTATTAGGGACACC  147

seq1  --TTTAACTTGTAGGGCTAGCCTTAAATGATCTG-ATACATACAATACCC  193
        |||||| ||||||||||||||||||||||||| | |||||||||||||
seq2  CTTTTAAC-TGTAGGGCTAGCCTTAAATGATCTGAAAACATACAATACCC  196

seq1  CCCAAACTTTACTCTAGCTTCATGCTTTCGGTTTGATATGCTCTGACCCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTTTACTCTAGCTTCATGCTTTCGGTTTGATATGCTCTGACCCA  246

seq1  CACTTCTGGCC-TAATGTATCTCTCTCATCTGG-TTCCATCCAAGTCGTC  291
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  CACTTCTGGCCTTAATGTATCTCTCTCATCTGGTTTCCATCCAAGTCGTC  296

seq1  CCGTGGGAAGTTCAGC-TTTATGCTTTGAGTGTGTCATTTCCTTCTTTAG  340
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCGTGGGAAGTTCAGCTTTTATGCTTTGAGTGTGTCATTTCCTTCTTTAG  346

seq1  AACAGAGAAAACATGAGAGGTTCAAGGGGCGGGGAGTGGGGTGTTTTATA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAAACATGAGAGGTTCAAGGGGCGGGGAGTGGGGTGTTTTATA  396

seq1  AAGAACAAAGTGTGTAGCATGTCCTGGTAGAAAAGTAAGAGGAAAGAAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAGTGTGTAGCATGTCCTGGTAGAAAAGTAAGAGGAAAGAAAA  446

seq1  ATTATCTATGGAAGAACAGTTAGATGTTGAAAATGTGAATGAATTATTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTATGGAAGAACAGTTAGATGTTGAAAATGTGAATGAATTATTAT  496

seq1  GATTCCATAACTTTGATTTTTAATGTCACATAGTAGTCCCTAGGGCTATG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATAACTTTGATTTTTAATGTCACATAGTAGTCCCTAGGGCTATG  546

seq1  ATTGTTCTGTTTTAGGTTCTTCCTTTCAACCATGTCCTAGGAAACATAAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTGTTTTAGGTTCTTCCTTTCAACCATGTCCTAGGAAACATAAC  596

seq1  CTATGCCATTGTCTGTTTCACTCCAGGAAGTCATATTTTGTTACCATATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCATTGTCTGTTTCACTCCAGGAAGTCATATTTTGTTACCATATT  646

seq1  TTGCATTTCATCATAGTTTGATTTTGAATTTTTTTTGATTTTGAACTTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCATCATAGTTTGATTTTGAATTTTTTTTGATTTTGAACTTTT  696

seq1  AACTTGTATTTCATATATGAGCTCTGCCCTCACCTAAAAATATTCAGTTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTATTTCATATATGAGCTCTGCCCTCACCTAAAAATATTCAGTTC  746

seq1  CCTTTAAAAATTACCAATAATACTTCAATATTTTTTTAACATTTCTGCGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAATTACCAATAATACTTCAATATTTTTTTAACATTTCTGCGT  796

seq1  GTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  846

seq1  GTGTGTTTGCCACTTCTATATAGGTGCCACTGGAAGCCACAAGAAGCTAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGCCACTTCTATATAGGTGCCACTGGAAGCCACAAGAAGCTAT  896

seq1  TGGAGCACATAAGACTAGAGTTACAGAAGTTGTGGGCCACCTAACATAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCACATAAGACTAGAGTTACAGAAGTTGTGGGCCACCTAACATAGA  946

seq1  AGCTGATCCTCGAGAAGAATGAAAAGCACTAACCACTAAGCAATGTCCCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATCCTCGAGAAGAATGAAAAGCACTAACCACTAAGCAATGTCCCC  996

seq1  AGCCCCCATCCAATGTCATTCTATACACTAAATATAAAATGTCTTCATCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCATCCAATGTCATTCTATACACTAAATATAAAATGTCTTCATCA  1046

seq1  CTCTCCAAAACAGTATTTGATATAAGTTCAGTGATCACTTAATTGTTTTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAAACAGTATTTGATATAAGTTCAGTGATCACTTAATTGTTTTG  1096

seq1  ATTCCACTTAGCTTAAATTATAGAGAAGTAATGTGTTTTACTAACATCTA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTTAGCTTAAATTATAGAGAAGTAATGTGTTTTACTAACATCTA  1146

seq1  AAGAATAGAATTC  1153
      |||||||||||||
seq2  AAGAATAGAATTC  1159