BAC Information

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BAC

Clone NameB6Ng01-157B15
Chromosome11 (Build37)1 (Build37)
Map Location 6,210,475 - 6,211,62416,496,584 - 16,496,816
singlet/doubletsingletsinglet
Overlap geneOgdh
Upstream geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, LOC100042227
Downstream geneZmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157B15.bB6Ng01-157B15.g
ACCDH951428DH951429
length1,122627
definitionDH951428|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B15, 5' end.DH951429|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,210,475 - 6,211,624)(16,496,584 - 16,496,816)
sequence
gaattccagtactctagaggaatggagcaagaggataagaagttcaagtc
atgttcagctgtgtcgcaagtttaagaccaacctgggacatatgagacct
tgtcaaaaaataaaggaagaaatcatgcttgggatttagtgtaatagtag
agagtccacttagtatgtgagaggccctgggcttgacgcctcagccctgc
ggggtgctaggaaggtaaaaaggtggtttgggttatactgctcttcatgg
gctacttgccatgaagtgaggcttggactaagtaagccagcttctgtggc
ttgtttggagtgatagagccttcctgaggttctgtgtggaaagagctgct
tcttgttagttagttcatgcagtgctgagatggggtagggtccggttatc
tcctgcccagtttgcgttggagaggctttactgtaggccttggttaggcc
aggcagagctgtctaatgatttcttagaatgtgtattttgaagatgggcc
actaaaccatgtggtccatggtcatctcttcttctagaacgagaatagac
actcccctgtgctgtccttgatcacctctgcttctagcacaaggatggac
acttgaggttccctggtcatctctgcttctagaacaagcacctatagcca
aggtatgcagtctttattaatgtctgcttccagaagaaggatggacagcc
aaaggatgctgtcattggtcattttgcttccacgacgtagggtctctgtt
ggacctgctggaaggttccatgaggtcagaagcacatggggtccatccag
tcctgtgtatgccatctcttagtaccttgtgtagagcctgatgggtggct
ggtatgctatcagtcctctagtccactcctcaccaccacctcaacagaaa
tactgtttttctcacagagaaagagccagagtgaattttggtagagccaa
atgatagaggacgtgagctttgttttgagaaattgacatctgaattgaaa
cactgataaatcttgaaagaagttgtactctttcgatgttcagacatcag
taatgtctgaatgttctatagtagtcatggtagatccgaagaaacatcga
tctctcttcttcagtcagttcc
gaattcctgtatcatctttgttgtgtatttctaaatgttctctattcttc
tgagcccctaccaaaattgttggttgagttctgcttataacatcctaggg
cttctataacctacatctccaaactctttccctttcctcctgtcaatcag
ttctgcaagcctaagagccacagatcaaaaattggtcatggcaacacccc
actccctgtaccagatttctttttctttttttttctttcttttttttttt
tttttttttttttgtttttcaaaaaagggtttctctgtgtagccctggct
atcctggtactcactttgtagaccaggctggccttaaactcagaaatccg
cctgcctctgccttccaagtgctgggattaaaggcgtgcgcaaccacccc
cggctaccaaatttctttattacttacttttctcatcaccatgaccaagt
acttgacagaaaggttaagaaaaaggaatggctttggcccatagtttcag
atcatcccatctgtgctcacttggtcccatattcttgggcaaagcattat
ggtagcaagaatgtgtttacttcgtggttgaccagaaagccaccaataga
taatatgctctataaagacatacccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6210475_6211624
seq2: B6Ng01-157B15.b_46_1167

seq1  GAATTCCAGTACTCTAGAGGAATGGAGCAAGAGGATAAGAAGTTCAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACTCTAGAGGAATGGAGCAAGAGGATAAGAAGTTCAAGTC  50

seq1  ATGTTCAGCTGTGTCGCAAGTTTAAGACCAACCTGGGACATATGAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGCTGTGTCGCAAGTTTAAGACCAACCTGGGACATATGAGACCT  100

seq1  TGTCAAAAAATAAAGGAAGAAATCATGCTTGGGATTTAGTGTAATAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAAATAAAGGAAGAAATCATGCTTGGGATTTAGTGTAATAGTAG  150

seq1  AGAGTCCACTTAGTATGTGAGAGGCCCTGGGCTTGACGCCTCAGCCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCACTTAGTATGTGAGAGGCCCTGGGCTTGACGCCTCAGCCCTGC  200

seq1  GGGGTGCTAGGAAGGTAAAAAGGTGGTTTGGGTTATACTGCTCTTCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTAGGAAGGTAAAAAGGTGGTTTGGGTTATACTGCTCTTCATGG  250

seq1  GCTACTTGCCATGAAGTGAGGCTTGGACTAAGTAAGCCAGCTTCTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGCCATGAAGTGAGGCTTGGACTAAGTAAGCCAGCTTCTGTGGC  300

seq1  TTGTTTGGAGTGATAGAGCCTTCCTGAGGTTCTGTGTGGAAAGAGCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGAGTGATAGAGCCTTCCTGAGGTTCTGTGTGGAAAGAGCTGCT  350

seq1  TCTTGTTAGTTAGTTCATGCAGTGCTGAGATGGGGTAGGGTCCGGTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAGTTAGTTCATGCAGTGCTGAGATGGGGTAGGGTCCGGTTATC  400

seq1  TCCTGCCCAGTTTGCGTTGGAGAGGCTTTACTGTAGGCCTTGGTTAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCAGTTTGCGTTGGAGAGGCTTTACTGTAGGCCTTGGTTAGGCC  450

seq1  AGGCAGAGCTGTCTAATGATTTCTTAGAATGTGTATTTTGAAGATGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCTGTCTAATGATTTCTTAGAATGTGTATTTTGAAGATGGGCC  500

seq1  ACTAAACCATGTGGTCCATGGTCATCTCTTCTTCTAGAACGAGAATAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCATGTGGTCCATGGTCATCTCTTCTTCTAGAACGAGAATAGAC  550

seq1  ACTCCCCTGTGCTGTCCTTGATCACCTCTGCTTCTAGCACAAGGATGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCTGTGCTGTCCTTGATCACCTCTGCTTCTAGCACAAGGATGGAC  600

seq1  ACTTGAGGTTCCCTGGTCATCTCTGCTTCTAGAACAAGCACCTATAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGTTCCCTGGTCATCTCTGCTTCTAGAACAAGCACCTATAGCCA  650

seq1  AGGTATGCAGTCTTTATTAATGTCTGCTTCCAGAAGAAGGATGGACAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGCAGTCTTTATTAATGTCTGCTTCCAGAAGAAGGATGGACAGCC  700

seq1  AAAGGATGCTGTCATTGGTCATTTTGCTTCCACGACGTAGGGTCTCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGCTGTCATTGGTCATTTTGCTTCCACGACGTAGGGTCTCTGTT  750

seq1  GGACCTGCTGGAAGGTTCCATGAGGTCAGAAGCACATGGGGTCCATCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGCTGGAAGGTTCCATGAGGTCAGAAGCACATGGGGTCCATCCAG  800

seq1  TCCTGTGTATGCCATCTCTTAGTACCTTGTGTAGAGCCTGATGGGGTGGC  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTGTGTATGCCATCTCTTAGTACCTTGTGTAGAGCCTGAT-GGGTGGC  849

seq1  TGGTATGCTATCAGTCCTCTAGTCCACTCCCCACCACCACCTCAACAGAA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGTATGCTATCAGTCCTCTAGTCCACTCCTCACCACCACCTCAACAGAA  899

seq1  ATACTGTTTTTTCTCACAGAGAAAGAGCCAGAGTGAATTTTGGTAGAAGC  950
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  ATACTG-TTTTTCTCACAGAGAAAGAGCCAGAGTGAATTTTGGTAG-AGC  947

seq1  CAAATTGATAGAGGAAGGTTGAGCTTTTGTTTTTGAGAAATTGACATCTT  1000
      |||| |||||||||| |  ||||||||   |||||||||||||||||| |
seq2  CAAA-TGATAGAGGACG--TGAGCTTT--GTTTTGAGAAATTGACATC-T  991

seq1  GAAATTGGAAACACTTGATAAAATCTTTTGAAAAGAAAGTTGTAACTCTT  1050
      |||  | ||||||| |||||||   | ||||||   ||||||| ||||||
seq2  GAA--TTGAAACAC-TGATAAA---TCTTGAAA--GAAGTTGT-ACTCTT  1032

seq1  TCGATGTTCCAGACAATCAGTAATGTCTGAATGTTTCTATAGTAGGTTTC  1100
      |||||||| ||||| |||||||||||||||||| |||||||||||   ||
seq2  TCGATGTT-CAGAC-ATCAGTAATGTCTGAATG-TTCTATAGTAG---TC  1076

seq1  ATGGTAGGTATCCGAAGATAACATCAGATCTCTCTTCTCCAGTCAGTTCC  1150
      |||||||  ||||||||| |||||| |||||||||||| |||||||||||
seq2  ATGGTAG--ATCCGAAGA-AACATC-GATCTCTCTTCTTCAGTCAGTTCC  1122

seq1: chr1_16496584_16496816
seq2: B6Ng01-157B15.g_192_471 (reverse)

seq1  GCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGG  50
      ||||||  |||| |||||||||||||||||||||||| || |||||||||
seq2  GCCGGGGGTGGTTGCGCACGCCTTTAATCCCAGCACTTGGAAGGCAGAGG  50

seq1  CAGGCAGATTTCTGAGTTCAAGGGCAGCCTGGTCTACAAAGTGAGTTCCA  100
      ||||| |||||||||||| |||| |||||||||||||||||||||| |||
seq2  CAGGCGGATTTCTGAGTTTAAGGCCAGCCTGGTCTACAAAGTGAGTACCA  100

seq1  GGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAGAACA  150
      ||| ||||||||||| ||||||||||||| | | ||||||||||| || |
seq2  GGATAGCCAGGGCTACACAGAGAAACCCTTTTTTGAAAAACAAAAAAAAA  150

seq1  AAAAAAACAAAAA---AAAAAAAAAAAAAGAAAGAAGAA-----------  186
      ||||||| |||||   ||| ||||||||||||| |||||           
seq2  AAAAAAAAAAAAAAAGAAAGAAAAAAAAAGAAA-AAGAAATCTGGTACAG  199

seq1  ----------------AAGAAGAA-------------------AGGAAGG  201
                      | ||  ||                   |||   |
seq2  GGAGTGGGGTGTTGCCATGACCAATTTTTGATCTGTGGCTCTTAGGCTTG  249

seq1  AAGGAAGGAAGGA-AGGAGGAAAGGAAGAAAGA  233
       || |  ||  || |||||||||||  ||||||
seq2  CAGAACTGATTGACAGGAGGAAAGG--GAAAGA  280