BAC Information

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BAC

Clone NameB6Ng01-157C07
Chromosome1 (Build37)
Map Location 144,176,005 - 144,177,118
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157C07.bB6Ng01-157C07.g
ACCDH951460DH951461
length1,0961,091
definitionDH951460|Mus musculus domesticus DNA, BAC clone: B6Ng01-157C07, 5' end.DH951461|Mus musculus domesticus DNA, BAC clone: B6Ng01-157C07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcattgtggcccttcagtttgggtatgttgtggcttcatttt
tattaaactctaaaaagtctttaatctcttcttttatttcatccttgacc
aagttatcattgagtagaatgttgttaagcttccatgtcaatattggctt
tctattatttatgttgttattgaagatcagccctagtccataatgatctg
ataggatgcatgggataatttcaataattttatatctgttgaggcctgtt
ttgtgaccaattatatgttcaattttggagaaggtaccaggaggtgatga
gaagaaggtctatccttttgttttatataaaatgttaaatcctttgtttc
ataacttctgttagtttcactgtgtctctgcttagtttccgtttccagga
tctgtccattgatgagagtcaggtctcccactattattgggttaggtaca
atgtgtgctttgagcattactatagtttccttaatgaatgtggatgttct
tgcatttggagcatagataatcagaattgaaagttcatcttgtgttccaa
gattttacctttgatgagtataaagtccccctcctttgtcttttttgata
gctttgggttagaggtcaattatttttttcgatattagaatggctactcc
tgcttgtttctttggactctttgcttggataattgtcttttggtttctta
ctctgaggtagtgtctgtctttgtccctgaggtgtgtttcctatatgcaa
caaaatgttgggtactgtttatgtagtcagtctgttagtttatgtctttt
tattggtgaattgcatccattgatattatgagatattaagaaaaagtaat
tgttgcttctgtatttttgtagttagagttgggattctgttcttgtggct
atcttcttttaggactattgaaggactatttcttgctttttctagggcat
aatttccatcgtgtgttggagttttcctttattaatctttgaaagctgga
ttcatggaagagaaaattgtgaattggtttgtcatgatacttgggttccc
atctatggaattgggagtttgttgagaagaaacgggctgcgactat
gaattcacattggtcagacattgtgtaaggattatttaaacatgagaacg
agatttgaagggaaatataattgtgtagatacttttcatgggaaaatgta
tagaggagagatggcttgaatatcaggctatattttacccaccttcaaca
gacaggaaatcccagtgttgccagcagagagatcagataacattacaaat
ctgttttgttggggctaatactagagcccacagataaaaagtatatgact
tttataagacagggtccatcagataaaagaaaaaatgcagaatttaatgg
agctcctgaataaatccctgacattttgtaggctttcctttaaagtttgt
aacaggtattatatgctggagaagaatgagaggaagctcagtggtggggt
tcgcatgacaaaccttacatttgataaaagccagatcattttcttcttat
aatgaatgtgccttcttatctctaaaatgtctcctgctgtctacagaaaa
taaaagaagctaaatcttccattgcttacattatattgcagtctatattt
tacagttgataaagtattttacctcagatctactgaactataatttccat
tcattttttccccaggaaaagaactaaaatggtggctagagtaccagtac
ctgagatccatcccaaccaaattaatactgtgattgcaagtaatagatga
ttatgacactaggttacagaaagtgaaattattctccgtgttttagtgtc
aatagcatgaacagcagctttctataaaacatgaagccagagaatcctta
tattaagtaacaacctcatctaagcccaatctataattatttgattgaat
gagacaagttaaaaacatgagctctcctgtagatgttagagaaagtttta
aatataaatatttaattatagtcagacacaaatgtcagtttatattatac
tgatataaacataaaatataaataccatatagtatttagatgccatgtca
gtctagtatatactgtctagtaatttctgcctgtgagtcttattttaata
ttttcataactacctgagctcttatttttaaatgagctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144176005_144177118
seq2: B6Ng01-157C07.g_67_1157

seq1  GAATTCACATTGGTCAGACATTGTGTAAGGATTATTTAAACATGAGAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGGTCAGACATTGTGTAAGGATTATTTAAACATGAGAACG  50

seq1  AGATTTGAAGGGAAATATAATTGTGTAGATACTTTTCATGGGAAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAAGGGAAATATAATTGTGTAGATACTTTTCATGGGAAAATGTA  100

seq1  TAGAGGAGAGATGGCTTGAATATCAGGCTATATTTTACCCACCTTCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGAGATGGCTTGAATATCAGGCTATATTTTACCCACCTTCAACA  150

seq1  GACAGGAAATCCCAGTGTTGCCAGCAGAGAGATCAGATAACATTACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAATCCCAGTGTTGCCAGCAGAGAGATCAGATAACATTACAAAT  200

seq1  CTGTTTTGTTGGGGCTAATACTAGAGCCCACAGATAAAAAGTATATGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTTGGGGCTAATACTAGAGCCCACAGATAAAAAGTATATGACT  250

seq1  TTTATAAGACAGGGTCCATCAGATAAAAGAAAAAATGCAGAATTTAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGACAGGGTCCATCAGATAAAAGAAAAAATGCAGAATTTAATGG  300

seq1  AGCTCCTGAATAAATCCCTGACATTTTGTAGGCTTTCCTTTAAAGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGAATAAATCCCTGACATTTTGTAGGCTTTCCTTTAAAGTTTGT  350

seq1  AACAGGTATTATATGCTGGAGAAGAATGAGAGGAAGCTCAGTGGTGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTATTATATGCTGGAGAAGAATGAGAGGAAGCTCAGTGGTGGGGT  400

seq1  TCGCATGACAAACCTTACATTTGATAAAAGCCAGATCATTTTCTTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATGACAAACCTTACATTTGATAAAAGCCAGATCATTTTCTTCTTAT  450

seq1  AATGAATGTGCCTTCTTATCTCTAAAATGTCTCCTGCTGTCTACAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTGCCTTCTTATCTCTAAAATGTCTCCTGCTGTCTACAGAAAA  500

seq1  TAAAAGAAGCTAAATCTTCCATTGCTTACATTATATTGCAGTCTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGCTAAATCTTCCATTGCTTACATTATATTGCAGTCTATATTT  550

seq1  TACAGTTGATAAAGTATTTTACCTCAGATCTACTGAACTATAATTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGATAAAGTATTTTACCTCAGATCTACTGAACTATAATTTCCAT  600

seq1  TCATTTTTTCCCCAGGAAAAGAACTAAAATGGTGGCTAGAGTACCAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTCCCCAGGAAAAGAACTAAAATGGTGGCTAGAGTACCAGTAC  650

seq1  CTGAGATCCATCCCAACCAAATTAATACTGTGATTGCAAGTAATAGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCATCCCAACCAAATTAATACTGTGATTGCAAGTAATAGATGA  700

seq1  TTATGACACTAGGTTACAGAAAGTGAAATTATTCTCCGTGTTTTAGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACACTAGGTTACAGAAAGTGAAATTATTCTCCGTGTTTTAGTGTC  750

seq1  AATAGCATGAACAGCAGCTTTCTATAAAACATGAAGCCAGAGAATCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATGAACAGCAGCTTTCTATAAAACATGAAGCCAGAGAATCCTTA  800

seq1  TATTAAGTAACAACCTCATCTAAGCCCAATCTATAATTATTTGATTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTAACAACCTCATCTAAGCCCAATCTATAATTATTTGATTGAAT  850

seq1  GAGACAAGTTAAAAACATGAGCTCTCCTGTAGATGTTCAGAGAAAGTTTT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGACAAGTTAAAAACATGAGCTCTCCTGTAGATGTT-AGAGAAAGTTTT  899

seq1  AAATATAAATATTTAATTATAGTCAGACACAAATGTCAGTTTTAATAATT  950
      ||||||||||||||||||||||||||||||||||||||||||  |||  |
seq2  AAATATAAATATTTAATTATAGTCAGACACAAATGTCAGTTT--ATA--T  945

seq1  AATACTGAATATAAAACATAAAAATATAAATTACCATTATAGTATTTAGA  1000
       |||||| |||| |||||| |||||||||| ||||| |||||||||||||
seq2  TATACTG-ATAT-AAACAT-AAAATATAAA-TACCA-TATAGTATTTAGA  990

seq1  TGCCAATGTCAGTCTTAGTTATAATACTGTCTAAGTAATTTTCTGCCTGT  1050
      |||| ||||||||| ||| ||| ||||||||| ||||| |||||||||||
seq2  TGCC-ATGTCAGTC-TAG-TAT-ATACTGTCT-AGTAA-TTTCTGCCTGT  1034

seq1  GAAGTCTTATTTTTAATATTTTCACATAACTACTGAAGCTCTTATTTATA  1100
      | ||||||| ||||||||||||  |||||||||   |||||||||||   
seq2  G-AGTCTTA-TTTTAATATTTT--CATAACTACCTGAGCTCTTATTT---  1077

seq1  TAAAATGAGCTCTG  1114
      | ||||||||||||
seq2  TTAAATGAGCTCTG  1091