BAC Information

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BAC

Clone NameB6Ng01-156O13
Chromosome1 (Build37)
Map Location 27,622,476 - 27,774,476
singlet/doubletdoublet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281, EG665903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156O13.bB6Ng01-156O13.g
ACCDH951286DH951287
length1,122654
definitionDH951286|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O13, 5' end.DH951287|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,773,340 - 27,774,476)(27,622,476 - 27,623,125)
sequence
gaattcacaacagaagaatctcaaatggctgagaagcacctaaagaaatg
ttcaaactccttagtcatcagagaaatgcaaatcaaaatgagcatccttc
tatatgtgattttctcttcactaactttacaggttaaataggggcattgg
attagcagtgaatctatgccaattggatatcttaaatttaaacaatttcc
tgtttttctatttttcctttttggctttttattttgtgttactctccact
tcttttttaatttttctattgttttcattggatattttatttatttacag
ttcaaatgttattttcttttcctagtttcccctttagaactcccctatca
catctggttcctatgaagatactttcctacctgtccacccacttctgcct
ccctgccctggcattcccctacactggcgcattgagccttcccagtacca
aaagcctctcctgccatcgatgtcagacaagacctcctctgctatataca
ctgctggagccacagaccacatgaagctcaaaaagtaagaaaagcaatgt
gtgagtgcttcagtccttcttagaagggggaacaaaatactcaagggagg
aaatatggagactaaatgtagagcacagactgaaggaaaggccatacagg
gactgccccacctggggatccatcccatatacaattaccacacccagata
ctattgtggatgccaagaattgcttgctaacaggagcctgatatagatgt
ctcctgtgcagctctgccagaacctgagaaatagagacagatgttcacag
ccaaccattagtctgagttagggaaaggactgaaagagctgaaagtggtt
gccaaccataggatgaacaatattatatttttctaaagagacaaaatcaa
attgaaaacaatgatttatgtaagagcatttatatctcatatcagtttat
tttggtattttaaaaatcaaactctttctgtttaaattattttctgtcac
tttgtggtattagctatcaaaattttctgtacaatgcacaacgtccctct
ttgtacactagctatttatctcttcttcactttcctactgttctgagatg
aagtgttgtagcagaactatat
gaattcaagtatccagcctgaactcatctcttttagatgctaactattgg
taatagaaaagctgttcatgacagtgaattgattttttaaaaataactgt
gcatgagagagagagagagagagacagagagagagagagagagagagaga
gagagagagagagagagagagagagagaagatagacataaagatatatag
agatggaagaagaaaggatggaagacgatgtcaaataaactgttatcagt
gtatcacacatatacatgtaatacacacacacacacacacatatatatat
gtgtgtgtgtgtgtgatattttccaaatctgtatgtaaagccagttcagt
atttgaataaaatatacatcttcacaaaactgtaaaatcaagttgcctaa
acatattattggcaaatatgagtaggaaacacagaagacctttgttattg
ccagacatttgactaaggaaatcagtgaatgtatatcaatagataatcat
aagcttacaaaaaccattaggagatgtctgggactttttgtttccttgct
ttcttttttccatttttttttaccttgattgcacagtttttgagagcttg
attacatgaaattgggtagatgattatgtcatgtcaaaatgtttttgggt
tata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_27773340_27774476
seq2: B6Ng01-156O13.b_47_1168 (reverse)

seq1  ATATATGTTCTTGCTACAACCACTTCCATCTCAGAACAGTAGGGAAGTGA  50
      ||||| |||| |||||||| ||||| ||||||||||||||||| ||||||
seq2  ATATA-GTTC-TGCTACAA-CACTT-CATCTCAGAACAGTAGGAAAGTGA  46

seq1  AGGAGGAGATAGATAGGCTAGTGTACAAAGAGGGACGTTGTTGCATTGTA  100
      | || |||||| ||| |||||||||||||||||||||||| |||||||||
seq2  A-GAAGAGATAAATA-GCTAGTGTACAAAGAGGGACGTTG-TGCATTGTA  93

seq1  CAGGAAATTTTTGATAGCTAATACCACAAAGTGACAGAAAATAATTTAAA  150
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GAAAATTTTGATAGCTAATACCACAAAGTGACAGAAAATAATTTAAA  142

seq1  ACAAGAAAGGAGTTTTGATTTTTAAAATATCAAAAATTAAACTGATATGA  200
         ||||| ||| |||||||||||||||| |||||  |||||||||||||
seq2  --CAGAAA-GAG-TTTGATTTTTAAAATACCAAAA--TAAACTGATATGA  186

seq1  GATATAAATTGCTCTTACATAAATCATTGTTTTCAATTTGATTTTGTCTC  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAA-TGCTCTTACATAAATCATTGTTTTCAATTTGATTTTGTCTC  235

seq1  TTTAGAAAAATATAATATTGTTCATCCTATGGTTGGCAACCACTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAATATAATATTGTTCATCCTATGGTTGGCAACCACTTTCAGC  285

seq1  TCTTTCAGTCCTTTCCCTAACTCAGACTAATGGTTGGCTGTGAACATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGTCCTTTCCCTAACTCAGACTAATGGTTGGCTGTGAACATCTG  335

seq1  TCTCTATTTCTCAGGTTCTGGCAGAGCTGCACAGGAGACATCTATATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTCTCAGGTTCTGGCAGAGCTGCACAGGAGACATCTATATCAG  385

seq1  GCTCCTGTTAGCAAGCAATTCTTGGCATCCACAATAGTATCTGGGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTTAGCAAGCAATTCTTGGCATCCACAATAGTATCTGGGTGTGG  435

seq1  TAATTGTATATGGGATGGATCCCCAGGTGGGGCAGTCCCTGTATGGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATATGGGATGGATCCCCAGGTGGGGCAGTCCCTGTATGGCCTT  485

seq1  TCCTTCAGTCTGTGCTCTACATTTAGTCTCCATATTTCCTCCCTTGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGTCTGTGCTCTACATTTAGTCTCCATATTTCCTCCCTTGAGTA  535

seq1  TTTTGTTCCCCCTTCTAAGAAGGACTGAAGCACTCACACATTGCTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCCCCTTCTAAGAAGGACTGAAGCACTCACACATTGCTTTTCT  585

seq1  TACTTTTTGAGCTTCATGTGGTCTGTGGCTCCAGCAGTGTATATAGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTGAGCTTCATGTGGTCTGTGGCTCCAGCAGTGTATATAGCAGA  635

seq1  GGAGGTCTTGTCTGACATCGATGGCAGGAGAGGCTTTTGGTACTGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTTGTCTGACATCGATGGCAGGAGAGGCTTTTGGTACTGGGAAG  685

seq1  GCTCAATGCGCCAGTGTAGGGGAATGCCAGGGCAGGGAGGCAGAAGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATGCGCCAGTGTAGGGGAATGCCAGGGCAGGGAGGCAGAAGTGGG  735

seq1  TGGACAGGTAGGAAAGTATCTTCATAGGAACCAGATGTGATAGGGGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGTAGGAAAGTATCTTCATAGGAACCAGATGTGATAGGGGAGTT  785

seq1  CTAAAGGGGAAACTAGGAAAAGAAAATAACATTTGAACTGTAAATAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGGAAACTAGGAAAAGAAAATAACATTTGAACTGTAAATAAATA  835

seq1  AAATATCCAATGAAAACAATAGAAAAATTAAAAAAGAAGTGGAGAGTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCAATGAAAACAATAGAAAAATTAAAAAAGAAGTGGAGAGTAAC  885

seq1  ACAAAATAAAAAGCCAAAAAGGAAAAATAGAAAAACAGGAAATTGTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAAAGCCAAAAAGGAAAAATAGAAAAACAGGAAATTGTTTAA  935

seq1  ATTTAAGATATCCAATTGGCATAGATTCACTGCTAATCCAATGCCCCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATATCCAATTGGCATAGATTCACTGCTAATCCAATGCCCCTAT  985

seq1  TTAACCTGTAAAGTTAGTGAAGAGAAAATCACATATAGAAGGATGCTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGTAAAGTTAGTGAAGAGAAAATCACATATAGAAGGATGCTCAT  1035

seq1  TTTGATTTGCATTTCTCTGATGACTAAGGAGTTTGAACATTTCTTTAGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGCATTTCTCTGATGACTAAGGAGTTTGAACATTTCTTTAGGT  1085

seq1  GCTTCTCAGCCATTTGAGATTCTTCTGTTGTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGCCATTTGAGATTCTTCTGTTGTGAATTC  1122

seq1: chr1_27622476_27623125
seq2: B6Ng01-156O13.g_68_721

seq1  GAATTCAAGTATCCAGCCTGAACTCATCTCTTTTAGATGCTAACTATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATCCAGCCTGAACTCATCTCTTTTAGATGCTAACTATTGG  50

seq1  TAATAGAAAAGCTGTTCATGACAGTGAATTGATTTTTTAAAAATAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAAAGCTGTTCATGACAGTGAATTGATTTTTTAAAAATAACTGT  100

seq1  GCATGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATAGACATAAAGATATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATAGACATAAAGATATATAG  200

seq1  AGATGGAAGAAGAAAGGATGGAAGACGATGTCAAATAAACTGTTATCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAGAAGAAAGGATGGAAGACGATGTCAAATAAACTGTTATCAGT  250

seq1  GTATCACACATATACATGTAATACACACACACACACACACATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACACATATACATGTAATACACACACACACACACACATATATATAT  300

seq1  GTGTGTGTGTGTGTGATATTTTCCAAATCTGTATGTAAAGCCAGTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGATATTTTCCAAATCTGTATGTAAAGCCAGTTCAGT  350

seq1  ATTTGAATAAAATATACATCTTCAC-TTACTGTAAAATCAAGTTGCCTAA  399
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  ATTTGAATAAAATATACATCTTCACAAAACTGTAAAATCAAGTTGCCTAA  400

seq1  ACATATTATTGGCAAATATGAGTAGGAAACACAGAAGACCTTTGTTATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATTGGCAAATATGAGTAGGAAACACAGAAGACCTTTGTTATTG  450

seq1  CCAGACATTTGACTAAGGAAATCAGTGAATGTATATCAATAGATAATCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATTTGACTAAGGAAATCAGTGAATGTATATCAATAGATAATCAT  500

seq1  AAGCTTACAAAAACCATTAGGAGATGTCTGGGACTTTTTGTTTCCTTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACAAAAACCATTAGGAGATGTCTGGGACTTTTTGTTTCCTTGCT  550

seq1  TTCTTTTTTCCATTTTTTTTTACCTTGATTGCACAG-TTTTGAGAGCTTG  598
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTTTTTTCCATTTTTTTTTACCTTGATTGCACAGTTTTTGAGAGCTTG  600

seq1  ATTACATGAAATT-GGTAGATGATTATGTCATGTCAAAATG-TTTTGGGT  646
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  ATTACATGAAATTGGGTAGATGATTATGTCATGTCAAAATGTTTTTGGGT  650

seq1  TTTA  650
      | ||
seq2  TATA  654